BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474030
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28667.1 | Symbols: | pseudogene, hypothetical protein | ch... 1358 0.0
AT5G28672.1 | Symbols: | transposable element gene | chr5:1070... 1166 0.0
AT5G28712.1 | Symbols: | transposable element gene | chr5:1076... 564 6e-160
AT2G07486.1 | Symbols: | transposable element gene | chr2:3117... 381 7e-105
AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.... 363 2e-99
> AT5G28667.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10690062-10691087 FORWARD LENGTH=1026
Length=1026
Score = 1358 bits (735), Expect = 0.0
Identities = 897/976 (92%), Gaps = 8/976 (1%)
Strand=Plus/Plus
Query 1 GAATGTCTCTTGATTGTTTTAGATCATTATGTGACATAATGGAAACACGTTATGGATTAC 60
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 10 GAATGTCTCTTGATTGTTTTAGATCAATATGTGACATAATGGAAACAAGTTATGGATTAC 69
Query 61 AACCTACATTGAATGTTAGCATTGAAGAGAGTGTTGCCATGTTTTTACGGATATGTGGAC 120
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 70 AACCTACATTGAATGTTAGCATTGAAGAGTGTGTTGCCATGTTTTTACGGATATGTGGAT 129
Query 121 ACAATGAAGTTCAAAGAGATGTTGGGTTACGATTTTTTGAAGTCCTTAGAGCGACAGAGT 180
||||||||| |||||||||||||||||| ||||||||||||| |||||||| |||| |||
Sbjct 130 ACAATGAAGGTCAAAGAGATGTTGGGTTGCGATTTTTTGAAGGCCTTAGAGTGACAAAGT 189
Query 181 TACTTGCTTGTGATTATATCAAGACTCCAACAAGACAAGAACTACGTCGAATTCCTGAAA 240
||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct 190 TACTTGCTTGTGATTGTATCAAGACGCCAACAACACAAGAACTACGTCGAATTCATGAAA 249
Query 241 AACTACAAATGGATCGAAGATATTGGCCATATTTCAGTGGATTTGTTGGAGCTATAGATG 300
|| ||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 250 AAGTACAAATGGATCGAAGATATTGGTCATATTTTAGTG-ATTTGTTGGAGCTATAGATG 308
Query 301 GAGTTCATGTATGTATTAAGGTGAAGCCTGAACTACAAGGAATGTATTGGAATCGACACG 360
|||||||||| ||| | |||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 309 GAGTTCATGTGTGT-T-AAGGTGAAGCCTAAACTACAAGGAATGTATTGGAATTGACACG 366
Query 361 ATAGAACATCGTTTAATATCATGGCAATATGCGATATAAATATGTTGTTTACATATGTTT 420
|||||||||| |||||||||||||| |||| |||||||||||||||||| |||||||||
Sbjct 367 ATAGAACATCATTTAATATCATGGCCGTATGTGATATAAATATGTTGTTTTCATATGTTT 426
Query 421 GGAATGGAGCACCTGGATCGTGTCACGATACAGCAGTTCTAACGATGGCACAAGATAATG 480
| ||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 427 GAAATAGAGCACATGGATCGTGTCACGATACAGTAGTTCTAACGATGGTACAAGATAATG 486
Query 481 ATTCTGAATTTCCTTTGCCTCCAAGAGACAAGTATTATGTAGTTGATTCTGGGTATCCAA 540
||| |||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||
Sbjct 487 ATTATGAATTTCCTTTGCCTCCTAGACACAAGTATTATGTAGTTGATTTTGGGTATCCAA 546
Query 541 ATAAACAAGGCTTTTTGGCACCTTATAGGTCTTCGCGGAACGGAGTTGTTAGGTATCACA 600
