BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474031

Length=865
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G32904.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   599    2e-170


> AT3G32904.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G30520.1); 
Has 249 Blast hits to 117 proteins in 25 species: 
Archae - 0; Bacteria - 16; Metazoa - 73; Fungi - 5; Plants 
- 112; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). 
| chr3:13451438-13452807 REVERSE LENGTH=993
Length=993

 Score =  599 bits (324),  Expect = 2e-170
 Identities = 393/427 (92%), Gaps = 2/427 (0%)
 Strand=Plus/Plus

Query  1    ATGGGCAATTATCGTTTCAAAGATCCTACACCCCTTGGTAGAGAATTTATCGTTGACAAG  60
            ||||| ||||| ||||||||||||||||||   |||||||||||||||||| ||||||||
Sbjct  1    ATGGGAAATTACCGTTTCAAAGATCCTACAATTCTTGGTAGAGAATTTATCCTTGACAAG  60

Query  61   TTTAACAAGGAGTTTAATCTAAACATAAATTATCGGTTCTTCAAAGAAAAACTTGATCAA  120
            |||||||||||||||||||| || ||||||||||  ||| ||||||||||||||||||||
Sbjct  61   TTTAACAAGGAGTTTAATCTTAATATAAATTATCAATTCGTCAAAGAAAAACTTGATCAA  120

Query  121  CTAAAAAGAAAATACAAGAAATACAAGCATCTTATGAAAGATTCCACGGGCATCTCGGTT  180
            ||||||||||| |||||||| |||||| | ||||||||| | ||||||||||| ||||||
Sbjct  121  CTAAAAAGAAAGTACAAGAAGTACAAGGAGCTTATGAAAAACTCCACGGGCATTTCGGTT  180

Query  181  GATACTACTACATCTGTGATATCGGCATCTAACTCATGGTGGAAAGAGCGTGAACCTCAA  240
            |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||
Sbjct  181  GATACTACTACATCTGTGATATCAACATCTAACTCATGGTGGCAAGAGCGTGAACCTCAA  240

Query  241  TTCTCTGTGAACCAAAGAAGAGAACAGCTGAG-GAATGATGGTCTGGATAATGATGAAGG  299
            ||||||||||||||||||||||||||| || | |||||||||| |||| |||||||||||
Sbjct  241  TTCTCTGTGAACCAAAGAAGAGAACAGTTG-GTGAATGATGGTTTGGACAATGATGAAGG  299

Query  300  TCATGTATACTTTGAAACATATGATGGTGATATGCAAGACAGTCAAGTTCCTGAGACACA  359
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  300  TCATGTATACTTTGAAACATATGATGGTGATATGCAAGACAGTCAAGTTCTTGAGACACA  359

Query  360  AGAAAATGAAGAGATTCCTACATCCAGAATTCAACAACGAGGTGGAGTCAGGCGGGGAAG  419
            |||||| ||||||||||| || || ||||||||||||||||||||| | ||||| |||||
Sbjct  360  AGAAAACGAAGAGATTCCCACGTCTAGAATTCAACAACGAGGTGGACTAAGGCGTGGAAG  419

Query  420  TAGTTCG  426
            |||||||
Sbjct  420  TAGTTCG  426


 Score =  595 bits (322),  Expect = 2e-169
 Identities = 389/422 (92%), Gaps = 2/422 (0%)
 Strand=Plus/Plus

Query  429  TGGATCACGAGGAAGTCGTAGAAAACAATCATTTGAAACAACCCTAACAGATACAATAAC  488
            ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  465  TGGTTCACGAGGAAGTCGTAGAAAACAATCATTTGAGACAACTCTAACAGATACAATAAC  524

Query  489  TGGCTTCAGAGAGTTTCAACGCCAAAGTTTACAACAGTTGCGCCCGAAtttttttGACGA  548
            |||||| ||||||||||| |||||||||||||||||| |||||||||||| ||||||| |
Sbjct  525  TGGCTTAAGAGAGTTTCAGCGCCAAAGTTTACAACAGATGCGCCCGAATTGTTTTGACAA  584

Query  549  GGCTGATTACAACGAATTCGATATGGCTGTGAAGATATTTGAATCAATGGCCCTTCCGAA  608
             | |||||||||| |||||||||||||| ||||| ||||||||||||||  |||||||||
Sbjct  585  AGATGATTACAACAAATTCGATATGGCTATGAAGTTATTTGAATCAATGAACCTTCCGAA  644

Query  609  TGACACTGATTTTTATTGGGCTTGCATGCATGCATTTAAGGAAGAAAGATTTTGGCGTAA  668
            ||||||||||||||||||||||||||| ||||||||||||| |||||  |||||||||||
Sbjct  645  TGACACTGATTTTTATTGGGCTTGCATTCATGCATTTAAGGCAGAAATTTTTTGGCGTAA  704

Query  669  GTACTTCATTGATAGAGCTGAAAGAACCATCGAAGATAAGCTGAAATTTTTACAAGCTCT  728
            |||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct  705  GTACTTCATTAATAGAGCTGAAAGAACCGTCGAAGATAATCTGAAATTTTTACAAGCTCT  764

Query  729  TACTGGATATACACCG-GACAGTGAATATGTGGGAAAACGTCAATGGGGTCCTGGTATTC  787
            |||| || |||||| | || | ||||||||||||||||||||||||||||| |||| |||
Sbjct  765  TACTAGAGATACAC-GAGATAATGAATATGTGGGAAAACGTCAATGGGGTCATGGTTTTC  823

Query  788  AACAATGGGGAACACCTCCAACTGGTCCGCAATGGAATTCACCTTCAAATGTCCCACAAT  847
            ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||
Sbjct  824  AACAATGGGGAACACCTCCTACTGCTCCGCAATGGAATTCACCTTCAAATGTTCCACAAT  883

Query  848  GG  849
            ||
Sbjct  884  GG  885



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42196683480


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5