BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474002
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48630.1 | Symbols: RACK1B_AT | receptor for activated C kin... 1775 0.0
AT3G18130.1 | Symbols: RACK1C_AT | receptor for activated C kin... 1203 0.0
AT1G18080.1 | Symbols: ATARCA, RACK1A_AT, RACK1A | Transducin/W... 767 0.0
> AT1G48630.1 | Symbols: RACK1B_AT | receptor for activated C kinase
1B | chr1:17981773-17983327 REVERSE LENGTH=1244
Length=1244
Score = 1775 bits (961), Expect = 0.0
Identities = 1123/1197 (94%), Gaps = 27/1197 (2%)
Strand=Plus/Plus
Query 1 AAACCCTAAACCATGGCTGAAGGACTCGTGTTGAAAGGCACAATGTGTGCCCACACTGAC 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 48 AAACCCTGAACCATGGCTGAAGGACTCGTGTTGAAAGGCACAATGTGTGCCCACACTGAT 107
Query 61 ATGGTCACCGCCATCGCCACACCGGTCGATAATTCCGACGTTATCGTGACCTCGTCGCGT 120
|||||||||||||| || |||||||||||||| |||||||| || || || |||||||||
Sbjct 108 ATGGTCACCGCCATTGCTACACCGGTCGATAACTCCGACGTGATTGTAACTTCGTCGCGT 167
Query 121 GACAAATCAATCATCCTCTGGAAACTCACAAAGGAAGACAAGTCTTACGGTGTTGCTCAG 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 168 GACAAATCAATCATCCTCTGGAAACTCACAAAGGAAGACAAGTCATACGGTGTTGCTCAG 227
Query 181 CGGAGGATGACTGGTCACTCTCACTTCGTTCAAGACGTTGTTCTCTCCTCCGATGGACAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 CGGAGGATGACTGGTCACTCTCACTTCGTTCAAGACGTTGTTCTCTCCTCCGATGGACAA 287
Query 241 TTCGCTCTCTCCGGATCCTGGGACGGTGAGCTTCGTCTCTGGGATCTCGCCACCGGTGAA 300
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 288 TTCGCTCTCTCCGGATCTTGGGACGGTGAGCTTCGTCTCTGGGATCTCGCTACCGGAGAA 347
Query 301 TCAACTCGTCGTTTCGTTGGTCACACGAAAGATGTTCTCTCTGTTGCTTTCTCTACTGAT 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 348 TCTACTCGTCGTTTCGTTGGTCACACGAAAGATGTTCTCTCTGTTGCTTTCTCTACCGAT 407
Query 361 AACCGTCAGATCGTCTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACACTTGGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 408 AACCGTCAGATCGTCTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACGCTTGGT 467
Query 421 GAGTGTAAGTATACAATCTCTGAAGCTGATGGTCACAAGGAATGGGTTAGTTGTGTTAGG 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GAGTGTAAGTATACCATCTCTGAAGCTGATGGTCACAAGGAATGGGTTAGTTGTGTTAGG 527
Query 481 TTTAGTCCTAATACTCTTGTGCCAACCATTGTATCTGCTTCTTGGGATAAAACTGTGAAA 540
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 528 TTTAGTCCTAATACTCTTGTGCCAACTATTGTATCTGCTTCTTGGGATAAAACTGTGAAG 587
Query 541 GTGTGGAATCTCCAGAATTGTAAGCTTAGGAACACTCTTGCTGGTCACTCTGGTTACTTG 600
