BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474007
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48660.1 | Symbols: | Auxin-responsive GH3 family protein |... 2422 0.0
AT1G48670.1 | Symbols: | auxin-responsive GH3 family protein |... 1083 0.0
> AT1G48660.1 | Symbols: | Auxin-responsive GH3 family protein
| chr1:17995948-17997972 REVERSE LENGTH=1722
Length=1722
Score = 2422 bits (1311), Expect = 0.0
Identities = 1598/1736 (92%), Gaps = 21/1736 (1%)
Strand=Plus/Plus
Query 1 ATGAGTTTAAGCGTTGAGCTCAAGGATCTGGAGGTGTTAACAACGAATGCGAAGCAAATA 60
||||||||||||||||||||||||||| ||||||| ||||||||||| || |||||||||
Sbjct 1 ATGAGTTTAAGCGTTGAGCTCAAGGATTTGGAGGTCTTAACAACGAACGCAAAGCAAATA 60
Query 61 CAAGACGACGTATTGAAGGAAATACTAACACTCAACGCCAACACAGAGTATGTCCAACGC 120
||||| || ||||||||||| ||||| ||||| |||||||||||||||||| || ||||
Sbjct 61 CAAGATGATGTATTGAAGGAGATACTCACACTTAACGCCAACACAGAGTATCTCAAACGT 120
Query 121 TTTCTCCATGGAAGCTCTGATAAAGAGTTGTTCAAGAAGAATGTACCAGTGGTGAGCTAC 180
|||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 121 TTTCTCGATGGAAGCTCTGATAAAGAGTTGTTCAAGAAGAACGTACCGGTGGTGAGCTAC 180
Query 181 GGTGATGTCAAGCCTTATATCGAGCGTGTTGCGAATGGAGAGCCCTCGGATGTGATTTCG 240
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 AATGATGTCAAGCCTTATATCGAACGTGTTGCGAATGGAGAGCCCTCGGATGTGATTTCA 240
Query 241 GGT-GAACCCATTACGAGATTCGTCCAAAGCTCGGGAACCTCAGGAGGGATACATAAAAT 299
||| ||| ||||||| ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 241 GGTGGAA-CCATTACAAGATTCGTCCAAAGCACGGGAACTTCAGGAGGGATACATAAAAT 299
Query 300 ATTTCCAGTGAACGATAAGTACATAGAGAAGCTGGGATACCTTGTGGATGTATCCTCTTT 359
|||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||| |
Sbjct 300 ATTTCCAGTGAACGATAAGTACATAGAGAATCTTGGATACCTTTTGGCTGTATCCTCTCT 359
Query 360 CATTACTTCCAAGCATTTCAATGACAACGTAGCTGAGAAAGGAAAGAAAATGGCGTTTCT 419
|||||||| | ||||||||| |||| |||||||||||||||||||||||||||
Sbjct 360 CATTACTT-----C----CAATGACAAGGTAGATGAGAAAGGAAAGAAAATGGCGTTTCT 410
Query 420 TTACAACAGATTAGAATCCAAAACTCCCTCCGGATTA-CCCGTTTCTTCATCATTTTCAA 478
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||
Sbjct 411 TTACAACAGATTAGAATCCAAAACTCCCTCCGGATTAGCCC-TTTCTTCATCATTTACAA 469
Query 479 GCTATTTCATGAGCGATTACTTCAAAAACCGACCATCAAAATGTAATTCTGAGTACACAA 538
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 470 GCTATTTCATGAGCGATTACTTCAAAAACCGGTCATCAAAATGTAATTCTGAGTACACAA 529
Query 539 GCCCCGACCAAGTTATATTTTGCCCCGACAACAACCAAAGTATGTATTGTCATCTTCTAT 598
