BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474015

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G48770.1 | Symbols:  | Protein of unknown function (DUF1639)...   645    0.0  


> AT1G48770.1 | Symbols:  | Protein of unknown function (DUF1639) 
| chr1:18040285-18040916 FORWARD LENGTH=540
Length=540

 Score =  645 bits (349),  Expect = 0.0
 Identities = 477/532 (90%), Gaps = 36/532 (7%)
 Strand=Plus/Plus

Query  18   TGAAAGATCGAAGCGCCTCCACAACTTCTCTTTACCTCATCTCCGTTGGGGTCAACAGAG  77
            |||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct  15   TGAAAGATCGAAACGTCTCCACAACTTCTCTTTGCCTCAACTCCGTTGGGGTCAACAAAG  74

Query  78   ATTCCTCAGATGCGTCAATCTACCATCTCCTCCTCCTTCTTCTTCCTCTCCCGATCACGC  137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  75   ATTCCTCAGATGCGTCAATCTACCATCTCCTCCTCCTTCTTCTTCCTCTCCCGATCACGC  134

Query  138  AGCCACCAACAGATCCGTCTCC--A--T--AG-----C-T------ggaggaggaggagg  179
            ||||||||| ||||||||||||  |  |  ||     | |      ||||||||||||||
Sbjct  135  AGCCACCAATAGATCCGTCTCCATAGCTGGAGTTTCTCTTACAAGAGGAGGAGGAGGAGG  194

Query  180  agcgaggaACGGTGAGGTAGTTGCGGCGGCTAGGCCATGGAATCTGAGGATGAGAAGAGC  239
            ||||| |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct  195  AGCGAAGAACGGGGAGGTAGTTGCGGCGGCTAAGCCATGGAATTTGAGGATGAGAAGAGC  254

Query  240  TGCGTGTAGTGAACCTGGAGATGAATCAGCGGCGAAGATTGAAATTGGCGTTAA-GA-AG  297
            |||||||||||||||| | || | |  |     ||| |||||||||||||||||  | ||
Sbjct  255  TGCGTGTAGTGAACCT-G-GA-G-A--A-----GAA-ATTGAAATTGGCGTTAATAAGAG  302

Query  298  -AGAAGTATCATCGATAATGAAGAT---GGAGGAGATAAGAAGAATGAGAAATCGAAATT  353
             ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||
Sbjct  303  AAGAAGTATCATCGATAATGAAGATGGAGGAGGAGATAAGAAGAATGAGAAATCGAAATT  362

Query  354  ATCTATTTCGTTGTTGAGAGATGAAATTGAACAAGATTTCTCCATTGCTTTTGGGAAAAA  413
             |||||| |||||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct  363  CTCTATTGCGTTGTCGAGAGATGAAATTGAACAAGATTTCTCCTTTGTTTTTGGGAAAAA  422

Query  414  ACCTCCAAAGAGACCTAAGAAGAGACCAAGGCTTGTTCAGAAGAAATTGAATACGATTTT  473
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  423  ACCTCCCAAGAGACCTAAGAAGAGACCAAGGCTTGTTCAGAAGAAATTGAATACGATTTT  482

Query  474  TCCAGGATTGTGGTTGAATGAAGAAGAAGTGACTATTGATTCATATAATGGA  525
            ||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  483  TCCAGGATTGTGGTTGAATGAAGAAGAAGTGACGATTGATTCGTATAATGGA  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5