BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474017
Length=1994
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48790.1 | Symbols: AMSH1 | associated molecule with the SH3... 3199 0.0
> AT1G48790.1 | Symbols: AMSH1 | associated molecule with the SH3
domain of STAM 1 | chr1:18043672-18047659 REVERSE LENGTH=2009
Length=2009
Score = 3199 bits (1732), Expect = 0.0
Identities = 1915/2002 (96%), Gaps = 17/2002 (1%)
Strand=Plus/Plus
Query 1 CCCTCGAAAGAAAGTCAAATTACTCAACAGCGTCGTTTCTTCTTGTTCATCGCCAATCGC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 8 CCCTCGAAAGAAAGTCAAATTACTCAACAGCGTCGTTTCTTCTTGTTTATCGCCAATCGC 67
Query 61 CATTA--ATCGCGGTGCCTCTTCTCTCCTCTCGCCGACTCTTTGGACCGGAGGTTTCCTC 118
||||| |||||||||||||||||| || ||||||| ||||||| |||||||||||||||
Sbjct 68 CATTATTATCGCGGTGCCTCTTCTCACCCCTCGCCGTCTCTTTGAACCGGAGGTTTCCTC 127
Query 119 CACCCTGTGACAATTCCGTCATCGATTGACCTCGAGCTCCGAGATCTGATCTTCAATTTG 178
|||||| ||| |||||| |||||||||||||| |||| ||||||||| | |||||||||
Sbjct 128 CACCCTTTGAAAATTCCATCATCGATTGACCTATAGCTACGAGATCTGCTTTTCAATTTG 187
Query 179 ATGCTCTTCCATTAG-TCGGAAAGTTGCTTTTGATTTCTCTTGTCGAAGCAACTATGGGG 237
||||||||||||||| | | |||||||||||||| || | | |||||||||||||
Sbjct 188 ATGCTCTTCCATTAGTTAGAAAAGTTGCTTTTGA----TC--G--G-AGCAACTATGGGG 238
Query 238 TCGTCTTCTGAGATCATCGATATCGCAACTAGTGCTCGGAGAATTGGCGTAGATAATCGT 297
||||||| ||||| |||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 239 TCGTCTTTTGAGACCATCGATATCGCTACCAGTGCTCGGAGAATTGGCGTAGATAATCGT 298
Query 298 ATTTCTCTCAAATTTTACTTCAGGATCGCTGATAATATCCTCAAACAGGCCAACATATTT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATTTCTCTCAAATTTTACTTCAGGATCGCTGATAATATCCTCAAACAGGCCAACATATTT 358
Query 358 CGGGCAGAGAAGAATGTTATTGATTTATATGTCATGCTTCTGCGTTTTTCAAGCTTGGCT 417
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 359 CGGGCAGAGAAGAATGTTATTGATTTATATGTCATGCTTCTGCGGTTTTCAAGCTTGGCT 418
Query 418 CTCGAGACTATACCGTCCCATCGAGATTACAGAACATCTCTAAAAAGCAACAAAGAGTAT 477
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 419 CTCGAGACTATACCGTCCCATCGAGATTACAGAACATCTCTAAAAAGCAATAAAGAGTAT 478
Query 478 TTGAGAATGAGACTATTGGATGTCTTGACGGAGCTGGAGAAGTTGAAACCAGTTGTACAG 537
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTGAGAATGAGACTACTAGATGTCTTGACGGAGCTGGAGAAGTTGAAACCAGTTGTACAG 538
Query 538 CAAAGGATTGATGAACTGTATCCCAAGCTCAAGCCTCGATATAATGTACAAGCTCATCCA 597
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 539 CAAAGGATTGATGAACTGTATCCCAAGCTCAAACCTCGATATAACGTTCAAGCTCATCCA 598
Query 598 TCAAATGGTTCCCTAGGCTGGTCTTCGGCCGTGAAACCATCATTAAATAGCTATGATCAT 657
||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 599 GCAAATGGTTCCCTAGGCTGGTCTTCTGCCGTGAAACCGTCATTTAATAGCTATGATCAT 658
Query 658 GCAAAGGTAAGAAATCCTCCTGGACATAATTTTGGCTACATGGGTTCCAGGGGTCAGCAA 717
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 GCAAAGGTAAGAAATCCTCCTGGACATAATTCTGGCTACATGGGTTCCAGGGGTCAGCAA 718
Query 718 TTTTTGAATGCTGCACCACTTGAAGAGCGTTTCCGAAAGATGTCGGTGAACTTCCGACCA 777
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTTTGAACGCTGCACCACTTGAAGAGCGTTTCCGAAAGATGTCGGTGAACTTCCGACCA 778
Query 778 AATGAAGAAACCCTTTCCAAGCATTCTATCTTGGGTCCAGGTGGACTCTCTGCACAGTGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AATGAAGAAACCCTTTCCAAGCATTCTATCTTGGGTCCAGGTGGACTCTCTGCACAGTGG 838
Query 838 CAGCCTCCAAAGTATGATACAAAGGTTCAATATCCAAGCAATATAGATTTTTCGCCTGTT 897
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CAGCCACCAAAGTATGATACAAAGGTTCAATATCCAAGCAATATAGATTTTTCGCCTGTT 898
Query 898 GTAATCCCAAGCTTCCAACAATTTGTGGACAGCAAACCAATGATAACGAATGGCAGTAAC 957
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 899 GTAATCCCAAGCTTCCAACAACTTGTGGACAGCAAACCAATGATAACGAATGGCAGTAAC 958