||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 530 GCCCCGACCAAGTCATATTGTGCCCCGACAACAACCAAAGTGTGTATTGTCATCTTCTAT 589
Query 599 GCGGGCTGTCCCAGAGAGAAAAGGTTGTGGGAGTTAGTGCAACATTTGCTCATGCCTTGG 658
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GTGGGCTTTCCCAGAGAGAAAAGGTTGTGGGAGTTAGTGCAACATTTGCTCATGCCTTAA 649
Query 659 TCAAAGCACTCAATGCTCTTCAAATTTACTGGAAGGAATTGTCTAGTAATATCCGATCAG 718
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 650 TCAAAGCAATAAATGCTCTTCAAATTTACTGGAAGGAATTGTCTAGTAATATCCGGTCAG 709
Query 719 GTCATGTTAGTGAGTGGATCACTGACAC-TAACTGTAGAAACT-CTGTCTCGGCCACTCT 776
|||||||||||||||||||||||||| | | |||| | ||| | ||||||| |||| |||
Sbjct 710 GTCATGTTAGTGAGTGGATCACTGAC-CTTGACTGCA-AAAATGCTGTCTCAGCCATTCT 767
Query 777 TGGAGGACCGGATCTTGAATTGGCCGATATGATTGAACGAGAATGCAGCAACAACTCGTG 836
||||||||| || | ||||||||| ||| ||||||||| |||||||||| |||| || ||
Sbjct 768 TGGAGGACCTGACCCTGAATTGGCTGATGTGATTGAACAAGAATGCAGCCACAAGTCATG 827
Query 837 GGAAGGTATCATCACACGACTTTGGCCCAAAGCAAAATTTATTGAATGCATTGTTACAGG 896
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 828 GGAAGGTATCATCACACGACTTTGGCCCAAAGCAAAGTTTATTGAATGCATTGTTACAGG 887
Query 897 ACAAATGGCTCAATACATTCCAACATTGGAGTTTTATTCCAACAAGCTTCCTATAGTTTC 956
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 888 ACAAATGGCCCAATACATTCCAACATTGGACTTCTATTCCAACAAGCTTCCTATAGTTTC 947
Query 957 CATGATATATGGGTCTTCTGAAAGTATATTTGGGGTGAATGTGGATCCTTTATCCAAACC 1016
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 CATGGTATATGGGTCTTCTGAAAGTATATTTGGGGTGAATGTGGATCCTTTATCCAAACC 1007
Query 1017 ACAAGATGTGTCCTACACATTTCTGCCTAATATCTCCTACTTTGAGTTTCTACCTGTTGA 1076
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1008 ACAAGATGTGTCCTACACATTTCTGCCCAATATCTCCTACTTTGAGTTTCTACCTATTGA 1067
Query 1077 TCACGAGGAAGATATGAACAACATTGTTGATCTTGTCAACGTCAAGCTCGGGTGCTATTA 1136
||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||
Sbjct 1068 TCATGAGGAAGATATGAACACCATTGTTGATCTTGTCGGTGTCAAGCTAGGGTGCTATTA 1127
Query 1137 TGAAACCGTGGTTACCAGTTATTTTGGTCTACACAGATATCTTGTTGGAGATATTCTACA 1196
||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1128 TGAAACCGTGGTTACTAGTTATTTTGGTCTACACAGGTATCTTATTGGAGATATTCTACA 1187
Query 1197 GGTGACTGGATTTTACAATAAGACACCTCAATTTAGATTTGTACGCAGAAAGAATACTGT 1256
|||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 1188 GGTGACTGGATTCTACAATAACACACCTCAATTTAGATTCGTACGCAGAAAGAATATTGT 1247