|||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||
Sbjct 547 ATAAACAAGGCTTTTTGGCACCTTATAGATCTTCGCGGAACAGAGTTGTTAAGTATCACA 606
Query 601 TATCACAATTCTACAATGGTCCTCCTCCTAGGAATAAACAGGAGTTGTTTAATCGATGTC 660
| ||||| |||||||||| |||| ||| |||||||||||| |||||||||||||||||||
Sbjct 607 TGTCACAGTTCTACAATGTTCCTTCTCTTAGGAATAAACAAGAGTTGTTTAATCGATGTC 666
Query 661 ATGCATCTCTACGTTCTGTTATTGAGAGGACATTTGGAGTTTGGAAGAAAAAATGGAGGA 720
|||||| | | | ||||| |||||| |||||||||| ||||||||||||||||
Sbjct 667 ATGCATGAAAAA-T-CA---ATTGAAAGGACAATTGGAGTTTGAAAGAAAAAATGGAGGA 721
Query 721 TTCTTTGTGAATTTCCCAGATATGATATTGATGTTCAAAAAAGAGTGGTAACGGCTACAA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 722 TTCTTTGTGAATTTCCCAGATATGATATTGATGTTCAAAAAAGAGTGGTAACAATTACAA 781
Query 781 TGGGACTACATAATTTTATCAGAATTTCGAATTATTTTGATGAGGATTTTGTTGAAGTAA 840
|||||||| ||||||||||||| ||||||||||||||||| ||| |||||| ||||| ||
Sbjct 782 TGGGACTATATAATTTTATCAGGATTTCGAATTATTTTGACGAGAATTTTGATGAAGGAA 841
Query 841 TGGGAGATACAAATATCAACAACATAAATTCTGAGAATGATCTTGATGACATGGAGAGAG 900
|| || ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 842 TGAGAAATACAAATATCAACAACGTAAATTCTGAGAATGATCTAGATGACATGGAGAGAG 901
Query 901 GTAGTAAACCTGACGGAAATTATATGGCAAATATAAGAGAAAATATTGCTGATATGTTAT 960
|| ||| |||||| | |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 902 GTGGTATACCTGATGAAAATTATATGGCAAATATAAGAAAAAATATTGTTGATATGTTAT 961
Query 961 GGGCAAATCAAAATAC 976
|||||| |||||||||
Sbjct 962 GGGCAACTCAAAATAC 977
> AT5G28672.1 | Symbols: | transposable element gene | chr5:10700385-10701826
FORWARD LENGTH=1442
Length=1442
Score = 1166 bits (631), Expect = 0.0
Identities = 760/823 (92%), Gaps = 5/823 (1%)
Strand=Plus/Plus
Query 152 ATTTTTTGAAGTCCTTAGAGCGACAGAGTTACTTGCTTGTGATTATATCAAGACTCCAAC 211
||||||||||||||||||||||||| || |||||||||||||||||||||| || |||||
Sbjct 409 ATTTTTTGAAGTCCTTAGAGCGACATAGATACTTGCTTGTGATTATATCAAAACGCCAAC 468
Query 212 AAGACAAGAACTACGTCGAATTCCTGAAAAACTACAAATGGATCGAA-GATATTGGCCAT 270
|| ||||||||||||||||||||||||| ||||| ||||||||| || ||||||| |||
Sbjct 469 AACACAAGAACTACGTCGAATTCCTGAATAACTATAAATGGATC-AACAATATTGGTCAT 527
Query 271 ATTTCAGTGGATTTGTTGGAGCTATAGATGGAGTTCATGTATGTATTAAGGTGAAGCCTG 330
|||| |||||||||||||||| |||| ||||||||||||||||| |||||||||||| |
Sbjct 528 ATTTTAGTGGATTTGTTGGAGGTATAAATGGAGTTCATGTATGTGTTAAGGTGAAGCATT 587
Query 331 AACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGCAATAT 390
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 588 AACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCAAGGCCATAT 647
Query 391 GCGATATAAATATGTTGTTTACATATGTTTGGAATGGAGCACCTGGATCGTGTCACGATA 450
| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 648 GTGATATAAATATGTTGTTTACATATGTTTGGAATGGAGCACTTGGATCGTGCCACGATA 707
Query 451 CAGCAGTTCTAACGATGGCACAAGATAATGATTCTGAATTTCCTTTGCCTCCAAGAGACA 510
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 708 CAGTAGTTCTAACGATGGCACAAGATAATGATTCTGAATTTCCTTTGCCTCCTAGAGATA 767
Query 511 AGTATTATGTAGTTGATTCTGGGTATCCAAATAAACAAGGCTTTTTGGCACCTTATAGGT 570
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 768 AGTATTATGTAGTTGATTCTGGGTATCCAAATAAACAAGGCTTTTTGGCATCTTATCGAT 827
Query 571 CTTCGCGGAACGGAGTTGTTAGGTATCACATATCACAATTCTACAATGGTCCTCCTCCTA 630
||||||||||| ||||| || |||||||||| ||||| |||||||||||||||||| ||
Sbjct 828 CTTCGCGGAACAGAGTT-TTCGGTATCACATGTCACAGCTCTACAATGGTCCTCCTCTTA 886
Query 631 GGAATAAACAGGAGTTGTTTAATCGATGTCATGCATCTCTACGTTCTGTTATTGAGAGGA 690
| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 887 GAAATAAACATGAGTTGTTTAATCGATGTCATGCATCTTTACGTTCTGTTATTGAAAGGA 946
Query 691 CATTTGGAGTTTGGAAGAAAAAATGGAGGATTCTTTGTGAATTTCCCAGATATGATATTG 750
| ||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 947 AAATTGGAGTTTGGAAGAAAAAATGGAGGATTCTTTATGAATTTTCTAGATATGATATTG 1006
Query 751 ATGTTCAAAAAAGAGTGGTAACGGCTACAATGGGACTACATAATTTTATCAGAATTTCGA 810
|||| ||||||| |||||||||| |||||||| |||||||||| ||||||||||| ||||
Sbjct 1007 ATGTCCAAAAAACAGTGGTAACGACTACAATGTGACTACATAACTTTATCAGAATGTCGA 1066
Query 811 ATTATTTTGATGAGGATTTTGTTGAAGTAATGGGAGATACAAATATCAACAACATAAATT 870
|||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1067 ATTATTTTGACGAGAATTTTGTTGAAGTAATAGGAGATACAAATATCAACAACATAAATT 1126
Query 871 CTGAGAATGATCTTGATGACATGGAGAGAGGTAGTAAACCTGACGGAAATTATATGGCAA 930
||||||||||||| |||||| | ||||| || ||| |||||| |||||| |||||||||
Sbjct 1127 CTGAGAATGATCTAGATGACC-GAAGAGAAGTGGTATACCTGATGGAAATCATATGGCAA 1185
Query 931 A-TATAAGAGAAAATATTGCTGATATGTTATGGGCAAATCAAA 972
| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 AATATAAGAGAAAATATTGCTGATATGTTATGGGCAAATCAAA 1228
Score = 248 bits (134), Expect = 7e-65
Identities = 149/156 (96%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 1 GAATGTCTCTTGATTGTTTTAGATCATTATGTGACATAATGGAAACACGTTATGGATTAC 60
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 225 GAATGTCTCTGGATTGTTTTAGATCATTATGTGACATAATGGAAACAAGTTATGGATTA- 283
Query 61 A-ACCTACATTGAATGTTAGCATTGAAGAGAGTGTTGCCATGTTTTTACGGATATGTGGA 119
| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 284 ATTCCTACAATGAATGTTAGTATTGAAGAGAGTGTTGCCATGTTTTTACGGATATGTGGA 343
Query 120 CACAATGAAGTTCAAAGAGATGTTGGGTTACGATTT 155
||||||||||||||||||||||||||||||||||||
Sbjct 344 CACAATGAAGTTCAAAGAGATGTTGGGTTACGATTT 379
> AT5G28712.1 | Symbols: | transposable element gene | chr5:10760797-10762070
REVERSE LENGTH=1274
Length=1274
