BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474008
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48700.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1336 0.0
AT1G48740.2 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 852 0.0
> AT1G48700.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:18011035-18012871
REVERSE LENGTH=1174
Length=1174
Score = 1336 bits (723), Expect = 0.0
Identities = 848/908 (93%), Gaps = 10/908 (1%)
Strand=Plus/Plus
Query 2 TTCATGTGTATATAATGTTCCAGGCGAAACGGCGCAAGACATATAGGCAAGAGATAATAT 61
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 35 TTCATGTGTATATAATGTTCCAGGCTAAACGGCGCAAGACCTATAGGCAAGAGATAATAT 94
Query 62 CCAATTATCAGCCACGTTTCAAGGGGTTGTATAAACTTGATCCTAAATTGTTTTTGCTTC 121
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 95 CCAATTATCAGCCACGTTTCAAGGGGTTGTATAAACTTGATCCCAAATTGTTTTTGCTTC 154
Query 122 CCTCATTCCGCAAGGCGATCAGCGAAAACACAGAGGAAAGCTTCAGACGTATCATTTCTG 181
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 CCTCGTTCCGCAAGGCGATCAGCGAAAACACAGAGGAAAGCTTCAGACGTATCATTTCTG 214
Query 182 AACCGTTTCCTGGTGTTTTCGTCTTTAAAATGTTTCAGCCTGAATTCTTTGAGAAATTGC 241
||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct 215 AACCGTTTCCTGGTGTTTTTGTCTTTAAAATGTTTCAGCCTGACTTCTCTGAGAAATTGC 274
Query 242 TAGTT-GAGGTAGAGAATTTCAGAAAGTGGGCTCATGAGAAAAATTTCACGATCAGGAGA 300
|| || ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||
Sbjct 275 TA-TTAGAGGTAGAGAATTTCAGAAAGTGGGCTAATGAGACAAACTTCACGATCAGGAGA 333
Query 301 CCAGACAACACGAGTAAATACGGTGTTGTACTTGACGACTTTGGCCTGGATATCATGCTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 334 CCAGACAACACGAGTAAATACGGTGTTGTACTTGACGACTTTGGCCTGGATATTATGCTT 393
Query 361 AAGCAACTCATGGAGGAGTTTATCTTTCCTATTTGCAAAGTATGCTTCCCTGAAGTGTGT 420
|||||||||||||| || ||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 394 AAGCAACTCATGGATGATTTTATCTTTCCTATTTGCAAAGTATTCTTTCCTGAAGTGTGT 453
Query 421 GGAACAATGTTTGACTCTCACTATGGATTTTTAACTGAAAATGGTGAAGATAGGGATGCT 480
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 454 GGAACAATGTTTGACTCTCACTATGGATTTTTTATTGAAAATGGTGAAGATAGGGATGCT 513
Query 481 GACGTAGGCTTTCATGTGGAAGATTCAGA-AGTGACATTGAACGTTTGTTTAAGTAAACA 539
||||||||||||||||||||||||||||| | | |||||||| |||||||| ||||||||
Sbjct 514 GACGTAGGCTTTCATGTGGAAGATTCAGACA-TAACATTGAATGTTTGTTTGAGTAAACA 572
Query 540 AGGAGAGGGAGGGGAAATATTTTTCGCAGGCACAAGATGCAAGAAACATATGGATACAGA 599
||| |||||||| |||||| ||||||||||| || ||||||| ||||||||||||| |||
Sbjct 573 AGGTGAGGGAGGAGAAATACTTTTCGCAGGCGCACGATGCAATAAACATATGGATATAGA 632
Query 600 TCCAAAGCCAGAGGAATGTTTTGATTACTGTCATATACCGGGTCAAGCTATACTTCACCG 659
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 633 TCCAAAGCCAGAGGAATATTTTGATTACTGCCATATACCGGGTCAAGCTATACTTCACCG 692
Query 660 TGGCTGCCACCG-CCATGGTGCCAGAGCCAC-GACATCTGGTCGTTGGGCCAATATGATT 717
|||||||||| | ||||||||| |||||||| | ||||||||||| ||||||||||||||
Sbjct 693 TGGCTGCCAC-GTCCATGGTGCTAGAGCCACAG-CATCTGGTCGTCGGGCCAATATGATT 750
Query 718 CTTTGGTGCCAAAACTCTTTGTTTAGAGAGATGCAAACTTATGAGCCGGCATTCTCAGAC 777
||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 751 CTTTGGTGCCAGAACTCTTTGTTTAGAGAGATGCAAACTTATGAACCGGAATTCTCAGAC 810
Query 778 TGGTGCGGTCAATGTGTCCATGAA-ATGAAAGAAAAGGAAAGCCAGAGTCTTGCTGCCAA 836
|||||||||||||||||||||||| | ||||||||| ||||||||| |||||||| |||
Sbjct 811 TGGTGCGGTCAATGTGTCCATGAAGA-GAAAGAAAACAAAAGCCAGATTCTTGCTGTCAA 869
Query 837 AAGAAAGGTTACAAAAAAGTTAGAGAGTGAAGCTGAAGCTCCACGAAAAAACTGAAGTTT 896
|||||||| | | | ||||||||||||| ||| ||||||||||||| ||||||||