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GTCTGGAATCTTCAGAATTGTAAGCTTAGGAACACTCTTGCTGGTCACTCTGGTTACTTG 647
Query 601 AACACTGTGGCTGTGTCACCTGATGGTTCGTTATGTGCCAGTGGTGGGAAAGATGGTGTG 660
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 648 AACACTGTGGCTGTGTCACCTGATGGTTCGTTGTGTGCCAGTGGTGGCAAAGATGGTGTG 707
Query 661 ATCTTGCTTTGGGATTTGGCTGAAGGGAAGAAGTTGTATTCTCTTGAGGCTGGCTCTATT 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 708 ATCTTGCTTTGGGATTTGGCTGAAGGGAAGAAGTTGTATTCTCTTGAAGCTGGCTCTATT 767
Query 721 ATTCATTCACTTTGCTTCAGTCCCAATAGGTACTGGCTCTGTGCAGCAACAGAGAATAGC 780
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 768 ATTCATTCACTTTGCTTCAGTCCCAATAGGTACTGGTTGTGTGCAGCAACAGAGAATAGC 827
Query 781 ATTAGGATTTGGGATCTTGAGAGTAAGTGTGTTGTTGAGGATTTGAAGGTTGATCTTAAG 840
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 828 ATTAGGATTTGGGATCTCGAGAGTAAGTCTGTTGTTGAGGATTTGAAGGTTGATCTTAAG 887
Query 841 ACTGAGGCTGAGAAGTCTGATGCTACTACTGGAACCGGAAACAAGACTAAGGTGATTTAC 900
|||||||||| ||| |||||| | ||||||||| |||||||||||| |||||||| |||
Sbjct 888 GCTGAGGCTGAAAAGACTGATGGTTCTACTGGAATCGGAAACAAGACCAAGGTGATCTAC 947
Query 901 TGCACAAGCTTGAACTGGAGTGCAGATGGAAGCACTTTGTTCAGTGGCTACACTGATGGA 960
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 948 TGCACAAGCTTGAACTGGAGTGCAGATGGAAACACTTTGTTCAGTGGATACACTGATGGA 1007
Query 961 GTTATCAGGGTTTGGGGTATTGGTCGTTATTAGAGAGACTAGAAGTTTCTTTAATCTCTC 1020
||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||
Sbjct 1008 GTTATCAGGGTTTGGGGTATTGGTCGTTACTAGAGAGACAAGAAGTTTCTTTATTCTCTC 1067
Query 1021 CAAA-------AT----T-T----TCTTCT-----GAATTAGTGTTTTGAGGATT-ATTT 1058
|||| || | | |||||| |||||||||||||||||||| ||||
Sbjct 1068 CAAATTTTTCCATCGACTCTAAAGTCTTCTCTTCTGAATTAGTGTTTTGAGGATTTATTT 1127
Query 1059 TTTGTTCTTT-CTATTTTCAGAATCCACAAACGTGATATTTTGATCCATTGATTTTGTTT 1117
|||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1128 TTTGTTCTTTTCTATTTTCAGAATCCACAAATGTGATATTTTGATACATTGATTTTGTTT 1187
Query 1118 CATAATTGTTTGCTTACAC--A--CTGAGTACACCGCGTAGCATCTGATTTGAAGTT 1170
|||| |||||| ||||||| | |||||||||| |||||| |||||||||||||||
Sbjct 1188 CATATTTGTTTTCTTACACTGAGTCTGAGTACACGGCGTAGAATCTGATTTGAAGTT 1244
> AT3G18130.1 | Symbols: RACK1C_AT | receptor for activated C kinase
1C | chr3:6210904-6212433 REVERSE LENGTH=1248
Length=1248
Score = 1203 bits (651), Expect = 0.0
Identities = 884/999 (88%), Gaps = 5/999 (1%)
Strand=Plus/Plus