Score = 564 bits (305), Expect = 6e-160
Identities = 565/689 (82%), Gaps = 24/689 (3%)
Strand=Plus/Plus
Query 153 TTTTTTGAAGTCCTTAGAGCGACAGAGTTACTTGCTTGTGATTATATCAAGACTCCAACA 212
||||||||||| || | ||| || || ||||||||||||||||||||||| |||||||||
Sbjct 397 TTTTTTGAAGTTCTGACAGCTACTGAATTACTTGCTTGTGATTATATCAAAACTCCAACA 456
Query 213 AGACAAGAACT-ACGTCGAATTCCTGAAAAACTACAAATGGATCGA-AGATATTGGCCAT 270
| ||||||| | || | | ||||||||| || | ||||| || ||||| ||| ||
Sbjct 457 ACACAAGAA-TGACATAGGATTCCTGAACGGCTGTAGTTGGAT-GACTGATATGGGCGAT 514
Query 271 ATTTCAGTGGATTTGTTGGAGCTATAGAT-GGAGTTCATGTATGTATTAAGGTGAAGCCT 329
|||| | ||||||||||||||||| ||| ||| |||||| ||| |||| ||||| ||
Sbjct 515 ATTTTACTGGATTTGTTGGAGCTACGGATGGGA-TTCATGCATGCGTTAATGTGAAACCC 573
Query 330 GAACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGCAATA 389
| | | ||||||||||||||||||| ||| |||| |||||| ||||| ||||||||||||
Sbjct 574 GCATTGCAAGGAATGTATTGGAATCAACATGATATAACATCTTTTAACATCATGGCAATA 633
Query 390 TGCGATATAAATATGTTGTTTACATATGTTTGGAATGGAGCACCTGGATCGTGTCACGAT 449
|| ||| |||||||||| || ||||||||||||||||||||||||||||| ||||| |||
Sbjct 634 TGTGATCTAAATATGTTATTCACATATGTTTGGAATGGAGCACCTGGATCATGTCATGAT 693
Query 450 ACAGCAGTTCTAACGATGGCACAAGATAA-TGATTCTGAATTTCCTTTGCCTCCAAG-AG 507
||| ||||||| |||||||||| | || |||| |||||||||| ||||||| | ||
Sbjct 694 ACAACAGTTCTTGTGATGGCACAAAAAAAATGATCCTGAATTTCCAATGCCTCCG-GCAG 752
Query 508 ACAAGTATTATGTAGTTGATTCTGGGTATCCAAATA-AACAAGGCTTTTTGGCACCT-TA 565
||||||| ||||| || |||||||| |||||| ||| || |||| |||||| | ||| ||
Sbjct 753 ACAAGTACTATGTTGTAGATTCTGGATATCCATATATAA-AAGGATTTTTGAC-CCTGTA 810
Query 566 TAGGTCTTCGCGGAAC-GGAGTTGTTAGGTATCACATATCACAATTCTA-CAATGGTCCT 623
|| |||| || ||| ||| | || || ||||| || |||||||| || || | || |
Sbjct 811 CAGATCTTTACGAAACAGGA-TAGTAAGTTATCATATGTCACAATT-TAACACTAATCAT 868
Query 624 CCTCCTAGGAATAAACAGGAGTTGTTTAATCGATGTCATGCATCTCTACGTTCTGTTATT 683
||||| ||||||||||| || ||||||||| |||| ||||| ||| | || |||||||||
Sbjct 869 CCTCCGAGGAATAAACATGAATTGTTTAATAGATGGCATGCTTCTTTGCGGTCTGTTATT 928
Query 684 GAGAGGACATTTGGAGTTTGGAAGAAAAAATGGAGGATTCTTTGTGAATTTCCC-AGATA 742
|||||||||||||| |||||||||||||| ||||||||||||| | || ||||| |||||
Sbjct 929 GAGAGGACATTTGGTGTTTGGAAGAAAAAGTGGAGGATTCTTTCT-AAGTTCCCTAGATA 987
Query 743 TGAT-ATTGATGTTCAAAAAAGAGTGGTAACGGCTACAATGGGACTACATAATTTTATCA 801
| || ||||| || |||||| |||||||| ||||||||||||||||| |||||||| |
Sbjct 988 T-ATTATTGAAGTGCAAAAAT-AGTGGTAATTGCTACAATGGGACTACAAAATTTTATTA 1045
Query 802 GAATTTCGAATTATTTT-GATGAGGATTT 829
||||||| |||| || ||||| |||||
Sbjct 1046 GAATTTCAAATT-TTCCAGATGAAGATTT 1073
> AT2G07486.1 | Symbols: | transposable element gene | chr2:3117080-3117673
REVERSE LENGTH=594
