BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474020
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48830.1 | Symbols: | Ribosomal protein S7e family protein ... 1125 0.0
AT5G16130.1 | Symbols: | Ribosomal protein S7e family protein ... 313 2e-84
> AT1G48830.1 | Symbols: | Ribosomal protein S7e family protein
| chr1:18059642-18061302 REVERSE LENGTH=891
Length=891
Score = 1125 bits (609), Expect = 0.0
Identities = 708/753 (94%), Gaps = 18/753 (2%)
Strand=Plus/Plus
Query 1 AGCTCTAGGGtttttttCTGC-G-GATTAGCTTCAGTATCCATTGGC-GATTTTGATC-C 56
|||| ||||||||||||| || | ||||||||||||||||||||||| || || | | |
Sbjct 1 AGCTTTAGGGTTTTTTTCAGCGGAGATTAGCTTCAGTATCCATTGGCGGA-TTAG-CCTC 58
Query 57 ACAGTGCTCTG----A---TTTGGAGGTTGCATTTGAGTGAAAAGAAGATGTTTTCGTTT 109
| ||||||||| | ||||||||||||||||||||| || ||||||||||| |
Sbjct 59 AGAGTGCTCTGATCAAGGTTTTGGAGGTTGCATTTGAGTG---AGGAGATGTTTTCGGCT 115
Query 110 CAGCATAAGATTCACAAGGAAAAGGGTGTGGAACTTTCTGAATTGGATGAGCAAGTTGCT 169
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 116 CAGCATAAGATTCATAAGGAGAAGGGTGTGGAACTTTCTGAATTGGATGAGCAAGTTGCT 175
Query 170 CAGGCTTTCTTTGATTTGGAGAACACCAATCAAGAATTGAAAAGTGAGTTGAAGGATTTA 229
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 176 CAGGCTTTCTTTGATTTGGAGAACACCAATCAAGAATTGAAAAGTGAGCTGAAGGATTTA 235
Query 230 TACGTCAACTCGGCTGTTCAAGTTGATATATCTGGAGGACGCAAGGCAATTGTTATCAAT 289
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 236 TACGTCAACTCGGCTGTTCAAGTTGATATCTCTGGAGGACGCAAGGCAATTGTTGTCAAT 295
Query 290 GTTCCTTACAGATTGAGAAAAGCTTACCGCAAAATCCATGTTAGGCTTGTTCGTGAACTT 349
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 296 GTTCCTTACAGACTGAGAAAAGCTTACCGGAAAATCCATGTTAGGCTTGTTCGTGAACTT 355
Query 350 GAGAAGAAGTTCAGTGGAAAGGATGTGATCCTCATTGCTACCAGGAGGATTGTGAGGCCA 409
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 356 GAGAAGAAGTTCAGTGGAAAGGATGTGATCCTCATTGCTACAAGGAGGATTGTGAGGCCG 415
Query 410 CCTAAGAAGGGCTCAGCTGCAAAGAGACCACGCAACCGTACTCTGACCTCAGTCCATGAA 469
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CCAAAGAAGGGTTCAGCGGCAAAGAGACCACGCAACCGTACTCTGACCTCAGTCCATGAA 475
Query 470 GCCATTCTTGATGATGTTGTCTTACCTGCAGAGATTGTTGGGAAGCGCACAAGGTACAGA 529
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GCTATTCTTGATGATGTGGTCTTACCTGCAGAGATTGTTGGGAAGCGCACAAGGTACAGA 535
Query 530 CTCGACGGTACCAAAATCATGAAGGTCTTCTTGGACCCAAAGGAAAGGAACAACACAGAG 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CTCGACGGTACCAAAATCATGAAGGTCTTCTTGGACCCAAAGGAAAGGAACAACACAGAG 595
Query 590 TACAAGGTTGAGGCTTTCTCTGCTGTTTACAAGAAGCTCACTGGCAAAGATGTCGTCTTT 649