Query 1 AAACCCT-AAACCATGGCTGAAGGACTCGTGTTGAAAGGCACAATGTGTGCCCACACTGA 59
||| ||| |||||||||| || |||||||| ||||| |||| ||| | |||||||| ||
Sbjct 50 AAAACCTCAAACCATGGCCGAGGGACTCGTATTGAAGGGCATTATGCGCGCCCACACCGA 109
Query 60 CATGGTCACCGCCATCGCCACACCGGTCGATAATTCCGACGTTATCGTGACCTCGTCGCG 119
||| ||||| |||||||| || ||| |||| ||||||||| | ||||| || |||||||
Sbjct 110 CATTGTCACGGCCATCGCTACGCCGATCGACAATTCCGACATCATCGTCACAGCGTCGCG 169
Query 120 TGACAAATCAATCATCCTCTGGAAACTCACAAAGGAAGACAAGTCTTACGGTGTTGCTCA 179
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 170 TGACAAATCCATCATCCTCTGGAAACTCACAAAGGACGATAAGTCTTACGGTGTTGCTCA 229
Query 180 GCGGAGGATGACTGGTCACTCTCACTTCGTTCAAGACGTTGTTCTCTCCTCCGATGGACA 239
||| ||| | || ||||||||||||||||| |||| ||||||||||| || || || ||
Sbjct 230 GCGTAGGCTCACAGGTCACTCTCACTTCGTGGAAGATGTTGTTCTCTCATCGGACGGTCA 289
Query 240 ATTCGCTCTCTCCGGATCCTGGGACGGTGAGCTTCGTCTCTGGGATCTCGCCACCGGTGA 299
|| || ||||||||| ||||||||||||||| |||||||||||||| ||||| || ||
Sbjct 290 GTTTGCACTCTCCGGAAGCTGGGACGGTGAGCTCCGTCTCTGGGATCTTGCCACGGGAGA 349
Query 300 ATCAACTCGTCGTTTCGTTGGTCACACGAAAGATGTTCTCTCTGTTGCTTTCTCTACTGA 359
| |||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 350 AACAACTCGTCGATTCGTTGGTCATACGAAAGATGTGCTCTCTGTTGCATTCTCTACTGA 409
Query 360 TAACCGTCAGATCGTCTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACACTTGG 419
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TAACCGGCAGATCGTGTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACACTTGG 469
Query 420 TGAGTGTAAGTATACAATCTCTGAAGCTGATGGTCACAAGGAATGGGTTAGTTGTGTTAG 479
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 470 TGAGTGTAAGTATACCATCTCTGAAGGTGATGGTCACAAGGAATGGGTTAGTTGTGTTAG 529
Query 480 GTTTAGTCCTAATACTCTTGTGCCAACCATTGTATCTGCTTCTTGGGATAAAACTGTGAA 539
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 530 GTTTAGTCCTAATACTCTTGTACCAACTATTGTATCTGCTTCTTGGGATAAAACTGTGAA 589
Query 540 AGTGTGGAATCTCCAGAATTGTAAGCTTAGGAACACTCTTGCTGGTCACTCTGGTTACTT 599
||| |||||||||||||| |||||||| |||||| |||||| |||||||||||||||| |
Sbjct 590 AGTTTGGAATCTCCAGAACTGTAAGCTGAGGAACTCTCTTGTTGGTCACTCTGGTTACCT 649
Query 600 GAACACTGTGGCTGTGTCACCTGATGGTTCGTTATGTGCCAGTGGTGGGAAAGATGGTGT 659
|||||||| ||||| || |||||||||||| |||| |||||||||||||||||||||||
Sbjct 650 CAACACTGTTGCTGTCTCGCCTGATGGTTCGCTATGCGCCAGTGGTGGGAAAGATGGTGT 709
Query 660 GATCTTGCTT-TGGGATTTGGCTGAAGGGAAGAAG-TTGTATTCTCTTGAGGCTGGCTCT 717
|||||| || ||||||||||||||||| |||||| || || || |||||||| || ||