Length=594
Score = 381 bits (206), Expect = 7e-105
Identities = 476/603 (79%), Gaps = 31/603 (5%)
Strand=Plus/Plus
Query 162 GTCCTTAGAGCGACAGAGTTACTTGCTTGTGATTATATCAAGACTCCAACAAGACAAGAA 221
||||| | ||| ||| |||||||||||||| ||||||| |||||||||| ||| ||||||
Sbjct 4 GTCCTAACAGCTACATAGTTACTTGCTTGTAATTATATAAAGACTCCAAGAAGGCAAGAA 63
Query 222 CTACGTCGAATTCCTGAAAAACTACAAATGGATCGAAGATATTGGCCATATTTCAGTGGA 281
||||| |||||||||||| | | || | || | |||||||||| ||||||| ||||||
Sbjct 64 CTACGCCGAATTCCTGAACGATTGTAACTAGACCAAAGATATTGGTCATATTTTAGTGGA 123
Query 282 TTTGTTGGAGCTATAGATGGAGTTCATGTATGTATTAAGGTGAAGCCTGAACTACAAGGA 341
||||||||||| || |||||||||||||| ||| |||||||||| | |||| ||||| ||
Sbjct 124 TTTGTTGGAGCAATGGATGGAGTTCATGTTTGTGTTAAGGTGAAACGTGAATTACAAAGA 183
Query 342 ATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGCAATATGCGATATAAAT 401
||||||||| ||||||| | ||||||| || ||| | ||||||||||| | | | ||
Sbjct 184 ATGTATTGGGATCGACATGGGAGAACATTATTCAATGTTATGGCAATATGTGGTTTGAAC 243
Query 402 ATGT-T-G-TT-TA-CA-TATG--TTTGGAATGGA-GCACCTGGATCGTGTCACGATACA 452
|||| | | || | || | | |||| | || || | || | | | || |
Sbjct 244 ATGTATGGATTGGAGCACCAAGATTTTGTCA-CGATACAAC-AGA-CAACT-ATTATGTA 299
Query 453 GCAG-TTCTAACGATGGCA-CAAGATAATGATTCTGAATTTCCTTTGCCTCCAAGAGACA 510
| | ||| || |||| | ||||| ||||||||||||||| |||||||||||| |||||
Sbjct 300 GTTGATTC--ACAATGG-AGCAAGACAATGATTCTGAATTTTCTTTGCCTCCAACAGACA 356
Query 511 AGTATTATGTAGTTGATTCTGGGTATCCAAATAAACAAGGCTTTT--TGGCACCTTATAG 568
| ||||||||||||||||| || |||||| | |||||| |||| | || || ||||
Sbjct 357 ACTATTATGTAGTTGATTCCGGCTATCCACA-AAACAA-AATTTTCCT-GCTCCGTATAA 413
Query 569 GTCTTCGCGGAA-CGGAGTTGTT-AGGTATCACATATCACAATTCT-ACAATGGTCCTCC 625
| ||| || || ||| | || | |||||| | |||||||| | | |||||||||||
Sbjct 414 ATTTTCACGAAATAGGA-ATATTCA-GTATCATACGTCACAATT-TGAAAATGGTCCTCC 470
Query 626 TCCTAGGAATAAACAGGAGTTGTTTAATCGATGTCATGCATCTCTACGTTCTGTTATTGA 685
|||||| |||| || || ||||||||||||| |||||||||| |||||||||| |||||
Sbjct 471 TCCTAGAAATAGGCATGAATTGTTTAATCGATTTCATGCATCTTTACGTTCTGTGATTGA 530
Query 686 GAGGACATTTGGAGTTTGGAAGAAAAAATGGAGGATTCTTTGTGAATTTCCCAG-ATATG 744
||| ||||||||| ||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 531 GAGAACATTTGGAATTTGGAAGAAAAAATGGAGGATTCTTTGTGAATTTTC-AGGATATA 589
Query 745 ATA 747
|||
Sbjct 590 ATA 592
> AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.1,
blastp match of 34% identity and 6.6e-21 P-value to GP|21740634|emb|CAD40195.1||AL606611
OSJNBb0043H09.1 {Oryza sativa
(japonica cultivar-group)} | chr3:11627225-11630679 FORWARD
LENGTH=3455
Length=3455
Score = 363 bits (196), Expect = 2e-99
Identities = 322/383 (84%), Gaps = 8/383 (2%)
Strand=Plus/Plus
