BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474010
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48745.1 | Symbols: | unknown protein; Has 7 Blast hits to ... 955 0.0
> AT1G48745.1 | Symbols: | unknown protein; Has 7 Blast hits to
7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:18030704-18031439 FORWARD LENGTH=736
Length=736
Score = 955 bits (517), Expect = 0.0
Identities = 672/741 (91%), Gaps = 34/741 (5%)
Strand=Plus/Plus
Query 1 ACGTAAAACCATCTACATTTTTATATAGTTTGaa-aaaagtattaaaattgtagataaat 59
||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||
Sbjct 1 ACGTAAAACCATCTACAATTTTATATACTTTGAATTTTTTTATTAAAATTGTAGATAAAT 60
Query 60 ataaaaatataaattcgtcttctttaaaaatCATTCATCTTTAATCTTTTTT-CTTCAAG 118
||||||||||||| |||| |||||||||| |||||||||||||||||||||| |||||||
Sbjct 61 ATAAAAATATAAA-TCGTATTCTTTAAAATTCATTCATCTTTAATCTTTTTTGCTTCAAG 119
Query 119 AACACGATGAGCGATAACAAAACTCTTCTCCTGAGACAAATGGAACAAGAAGAAGATCGA 178
|||||||||||||| || |||| |||||||||||||| ||||| ||||| ||||||||
Sbjct 120 AACACGATGAGCGACAATAAAAATCTTCTCCTGAGACGAATGG---AAGAAAAAGATCGA 176
Query 179 GCAAGAAAACAAATCTCTGTTTTGTCCTCCAAAAGATCCCAAACTGCAAACGCAAACGCA 238
||||||||||||||||||||||| |||||||||||||||||||| | | ||||||||
Sbjct 177 GCAAGAAAACAAATCTCTGTTTTATCCTCCAAAAGATCCCAAAC--C--A--CAAACGCA 230
Query 239 AACGCAGCTGTAACAGCTCCGTCCGAGGTGGCGTTTAACGTTTGTTGTTTATGTGTTTAT 298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 AACGCAGCTGTTACAGCTCCGTCCGAGGTGGCGTTTAACGTTTGTTGTTTATGTGTTTAT 290
Query 299 TGTCCTCTTTGCGTTCTTTGGTGCTGCATCAAACAGCCTTGTACAATTGGATGGAGAGCC 358
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TGTCCTCTTTGTGTTCTTTGGTGCTGCATCAAACAGCCTTGTACAATTGGATGGAGAGCC 350
Query 359 ATTCTAAACGCTAAACGCAGATTAAGCGGTTGCAGCGGCTGCGGTAGAAGCTTTAGCAGG 418
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 ATTCTAAACGCCAAACGCAGATTAAGCGGTTGCAGCGGCTGCGGTAGAAGCTTTAGCAGG 410
Query 419 AGGGTTTTGGCAGCAGATTATTCGTCGTTTTCGGATATTGATTCCGATGATGTGAATTGC 478
||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 411 AGGGTTTTGGCTGCTGATTATTCGTCTTTTTCGGATATTGATTCTGATGATGTGAATTGC 470
Query 479 AAAGCTCATAATTGCTCAAAACGAAACCGGTGATTATAAAAT-TTCTATTGAGTTTTATA 537
||||||||||||||||||| |||||| |||||| || |||| || |||||||||| ||
Sbjct 471 AAAGCTCATAATTGCTCAACACGAAATCGGTGACTACAAAAAATT-TATTGAGTTTCATG 529
Query 538 AATTTCCCAAACTT--T----CT---A---AA-CGCTGACGCAAAACGCTGGAGTTGACT 584
|||||||||||||| | || | || ||| |||||||||||||||||||||||
Sbjct 530 AATTTCCCAAACTTCCTTTTTCTCTGATCTAAACGCCGACGCAAAACGCTGGAGTTGACT 589
Query 585 TCATA----AT---GCTGAGTTAATGAAAAATATCGAGATTAAGCTCTATTATTTCGATA 637
||||| || |||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 590 TCATAGTTCATAATGCTGAGTTGATGAAAAATCTCGAGATTAAGCTCTATTATTTCGATA 649
Query 638 ATTTAGAGAATAAAGATGTTGTTGTGATTGATTATATAAAGATGTATATATTACTTGGTG 697
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 ATTTAGAGGTTAAAGATGTTGTTGTGATTGATTATATAAAGATGTATATATTACTTGGTG 709
Query 698 AGGAATAAAGTTGtttttttt 718
| |||||||||||||||||||
Sbjct 710 AAGAATAAAGTTGTTTTTTTT 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5