Query 1257 TTTAAGCGTCAATAGTGAAGCAACAACTGAAGAGGACATTTTAAGAGGG-TTGGCTCGTG 1315
|||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |||
Sbjct 1248 GTTAAGCGTCAATAGTGAAGCAACAACTGAACAGGACATTTTAA-AGGGGTTGGCTAGTG 1306
Query 1316 CGACCCTTGTTCTTGAATCTTCAGATTTAATGTTGATGGGCTTCACATGCTGTGCATATA 1375
|||||||||||||||| |||||| ||| |||||||| ||| |||||||| | ||| |||
Sbjct 1307 CGACCCTTGTTCTTGAGTCTTCAAATTCAATGTTGACGGGTTTCACATGTTATGCGGATA 1366
Query 1376 TCTCCACTTTTCCAGGTCACTACGTTTTTTACTGGGAACTCAAAGCAAAAGATGTTAACG 1435
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1367 TCTCCAGTTTTCCAGGTCACTACGTCTTTTACTGGGAACTCAAAGCAAAAGATGTTGACG 1426
Query 1436 ATGTTGTTGAACTTGATGAAAAAGTGTTGGCAGAATGTTGCAATGCGTTAGAGGAATCGT 1495
|||||||||| ||||||||||| || |||| |||||||||| ||||||||||||||||||
Sbjct 1427 ATGTTGTTGAGCTTGATGAAAATGTATTGGAAGAATGTTGCTATGCGTTAGAGGAATCGT 1486
Query 1496 TTGGTTCTCTTTATAAGAGACTAAGGAGTAAGGATGGGTCAGTTGGAGCTCTAGAGATAA 1555
||| | |||||||||| |||||||||||||| || |||||| ||||||||||||||||||
Sbjct 1487 TTGATGCTCTTTATAAAAGACTAAGGAGTAAAGAAGGGTCAATTGGAGCTCTAGAGATAA 1546
Query 1556 GGGTGGTGCAACAAGGAACATTTGATTCTCTCATGGAATATTTCGTCTCCCAAGGTTGTT 1615
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1547 AAGTGGTGCAACAAGGAACATTTGATTCTCTCATGGAATATTTCATCTCCAAAGGTGGTT 1606
Query 1616 CGAGT-GCTCAGTACAAAACACCTATTTGCATCAACTCTTCTGAAGCCTTGGCAGTTCTT 1674
|| || ||||| ||||| |||||||| || ||||||||||| ||| |||| |||||||||
Sbjct 1607 CG-GTTGCTCAATACAAGACACCTATGTGTATCAACTCTTCGGAAACCTTAGCAGTTCTT 1665
Query 1675 GAAGATAAGGTTCTTGCTCGATTCTACAGCGAAAAATCTCCTCCTCTTGACTTATA 1730
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1666 GAAGATAAGGTTATTGCTCGATTCTACAGCCAAAAATCTCCTCCTCTTAACTTATA 1721
> AT1G48670.1 | Symbols: | auxin-responsive GH3 family protein
| chr1:17998946-18001200 REVERSE LENGTH=1578
Length=1578
Score = 1083 bits (586), Expect = 0.0
Identities = 957/1132 (85%), Gaps = 42/1132 (4%)
Strand=Plus/Plus
Query 620 AGGTTGTGGGAGTTA-GTGCAACATTTGCTCATGCCTTGG-TCAAAG-CACTCAATGCTC 676
|||||||| ||| || ||||| | |||||| || ||||| || || || || || ||
Sbjct 467 AGGTTGTGAGAG-TAGGTGCAGCCTTTGCTTTTGTCTTGGTTC-GAGCCA-TCGATTTTC 523
Query 677 TTCA-AATTTACTGGAAGGAATTGTCTAGTAATATCCGATCAGGTCATGTTAGTGAGTGG 735
|| | || ||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 524 TTGAGAA-ACACTGGAAGGAATTGTGTAGCAATATCCGATCAGGTCATGTTAGTGAGTGG 582
Query 736 ATCACTGACAC-TAACTGTAGAAACTCTGTCTCGGCCACTCTTGGAGGACCGGATCTTGA 794
||||||||| | | | | |||||| ||||||| ||| |||| ||||||| ||| | |