Query 958 GATGAACCTGAAAGGCCAATTGTGGAACCAAGTGTTGCATCTAGTGAAAATATCCAGAAA 1017
||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||
Sbjct 959 GATGAACCTGAAAAGCCAATTGTGGAACCCAGTGTTGCATCTAATGAAAAAATCCAGAAA 1018
Query 1018 AATTACACTGAAGAGCTTTCTTCCATGATTTCTTTCGAAGAGCCAGAAAGCGTTACTGAT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1019 AATTACACTGAAGAGCTTTCTTCCATGATTTCTTTCGAAGAGCCAGAAAGCGTTAATGAG 1078
Query 1078 AATAATCTCATTAGGCAACCTTCACCACCTCCGGTGCTAGCAGAAGTTCAAGACTTGGTT 1137
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1079 AACAATCTCATTAGGCAACCTTCACCACCTCCAGTGCTAGCAGAAGTTCAAGACTTGGTT 1138
Query 1138 CCTGCTTTATGTCCTGAAGTTAGAGAACCGGAATGTATCATAGAAAACTCTCTGCCAGAT 1197
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1139 CCTGCTTTATGTCCTGAAGTTAGAGAACCGGAATGTATGATAGAAAACTCTCTGCCGGAT 1198
Query 1198 GAGTCTCTACGGTCGGAGTCTCCTCTTGAACTTCATATTGCAACAACAATGATGGATACC 1257
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1199 GAGTCTCTACGGTCGGAGTCTCCTCTTGAACTTCATATTGCGACTTCAATGATGGATACC 1258
Query 1258 TTTATGAGGCTTGCCAAGTCAAACACTAAAAAGAATTTAGAGACGTGTGGTATACTTGCT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1259 TTTATGAGGCTTGCCAAGTCAAACACTAAAAAGAATTTAGAGACGTGTGGTATTCTTGCC 1318
Query 1318 GGCTCACTGAAAAACAGAAAATTTTACATTACAGCTCTCATCATACCAAAGCAGGAATCG 1377
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GGTTCACTAAAAAACAGAAAATTTTACATTACAGCTCTCATCATACCAAAGCAGGAATCG 1378
Query 1378 ACATCTGACTCGTGTCAGGCCACAAACGAAGAAGAGATATTTGAAGTACAGGACAAGCAA 1437
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACATCTGACTCGTGTCAGGCCACGAACGAAGAAGAGATATTTGAAGTACAGGACAAGCAA 1438
Query 1438 TCCCTTTTCCCACTCGGATGGATTCATACGCATCCGACACAGTCTTGTTTCATGTCATCC 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TCCCTTTTCCCACTCGGATGGATTCATACGCATCCGACACAGTCTTGTTTCATGTCATCC 1498
Query 1498 ATTGATGTTCACACGCACTATTCATACCAGATTATGTTACCAGAAGCTGTGGCGATCGTT 1557
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1499 ATTGATGTTCACACACACTATTCATACCAGATTATGTTACCAGAAGCTGTGGCAATCGTT 1558
Query 1558 ATGGCGCCACAAGACTCTTCAAGGAATCACGGAATATTCCGGCTGACGACGCCGGGAGGA 1617
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1559 ATGGCGCCACAAGACTCTTCAAGGAATCACGGAATATTTCGGCTGACGACGCCGGGAGGA 1618
Query 1618 ATGACGGTGATAAGGAATTGTGACCAGCGTGGGTTTCATGCGCACAGTTCGCCGGCGGAC 1677
||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 1619 ATGACGGTGATAAGGAATTGTGACCGGCGTGGGTTTCATGCGCACAGTTCACCGGAGGAC 1678
Query 1678 GGAGGACCAATTTACAATACGTGTAAGGAAGTTTACATGAACCCTAATCTCAAGTTTGAT 1737
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1679 GGAGGGCCAATTTACAATACCTGTAAGGAAGTTTACATGAACCCAAATCTCAAGTTTGAT 1738
Query 1738 GTCATTGATCTCAGATAGCATCACTTGCGCGTTTGAGAGTGAAACTATGTTCTCAAGGCC 1797
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1739 GTCATTGATCTCAGATAGCATCACTTGCGCGTTTGAAAGTGAAACTATGTTCTCAAGGCC 1798
Query 1798 AT-TTT-CTCTACGATTGTAACAATTATGTATCTGTTTATATCCCGATTTTAATATGATT 1855
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 ATCTTTTCTCTACGATTGTAACAATTATGTATCTGTTTATATCCCGATTTTAATATGATC 1858
Query 1856 TATGTAAGTTTTCATGTACAAT--T-ATATGTTTACAAGTCTTACATGTAAAACTGAACT 1912
|| |||||||||| |||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 1859 TACGTAAGTTTTCGTGTACAATAATTATATGTTTACAAGGCTTACATGTAAAACTGAACA 1918
Query 1913 AAAATCAAGATACAAGAGCAAGTGATTTGTGATAAAGTTATCGTTGTGTCACCATCTATT 1972
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1919 AAAATCAAGATACAAGAGCAAGTGATTTGTGCTAAAGTTATCGTTGTGTCACCATCTATT 1978
Query 1973 CAAACCTACATAATATTATTAC 1994
||||||||| ||||||| ||||
Sbjct 1979 CAAACCTACGTAATATTTTTAC 2000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98794672560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5