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 596 TACAAGGTTGAGGCTTTCTCTGCGGTTTACAAGAAGCTCACTGGCAAAGATGTCGTCTTT 655
Query 650 GAGTTTCCCATCACTGAAGCCTAAGAGATGAACTGAGACGTAGAGAATCTGTTGTGATCT 709
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 656 GAGTTTCCCATCACTGAAGCCTAAGAGATGAAATGAGACGTAGAGAATCTGTTATGATCT 715
Query 710 CAGATATTT-AAGTCTTCTTTTTCATTTACTTT 741
||||||||| || ||||||||||| | ||||||
Sbjct 716 CAGATATTTTAA-TCTTCTTTTTCGTCTACTTT 747
> AT5G16130.1 | Symbols: | Ribosomal protein S7e family protein
| chr5:5268421-5270156 FORWARD LENGTH=946
Length=946
Score = 313 bits (169), Expect = 2e-84
Identities = 397/506 (78%), Gaps = 20/506 (4%)
Strand=Plus/Plus
Query 158 GAGCAAGTTGCTCAGGCTTTCTTTGATTTGGAGAACACCAATCAAGAATTGAAAAGTGAG 217
|||||||||||||||||||| ||||||||||||||||| || || || |||||||| |||
Sbjct 190 GAGCAAGTTGCTCAGGCTTTGTTTGATTTGGAGAACACTAACCAGGAGTTGAAAAGCGAG 249
Query 218 TTGAAGGATTTATACGTCAACTC-GGCTGTTCA-AGTTGATATATCTGGAGGA-CGCAAG 274
||||| ||| | ||| ||||| | |||||||| | | ||||| |||||| | |||||
Sbjct 250 TTGAAAGATCTCTACATCAAC-CAAGCTGTTCACA-TGGATATCTCTGGA-AACCGCAAA 306
Query 275 GCAATTGTTATCAATGTTCC-TTACAGATTGAGAAAAGCTTACCGCAAAATCCATGTTAG 333
|| |||| || | ||||| || ||||||||| ||||||| |||||| || ||| |
Sbjct 307 GCTGTTGTGATTTACGTTCCATT-CAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCG 365
Query 334 GCTTGTTC-GTGAACTTGAGAAGAAGTTCAGTGGAAAGGATGTGATCCTCATTGCTACCA 392
|| | || | || ||||||||||||||||||||||||||||| ||| | || | || |
Sbjct 366 TCTCG-TCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTTATCTTTGTTACCACAA 424
Query 393 GGAGGATTGTGAGGCCACCTAAGAAGGGCT-CAGCTGCAAAGAGACCACGCAACCGTACT 451
| ||||| || | || || |||||||| | | |||| |||| ||||| ||| | |||
Sbjct 425 GAAGGATCATGCGTCCCCCCAAGAAGGG-TGCTGCTGTTCAGAGGCCACGTAACAGAACT 483
Query 452 CTGACCTCAGTCCATGAAGCCATTCTTGATGATGTTGTCTTACCT-GCAGAGATTGTTGG 510
|| |||||||| |||||||| || ||||| ||||||| ||| || || |||||||||||
Sbjct 484 CTTACCTCAGTTCATGAAGCTATGCTTGAAGATGTTG-CTTTCCCCGCTGAGATTGTTGG 542
Query 511 GAAGCGCACAAGGTACAGACTCGACGGTACCAAAATCATGAAGGTCTTCTTGGAC-CCAA 569
||||| || | ||| | || || ||| |||| |||||||||||||| ||||| ||||
Sbjct 543 AAAGCGTACTCGCTACCGTCTTGATGGTTCCAAGATCATGAAGGTCTTTTTGGATGCCAA 602
Query 570 AGGAAAGGAACAACACAGAGTACAAGGTTGAGGCTTTC-TCTGCTGTTTACAAG-AAGCT 627
||||| ||||||||||||||||||| | ||| || | || | ||| ||| | || ||
Sbjct 603 -GGAAAAGAACAACACAGAGTACAAGCTCGAGACTATGGTCGG-TGTGTACC-GTAAACT 659
Query 628 CACTGGCAAAGATGTCGTCTTTGAGT 653
|||||||||||||| || |||||||
Sbjct 660 TACTGGCAAAGATGTTGTTTTTGAGT 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5