Sbjct 583 ATCACTGAC-CTTGAGGGCAGAAACGCTGTCTCCACCATTCTTCGAGGACCTGAT-TCAA 640
Query 795 -ATTGGCCGATATGATTGAACGAGAATGCAGCAACAACTCGTGGGAAGGTATCATCACAC 853
|||||| ||| | ||||||| |||||||||| |||| || ||||||||||| || ||||
Sbjct 641 TATTGGCTGATGTTATTGAACAAGAATGCAGCCACAAGTCCTGGGAAGGTATTATTACAC 700
Query 854 GACTTTGGCCCAAAGCAAAATTTATTGAATGCATTGTTACAGGACAAATGGCTCAATACA 913
|||||||||||||||| |||| |||||| || ||| | |||||||||||| |||||||||
Sbjct 701 GACTTTGGCCCAAAGCCAAATATATTGATTGTATTATAACAGGACAAATGTCTCAATACA 760
Query 914 TTCCAACATTGGAGTTTTATTCCAACAAGCTTCCTATAGTTTCCATGATATATGGGTCTT 973
|||||| ||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 761 TTCCAATGTTGGAGTTTTATTCCAACAAGCTGCCTATAGTTTCCACAACATATGGGTCTT 820
Query 974 CTGAAAGTATATTTGGGGTGAATGTGGATCCTTTATCCAAACCACAAGATGTGTCCTACA 1033
||||||||| ||||||| |||||||||||||| ||| ||||||||||||| |||||||
Sbjct 821 CTGAAAGTACATTTGGGATGAATGTGGATCCTCTATGCAAACCACAAGATACCTCCTACA 880
Query 1034 CAT-TTCTGCCTAATATCTCCTACTTTGAGTTTCTACCTGTTGATCACGAGGAAGATATG 1092
||| | | ||| || ||||||||||| ||||||||||||||||||||| ||| ||| |||
Sbjct 881 CATGTGC-GCCGAACATCTCCTACTTCGAGTTTCTACCTGTTGATCACAAGGGAGACATG 939
Query 1093 AACAA-CATTGTTGATCTTGTCAACGTCAAGCTCGGGTGCTATTATGAAACC-GTGGTTA 1150
||| |||||||||||||||| |||||||| | |||||||| |||| |||| ||||| |
Sbjct 940 -GCAAGCATTGTTGATCTTGTCGACGTCAAGTTAGGGTGCTACTATG-AACCGGTGGTCA 997
Query 1151 CCAGTTATTTTGGTCTACACAGATATCTTGTTGGAGATATTCTACAGGTGACTGGATTTT 1210
| | ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 998 CTAATTATTTTGGTCTACACAGATATCTTATTGGAGATATTCTACAGGTTACTGGATTTT 1057
Query 1211 ACAATAAGACACCTCAATTTAGATTTGTACGCAGAAAGAATACT-GTTTTAAGCGTCA-A 1268
||||||| |||||||||||||||||||||| ||||||||| | ||||||||||| | |
Sbjct 1058 ACAATAACACACCTCAATTTAGATTTGTACATAGAAAGAAT-GTGGTTTTAAGCGTGAGA 1116
Query 1269 TAGTGAAG-CAACAACTGAAGAGGACATTTTAAGAGG-GTTGGCTC--GTGCGACCCTTG 1324
| | | || ||||||||||||| |||||||||| ||| |||| || ||| || || |
Sbjct 1117 TCG-G-AGACAACAACTGAAGAAGACATTTTAA-AGGCGTTGAATCATGTGGGA--CTGG 1171
Query 1325 TTCTTGAATCTTCAGATTTAATGTTGATGGGCTTCACATGCTGTGCATATATCTCCACTT 1384
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
Sbjct 1172 TTCTTGAATCTTCAGATTTAATGTTGATGGGCTTCACATGCTATGCAGATATCTCCACAT 1231
Query 1385 TTCCAGGTCACTACGTTTTTTACTGGGAACTCAAAGCAAAAGATGTT-AACGATGTTGTT 1443
||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||| ||
Sbjct 1232 TTCCAGGTCACTACGTTTTTTACTGGGAACTCAAAGCTAAAGACGTTCAA-GATGTT-TT 1289