Sbjct 710 TATCTTG-TTGTGGGATTTGGCTGAAGGAAAGAAGCTT-TACTCGCTTGAGGCGGGTTCG 767
Query 718 ATTATTCATTCACTTTGCTTCAGTCCCAATAGGTACTGGCTCTGTGCAGCAACAGAGAAT 777
|||||||| || |||||||||||||| || || |||||| | ||||| || || ||||||
Sbjct 768 ATTATTCACTCGCTTTGCTTCAGTCCTAACAGATACTGGTTGTGTGCTGCTACTGAGAAT 827
Query 778 AGCATTAGGATTTGGGATCTTGAGAGTAAGTGTGTTGTTGAGGATTTGAAGGTTGATCTT 837
|||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct 828 AGCATTAGGATTTGGGATCTTGAGAGCAAGTCTGTTGTTGAGGACTTGAAGGTTGATCTC 887
Query 838 AAGACTGAGGCTGAGAAGTCTGATGCTACTACTGGAACCGGAAACAAGACTAAGGTGATT 897
||| ||||||| |||||| ||| | | | |||||| || ||| ||| ||||| ||
Sbjct 888 AAGTCTGAGGCAGAGAAGAATGAAGGTGGTGTTGGAACTGGTAACCAGAAGAAGGTTATC 947
Query 898 TACTGCACAAGCTTGAACTGGAGTGCAGATGGAAGCACTTTGTTCAGTGGCTACACTGAT 957
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 948 TACTGCACAAGCTTGAACTGGAGTGCAGATGGAAGCACATTGTTCAGTGGTTACACTGAT 1007
Query 958 GGAGTTATCAGGGTTTGGGGTATTGGTCGTTATTAGAGA 996
|||||| ||||||| ||||||||||||||||| ||||||
Sbjct 1008 GGAGTTGTCAGGGTCTGGGGTATTGGTCGTTACTAGAGA 1046
> AT1G18080.1 | Symbols: ATARCA, RACK1A_AT, RACK1A | Transducin/WD40
repeat-like superfamily protein | chr1:6222201-6224151
FORWARD LENGTH=1358
Length=1358
Score = 767 bits (415), Expect = 0.0
Identities = 809/998 (81%), Gaps = 31/998 (3%)
Strand=Plus/Plus
Query 13 ATGGCTGAAGGACTCGTGTTGAAAGGCACAATGTGTGCCCACACTGACATGGTCACCGCC 72
||||| ||||||||||| ||||| ||||| ||| |||| |||||||||||||| || ||
Sbjct 125 ATGGCGGAAGGACTCGTTTTGAAGGGCACCATGCGTGCACACACTGACATGGTGACGGCA 184
Query 73 ATCGCCACACCGGTCGATAATTCCGACGTTATCGTGACCTCGTCGCGTGACAAATCAATC 132
|||||||| || ||||||| | ||| | ||||| | | || || |||||||| |||
Sbjct 185 ATCGCCACCCCAATCGATAACGCAGACATCATCGTCTCAGCTTCCCGCGACAAATCCATC 244
Query 133 ATCCTCTGGAAACTCACAAAGGAAGAC-AAGTCTTACGGTGTTGCTCAGCGGAGGATGAC 191
|| | ||||||||||| ||||| ||| ||| | |||||||| |||||| || | | ||
Sbjct 245 ATTTTGTGGAAACTCACCAAGGACGACAAAG-CCTACGGTGTAGCTCAGAGGCGTCTCAC 303
Query 192 TGGTCACTCTCACTTCGTTCAAGACGTTGTTCTCTCCTCCGATGGACAATTCGCTCTCTC 251
||||||||||||||||||| | || ||||||||||||||||||||||||||||| || ||
Sbjct 304 TGGTCACTCTCACTTCGTTGAGGATGTTGTTCTCTCCTCCGATGGACAATTCGCGCTTTC 363
Query 252 CGG-ATCCTGGGACGGTGAGCTTCGTCTCTGGGATCTCGCCACCGGTGAATCAACTCGTC 310
||| | ||||||||| ||||| ||||| |||||||| || | |||| || ||||||
Sbjct 364 CGGCA-GCTGGGACGGCGAGCTCCGTCTTTGGGATCTTGCTGCTGGTGTCTCCACTCGTA 422
Query 311 GTTTCGTTGGTCACACGAAAGATGTTCTCTCTGTTGCTTTCTCTACT-GATAACCGTCAG 369