Query 152 ATTTTTTGAAGTCCTTAGAGCGACAGAGTTACTTGCTTGTGATTATATCAAGACTCCAAC 211
||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||||
Sbjct 2668 ATTTTTTGAGGTCCTTACAGCGACTGAGTTACTTACTTGTGATTATATCAAGACTCCAAC 2727
Query 212 AAGACAAGAACTACGTCGAATTCCTGAAAAACTACAAATGGATCGAAGATATTG-GCCAT 270
||||||||||||| ||||||| |||| || | ||| | | |||||||||| | |||||
Sbjct 2728 AAGACAAGAACTATACCGAATTCATGAACAATTGCAAGTAGCTCGAAGATAT-GAGCCAT 2786
Query 271 ATTTCAGTGGATTTGTTGGAGCTA-TAGATGGAGTTCATGTATGTATTAAGGTGAAGCCT 329
|||| | ||||||| ||||||| | | |||||||||||||| || |||||||||| ||
Sbjct 2787 ATTTTAATGGATTTATTGGAGCAAAT-GATGGAGTTCATGTCTGCGTTAAGGTGAAACCC 2845
Query 330 GAACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGCAATA 389
|| |||||||||| |||||| ||||||| | ||||||||| || || |||||||||||
Sbjct 2846 GAGTTACAAGGAATATATTGGGATCGACATGGTAGAACATCATTCAACGTCATGGCAATA 2905
Query 390 TGCGATATAAATATGTTGTTTACATATGTTTGGAATGGAGCACCTGGATCGTGTCACGAT 449
|| ||| | ||||||||||| ||||||||||||||| ||| ||| |||| | ||| |||
Sbjct 2906 TGTGATTTGAATATGTTGTTCACATATGTTTGGAATTGAGTACCAAGATCTTATCATGAT 2965
Query 450 ACAGCAGTTCTAACGATGGCACAAGATA-ATGATTCTGAATTTCCTTTGCCTCCAAGAGA 508
||||||||||| || || |||||||| | | ||||||||||||| ||||| ||||| |||
Sbjct 2966 ACAGCAGTTCTCACAATCGCACAAGACAGA-GATTCTGAATTTCTTTTGCTTCCAACAGA 3024
Query 509 CA-AGTATTATGTAGTTGATTCT 530
| | |||||| |||||||||||
Sbjct 3025 AATA-TATTATCTAGTTGATTCT 3046
Score = 244 bits (132), Expect = 9e-64
Identities = 238/288 (83%), Gaps = 12/288 (4%)
Strand=Plus/Plus
Query 570 TCTTCGCGGAACGGAGTTGTT-AGGTATCACATATCACAATTCT-ACAATGGTCCTCCTC 627
||||| || ||| ||||| || | ||||| || ||||||| | | |||| ||||||||
Sbjct 3054 TCTTCACGAAACAGAGTTATTCA-TTATCATATGGCACAATT-TGAAAATGCTCCTCCTC 3111
Query 628 CTAGGAATAAACAGGAGTTGTTTAATCGATGTCATGCATCTCTACGTTCTGTTATTGAGA 687
|||||||||| ||| | | ||||||||||||||||||||| |||||| | |||||||||
Sbjct 3112 CTAGGAATAAGCAGAAACTATTTAATCGATGTCATGCATCTTTACGTTTTATTATTGAGA 3171
Query 688 GGACATTTGGAGTTTGGAAG-AAAAAATGGAGGATTCTTTGTGAATTTCCCAGATATGA- 745
|| |||||||| |||||||| |||||||| ||||||||||||||| || | |||||| |
Sbjct 3172 GGTCATTTGGAATTTGGAAGAAAAAAATGAAGGATTCTTTGTGAA-TTACTAGATAT-AC 3229
Query 746 TATTGATGTTCAAAAAAGAGTGGTAACGGCTACAATGGGACTACATAATTTTATCAGAAT 805
|| | ||| ||||| ||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct 3230 TACTCTTGTGCAAAAGAGAGTAGTAATGGCTACAATGGGACTACATAATTTTATCATAAT 3289
Query 806 TTCGAATTATTTTGATG-AG-GATTTTGTTGAAGTAATGGGAGATACA 851
||| || ||||| || | ||||||| |||||||||||||| |||
Sbjct 3290 TTCAAA--ATTTTCATATAAAGATTTTGGAGAAGTAATGGGAGAAACA 3335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47772673797
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5