Query 1444 -GAACTTGATGAAAAAGTGTTGGCAGAA-TGTTGCAATGCGTTAGAGGAATCGTTTGGTT 1501
|| ||||| || ||||| ||| ||| |||||| | |||||||| || |||| |
Sbjct 1290 CGAGCTTGAGGAGAAAGTAATGGT-GAAATGTTGCTCTTTATTAGAGGAGTCATTTGATG 1348
Query 1502 CTCTTTATA-AGAGACTAAGGAGTAAGGATGGGTCAGT-T-GGAGCTCTAGAGATAAGGG 1558
| |||| | | | || ||||||| |||| || || | ||| ||||||||||||| |
Sbjct 1349 AAGTATATAGAAAAAATA-GGAGTAAAGATGAGT--GTATCGGACCTCTAGAGATAAGAG 1405
Query 1559 TGGTGCAACAAGGAACATTTGATTCTCTCATGGAATATTTCGTCTCCCAAGGTTGTTCGA 1618
| ||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||||
Sbjct 1406 TTGTGCAACAAGGAACATTCGATTCCCTCATGGAATATTTCATCTCCCAAGGAGGTTCGA 1465
Query 1619 GTGCTCAGTACAAAACACCTATTTGCATCAACTCTTCTGAAGCCTTGGCAGTTCTTGAAG 1678
|||||| ||||| ||||| || || |||||||||||||||||||| ||||||||||||
Sbjct 1466 TTGCTCAATACAAGACACCCATATGTATCAACTCTTCTGAAGCCTTAGCAGTTCTTGAAA 1525
Query 1679 ATAAGGTTCTTGCTCGATTCTACAGCGAAAAATCTCCTCCTCTTGACTTATA 1730
| ||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1526 ACAAGGTTCTTGCTCGATTCTTTAGCGAAAAATCTCCTCCTCTTGACTCATA 1577
Score = 296 bits (160), Expect = 4e-79
Identities = 268/320 (84%), Gaps = 8/320 (3%)
Strand=Plus/Plus
Query 24 GGATCTGGAGGTGTTAACAACGAATGCGAAGCAAATACAAGACGACGTATT-GAAGGAAA 82
||||||||||| | ||||| ||||||| ||||| |||||||| |||||||| ||| || |
Sbjct 27 GGATCTGGAGGAGCTAACATCGAATGCAAAGCAGATACAAGAAGACGTATTGGAA-GAGA 85
Query 83 TACTAACACTCAACGCCAACACAGAGTATGTCCAACGCTTTCTCCATGGAAGCTCTGATA 142
|||| ||||| || |||||||| || ||| | || ||||| ||||| || ||||||||||
Sbjct 86 TACTCACACTTAATGCCAACACTGAATATCTTCACCGCTTCCTCCACGGGAGCTCTGATA 145
Query 143 AAGAG-TTGTTCAAGAAGAATGTACCAGTGGTGAGCTACGGTGATGTCAAGCCTTATATC 201
||| | || ||||| ||||| ||||| ||||| | ||| | |||||| ||||||||||||
Sbjct 146 AAGTGCTT-TTCAAAAAGAACGTACCGGTGGTTACCTATGATGATGTTAAGCCTTATATC 204
Query 202 GAGCGTGTTGCGAATGGAGAGCCCTCGGATGTGATTTCGGGTGAACCCATTACGA-GATT 260
|| ||||||||||||||||||||||||||||||||||| |||| ||| || || | | ||
Sbjct 205 GAACGTGTTGCGAATGGAGAGCCCTCGGATGTGATTTCTGGTGGACCTATCACTATG-TT 263
Query 261 CGTCCAAAGCTCGGGAACCTCAGGAGGGATACATAAAA-TATTTCCAGTGAACGATAAGT 319
| ||| ||| | ||||| |||||||||| ||| ||| |||||||||||||||||||||
Sbjct 264 CCTCCGTAGCACCGGAACTTCAGGAGGGAAACA-AAAGGTATTTCCAGTGAACGATAAGT 322
Query 320 ACATAGAGAAGCTGGGATAC 339
|||| || ||| ||||||||
Sbjct 323 ACATTGAAAAGTTGGGATAC 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85591929225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5