| |||||||| ||||| || || || ||||| || || ||||| ||| || |||||||||
Sbjct 423 GATTCGTTGGACACACCAAGGACGTGCTCTCCGTCGCCTTCTC-ACTCGACAACCGTCAG 481
Query 370 ATCGTCTCTGCTTCTCGTGATCGTACGATTAAGCTTTGGAACACACTTGGTGAGTGTAAG 429
||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||||| |||
Sbjct 482 ATCGTCTCTGCATCTCGTGACCGTACGATCAAGCTGTGGAACACTCTTGGTGAGTGCAAG 541
Query 430 TATACAATCTCTGAAGCTGATG-GTCACA-AG-GAATGGGTTAGTTGTGTTAGGTTTAGT 486
|| || || || |||| || || | ||| | || |||||||| || || || || ||
Sbjct 542 TACACCATTTCAGAAGGTGGTGAGGGACACCGTGATTGGGTTAGCTGCGTCAGATTCAGC 601
Query 487 CCTAATACTCTTGTGCCAACCATTGTATCTGCTTCTTGGGATAAAACTGTGAAAGTGTGG 546
||||| || ||| ||| || |||||||||||||| ||||| || || ||||||||||||
Sbjct 602 CCTAACACGCTTCAGCCGACGATTGTATCTGCTTCGTGGGACAAGACCGTGAAAGTGTGG 661
Query 547 AATC-TCCAGAATTGTAAGCTTAGGAAC-ACTCTTGCTGGTCACTCTGGTTACTTGAACA 604
|| | | | ||| || ||||| | || | ||||||||||||||| | |||||| ||| ||
Sbjct 662 AACCTTTC-GAACTGCAAGCTCA-GATCGACTCTTGCTGGTCACACCGGTTACGTGAGCA 719
Query 605 CTGTGGCTGTGTCACCTGATGGTTCGT-TATGTGCCAGTGGTGGGAAAGATGGTG-TGAT 662
|||||||||| |||||||||||||| | | ||||| ||||| || ||||| |||| || |
Sbjct 720 CTGTGGCTGTATCACCTGATGGTTC-TCTTTGTGCAAGTGGAGGCAAAGACGGTGTTG-T 777
Query 663 CTTGCTTTGGGATTTGGCTGAAGGGAAGAAG-TTGTATTCTCTTGAGGCTGGCTCTATTA 721
||||| |||||||||||||| ||||||||| || || |||||||| ||| |||| | |
Sbjct 778 TTTGCTGTGGGATTTGGCTGAGGGGAAGAAGCTT-TACTCTCTTGAAGCTAACTCTGTGA 836
Query 722 TTCATTCACTTTGCTTCAGTCCCAATAGGTACTGGCTCTGTGCAGCAACAGAGA-ATAGC 780
| ||| | ||||||||||||||||| ||||||||||||||||| ||||| || | || |
Sbjct 837 TCCATGCTCTTTGCTTCAGTCCCAACAGGTACTGGCTCTGTGCTGCAACTGA-ACATGGT 895
Query 781 ATTAGGATTTGGGATCTTGAGAGTAAGTGTGTTGTTGAGGATTTGAAGGTTGATCTTAAG 840
|||| ||||||||| |||||||| ||| | ||||||||||||||||||||||||| |||
Sbjct 896 ATTAAGATTTGGGACCTTGAGAGCAAGAGCATTGTTGAGGATTTGAAGGTTGATCTCAAG 955
Query 841 ACTGAGGCTGAGAAGTCTGATGCTACTACTGGAACC-G--GAAAC-AAGACTAAGGTGAT 896
|||||||||| ||| |||| | || | ||| || | | || |||| ||||| ||
Sbjct 956 GCTGAGGCTGAAAAGGCTGA--CAAC-AGTGGT-CCTGCTGCCACCAAGAGGAAGGTTAT 1011
Query 897 TTACTGCACAAGC-TTGAACTGGAGTGCAGATGGAAGCACTTTGTTCAGTGGCTACACTG 955
||||||||||||| || |||||||| || ||||||||||| | |||||||| ||||| |
Sbjct 1012 TTACTGCACAAGCCTT-AACTGGAGCGCTGATGGAAGCACCCTCTTCAGTGGTTACACCG 1070
Query 956 ATGGAGTTATCAGGGTTTGGGGTATTGGTCGTTATTAG 993
||||||| || || |||||||||||||||||||| |||
Sbjct 1071 ATGGAGTCATTAGAGTTTGGGGTATTGGTCGTTACTAG 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5