BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474016
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48780.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1144 0.0
> AT1G48780.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G18300.1);
Has 89 Blast hits to 89 proteins in 11 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 86; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:18041989-18042744
FORWARD LENGTH=756
Length=756
Score = 1144 bits (619), Expect = 0.0
Identities = 723/769 (94%), Gaps = 23/769 (3%)
Strand=Plus/Plus
Query 1 ATGATCTGCACAGAGGCTCTTCAGCGGATTTCGTTCTCGAGTGATCTTGGTCAATCGGAT 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATATGCACAGAGGCTCTTCAGCGGATTTCGTTCTCGAGTGATCTTGGTCAATCGGAT 60
Query 61 AAAGCACCCCCACCTGTAATAGAACCATCAGGCCTTATCCGAAGAGATGAAACTCTTCTT 120
|||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 61 AAAGCACCACCACCTGTGATAGAGCCATCAGGCCTTATCCGAAGAGACGAAACTCTTCTT 120
Query 121 GATTCATCAAACTCGGACTTCGAGTTCCATATCTCAAACAACTTTGATCCAGGAGACTCC 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 GATTCATCAAACTCGGACTTCGAGTTCCATATCTCAAACAGCTTTGATCCAGGAGACTCC 180
Query 181 TCACCAGCGGATGAGATCTTTGCGGATGGCATGATCCTTCCTTTCCATGTAACTGCAGCT 240
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 181 TCACCAGCGGATGAGATCTTTGCAGACGGTATGATCCTTCCTTTCCATGTAACTGCAGCT 240
Query 241 TCGACCGTGCCAAAACGTCTCTACAAGTACGAACTACCTCCCATTACATCCTCCCTTTCT 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 TCGACCGTGCCAAAACGTCTCTACAAGTACGAACTCCCTCCCATTACATCCTCCCTTTCT 300
Query 301 CCATCTCCTCTCTCGCCACAACCGTTGCCCACAAAACACAGCGAAAAGGAAACCAACGGG 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 CCATCTCCTCTCTCGCCACAACCGTTACCCACAAAACACAGCGAAAAGGAAACCAACGGG 360
Query 361 CGAGCGAGCGGAGCAAACTCTGACTCAGAAGCAGAGAAGTCATCAAAATCGTTTTGGAGT 420
|||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 AGAGCAAGTGGAGCAAACTCTGACTCAGAAGCAGAGAAGTCATCAAAGTCGTTTTGGAGT 420
Query 421 TTCAAGAGAAGCTCGAGCCTAAACTGCGACATAAAGAAGAGTCTCATCTGTTCGTTTCCT 480
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCAAGAGAAGCTCCAGCCTCAACTGCGACATAAAGAAGAGTCTCATCTGTTCGTTTCCT 480
Query 481 CGGCTCACGAGAAGCAACTCTACAGGTTCGGTTACTAATTCTAAGAGAGCAATGCTGAGA 540
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGGCTGACAAGAAGCAACTCTACAGGTTCGGTTACTAATTCTAAGAGAGCAATGCTGAGA 540
Query 541 GATGTTAACAACCATAGGCCCTCTTCTCGGTCGTCTTCTTCCTCTATCTGTTGCAATGCG 600
|||||||||||||||||||||||||||||||| || ||| || | |||||||
Sbjct 541 GATGTTAACAACCATAGGCCCTCTTCTCGGTC--CT-CTTGCT------G---CAATGCG 588
Query 601 TATCAGTTCAGACCGCAAAAGCACGCAGGAAAGAAAGGTGAAGGAGGAGGAAGCTTTTC- 659
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 589 TATCAGTTCAGACCTCAAAAGCACACAGGAAAGAAAGGTGAAGGAGGAGGAAGCTTCTCC 648
Query 660 GATCATTCCAGTCCTCAATGGTCCATCTACATTTGGGTTAGGATCGATCTTACGCCATTC 719
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 G-TCATTCCAGTCCTCAATGGTCCATCTACATTTGGGTTAGGATCGATCTTACGCCATTC 707
Query 720 GAA----A--GATAAGACGAAGACAAAGAAGAAGAA---CAAGAAGTAG 759
||| | |||||||||||||||||||||||||| ||||||||||
Sbjct 708 GAATTCGAAAGATAAGACGAAGACAAAGAAGAAGAAGAACAAGAAGTAG 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5