Sbjct 870 AAGAAAGGAGATGTTTAGGATAGAGAGTGAAGCCGAACCTCCACGAAAAAAATGAAGTTT 929
Query 897 ATGCTTTG 904
||||||||
Sbjct 930 ATGCTTTG 937
> AT1G48740.2 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:18023387-18026065
REVERSE LENGTH=1544
Length=1544
Score = 852 bits (461), Expect = 0.0
Identities = 732/859 (85%), Gaps = 33/859 (4%)
Strand=Plus/Plus
Query 15 AATGTTCC-AGGCGAAACGGCGCAAG-ACATATAGGCAAG-AGATAATATCCAATTATCA 71
|||||||| | || ||| || ||||| || ||| ||| || |||||| ||| ||||||||
Sbjct 383 AATGTTCCAAAGCTAAATGGTGCAAGAAC-TATTGGC-AGAAGATAAAATCTAATTATCA 440
Query 72 GCCACGTTTCAAGGG-GTTGTATAAACTTGATCCTAAATTGTTTTTGCTTCCCTCATTCC 130
||||| |||| |||| ||||||||| ||||||| |||||||| |||||||||| ||||
Sbjct 441 GCCAC-TTTCTAGGGAGTTGTATAATTTTGATCCCGAATTGTTTCTGCTTCCCTCTTTCC 499
Query 131 GCAAGGCGATCAGCGAAAACACAGAGGAAAGCTTCAGACGTATCATTTCTGAACCGTTTC 190
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 500 GAAAGGCGATCAGCGAAAACACAAAGGAAAGCTTCAGACGTATCATTTCTGAACCGTTTC 559
Query 191 CTGGTGTT-TTCGTCTTTAAAATGTTTCAGCCTGAATTCTTTGAGAAATTGCTAGTTGAG 249
|||||||| || |||||| |||||||||||||||| ||| || |||||||| |||| |||
Sbjct 560 CTGGTGTTCTT-GTCTTTCAAATGTTTCAGCCTGACTTCATTCAGAAATTGATAGTAGAG 618
Query 250 GTAGAGAATTTCAGAAAGTGGGCTCATGAGAAAAATTTCACGATCAGGAGACCAG-ACAA 308
||||| ||| || ||||||||| |||||||| ||||||| | ||||||||||| | || |
Sbjct 619 GTAGAAAATATCGGAAAGTGGGTTCATGAGACAAATTTCCCAATCAGGAGACC-GTACCA 677
Query 309 CACGAGTAAATACGGTGTTGTACTTGACGACTTTGGCCTGGATATCATGCTTAAGCAACT 368
|| ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||
Sbjct 678 CATGAGTAAATACGGTGTTGCGTTTGTCGACTTTGGCCTGGATATCATGCTTCAGCAACT 737
Query 369 CATGGAGGAGTTTATCTTTCCTATTTGCAAAGTATGCTTCCCTGAAGTGTGTGGAACAAT 428
||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 738 CATGGAGGAATTTCTCTTTCCTATTTGCAAAGTATTCTTCCCTGAAGAGTGTGGAGCAAT 797
Query 429 GTTTGACTCTCACTATGGATTTT-TAACTGAAAATGGTGAAGATAGGGATGCTGACGT-A 486
||||||||||||| |||||| || || |||||||||||||||||||||| || | | |
Sbjct 798 GTTTGACTCTCACCATGGATATTATAT-TGAAAATGGTGAAGATAGGGATCCTC-CATTA 855
Query 487 GGCTTTCATGTGGAAGATTCAGAAGTGACATTGAACGTTTGTTTAAGTAAACAAGGAGAG 546
|||| |||| | || ||||| ||| | |||||||| |||||| | || |||||| |||
Sbjct 856 GGCTATCATTTAGATGATTCGGAAATAACATTGAATGTTTGTGTGAGGAAACAATTTGAG 915
Query 547 GGAGGGGAAATATTTTTCGCAGGCACAAGATGCAAGAAACATATG-GATACAGATCC-AA 604
||||||||||||| |||| ||||||| ||||| || ||||| | || ||||| | ||
Sbjct 916 GGAGGGGAAATATCTTTCATAGGCACACGATGCTTGAGACATAAGCGA-ACAGA-CGTAA 973
Query 605 AGCCAGAGGAATGTTTTG-ATTACTGTCATAT-ACCGGGTCAAGCTATACTTCACCGTGG 662
||||||||||| ||||| ||||||||||| | ||||||||||||||||||||| |||||
Sbjct 974 AGCCAGAGGAA-GTTTTTCATTACTGTCAT-TCACCGGGTCAAGCTATACTTCATCGTGG 1031
Query 663 CTGCCACCGCCATGGTGCCAGAGCCA-CG-AC-ATCTGGT-CGTTGGGCCAATATGATTC 718
| |||||||||||||| ||||||||| | || |||| || | | |||||||||||||||
Sbjct 1032 CCGCCACCGCCATGGTCCCAGAGCCAACACACCATCTTGTTC-TCGGGCCAATATGATTC 1090
Query 719 TTTGGTGCCA-AAACTCTTTGTTTAGAGAGATGCAAACTTATGAGCCGGCATT-CTCAGA 776
|||| ||| | |||||||||||||||||||||| ||| |||||| | ||| | ||||
Sbjct 1091 TTTGTTGC-AGAAACTCTTTGTTTAGAGAGATGGAAAAATATGAGAAAG-ATTTCCCAGA 1148
Query 777 CTGGTGCGGTCAATGTGTCCATGAAATGAAAGAAAAGGAAAGCCAGAGTCTTGCTGCCAA 836
|||||| | |||| | |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1149 GTGGTGCAATGAATGCGCCCATGAAAAGAAAGAAAAGGAAAGCCAGAGTCTTGATGCCAA 1208
Query 837 AAGAAAGGTTAC-AAAAAA 854
||||||||||| ||||||
Sbjct 1209 AAGAAAGGTTATTAAAAAA 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44155815213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5