BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474037
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like... 2599 0.0
> AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like
1 | chr1:18098095-18101623 FORWARD LENGTH=1966
Length=1966
Score = 2599 bits (1407), Expect = 0.0
Identities = 1789/1966 (91%), Gaps = 55/1966 (3%)
Strand=Plus/Plus
Query 1 AAATATCTTCACGCAGCTGTCTAGGGTTTTTCGCCTCTTTCTCAACTCTC-TCTCGAAAA 59
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3 AAATATCTTCACGCAGCTGTCTAGGGTTTTTCGCCTCTTTCTCAACTCTCTTCTCGAAAA 62
Query 60 CCTAGCAGTCGTCTCTTTCTTAGTTCTCCATGGGCAAGTCTAAATCCGCCACCAAAGTTG 119
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 63 CCTAGCAGTCGTCTCTTTCTCAGTTCTCCATGGGAAAGTCTAAATCCGCCACCAAAGTTG 122
Query 120 TTGCAGCTCCTGCTGCCACTAAGCCTTTGAAGAAAGGCAAGAGAGAGCCTGAGGATGATG 179
|||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 123 TTGCAGAGATTAAGGCCACTAAGCCTTTGAAGAAAGGCAAGAGAGAGCCTGAAGATGATA 182
Query 180 TTGATACCAAAGTGAATCTTAAGAAGCAGAAGAAAGACGTGATTGCTGCTGTTCAGAAGG 239
|||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 183 TTGACACCAAAGTGAGTCTTAAGAAGCAGAAGAAAGACGTGATTGCTGCTGTCCAGAAGG 242
Query 240 AAAAAGCTGTGAAGAAGGTGCCTAAGAAGGTTGAGAGCTCTGACTCA-TCAGACTCTGAA 298
||||||||||||||||||| ||||||||||||||||||||||| | | ||||| ||||||
Sbjct 243 AAAAAGCTGTGAAGAAGGTTCCTAAGAAGGTTGAGAGCTCTGA-TGATTCAGATTCTGAA 301
Query 299 TCTGAGGAAGATGAGAAGGCTAAGAAAGTTCCAGCTAAGAAGGCTGCTTCAAGCAGTGAA 358
||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 302 TCTGAGGAAGAGGAGAAGGCTAAGAAAGTCCCAGCCAAGAAGGCTGCTTCAAGCAGTGAT 361
Query 359 GATTCATCTGATGACTCTTCCTCAGATGATGAGCCTGCACCCAAGAAGGCCGTAGCTGCT 418
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 362 GAGTCATCTGATGACTCTTCTTCAGATGATGAACCTGCACCCAAGAAGGCCGTTGCTGCT 421
Query 419 ACTAACGGAACTGTTGCTAAGAAGTCTAAGGATGACTCATC-T--TCTGATGATGATTCG 475
||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct 422 ACTAACGGAACTGTTGCAAAGAAGTCTAAGGATGACTCATCATCATCTGATGATGATTCT 481
Query 476 TCAGACGAGGAAGTTGCTG-CAACCAAGAAGCctgctgctgctgc------t-g--ctAA 525
||||||||||||||||||| | ||||||||||| || |||||||| | | ||
Sbjct 482 TCAGACGAGGAAGTTGCTGTC-ACCAAGAAGCCCGCAGCTGCTGCTAAAAATGGCTCTGT 540
Query 526 AAAGGCCAAGGCTGAGAGTTCGTCTGAAGATGATTCATCTTCTGAAGAAGAACCTGCAAA 585
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 541 AAAGGCCAAGAAAGAGAGTTCGTCTGAAGATGATTCATCTTCTGAAGACGAACCTGCGAA 600
Query 586 GAAACCAGCTGCTAAGAGTGCCAAGCCGGCTGCCAAAGATTCTTCTTCCTCTGATGAGGA 645
|||||| |||||||||| ||||||||| ||||| || |||||||| ||||||||||| ||
Sbjct 601 GAAACCTGCTGCTAAGATTGCCAAGCCAGCTGCTAAGGATTCTTCATCCTCTGATGATGA 660
Query 646 CTCAGATGATGATTCTGAGGATGAGAAGCCTGCTACCAAGAAGGCAGCTCCTGCTGCTAC 705
||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 661 CTCAGATGAGGATTCCGAGGATGAGAAACCTGCTACCAAGAAGGCAGCTCCTGCTGCTGC 720
Query 706 CAAGGCTGCAAGCAGCTCAGATTCATCAGAAGAAGATTCTGATGAGGAAAGTGAAGATGA 765
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 721 CAAGGCTGCAAGCAGCTCAGATTCATCAGATGAAGATTCTGATGAGGAAAGTGAAGATGA 780
Query 766 GAAACCTTCCCAGAAGAAGGCTGATACTAA-GACTGCTAAAAAGGAGAGCAGTAGTGATG 824
||||||| ||||||| |||||||| ||||| | || ||||||| | | ||||||||||
Sbjct 781 GAAACCTGCCCAGAAAAAGGCTGACACTAAGGCCT-CTAAAAA--ATCG-AGTAGTGATG 836
Query 825 ATTCTAGCGAATCTGAGGAATCTGAGAGTGAAGACGAGAAAGAAACCCC-AATGAAAAAG 883
| || ||||| ||||||||| |||||||||||||||| | |||||||| || |||||||
Sbjct 837 AGTCAAGCGAGTCTGAGGAAGATGAGAGTGAAGACGAGGAGGAAACCCCTAA-GAAAAAG 895
Query 884 AGCTCTGATGTAGAAATGGTTGATGCTGAGAAATCAAGTGCTAAACAGCCAAAGACCCCT 943
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 896 AGCTCTGATGTAGAAATGGTTGATGCTGAGAAATCAAGTGCTAAACAGCCAAAGACACCA 955
Query 944 TCCACTCCTGCTGCTGGTGGATCAAAGACACTCTTTGCTGCCAATCTTTCTTTCAATATT 1003
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||
Sbjct 956 TCCACTCCTGCTGCTGGAGGATCAAAGACACTCTTTGCTGCCAATCTCTCTTTTAACATT 1015
Query 1004 GAAAGATCAGATGTCGAGAATTTCTTCAAAGAAGTTGGTGAAGTTGTTGATGTTAGATTC 1063
|||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1016 GAAAGAGCAGATGTTGAGAATTTCTTCAAAGAAGCTGGTGAAGTTGTTGATGTTAGATTC 1075
Query 1064 TCTACCAATAGAGATGATGGTAGTTTCAGGGGATTTGGCCATGTTGAGTTCGCTTCTTCC 1123
|||||||| ||||| |||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1076 TCTACCAACAGAGACGATGGTTCTTTCAGGGGATTTGGCCATGTTGAGTTCGCATCTTCT 1135
Query 1124 GAAGAAGCACAGAAGGCGCTGGAATTCCACGGTAGGCCTTTGCTCGGTCGTGAGATTCGT 1183
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 1136 GAAGAAGCACAGAAGGCGCTTGAATTCCATGGTAGGCCATTGCTCGGTCGTGAGATTCGT 1195
Query 1184 CTTGATATTGCTCAGgagagaggtgagagaggcgagagaCCTGCATACACTCCACAAAGC 1243
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1196 CTTGATATTGCTCAGGAGAGAGGTGAGAGAGGCGAGAGACCCGCATTCACTCCACAAAGC 1255
Query 1244 GGCAACTATAA-AAGTGGTGGTGATGGTGGTGATGaaaa-aaaGGTTTTCGTTAAGGGAT 1301
||||||| | | ||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1256 GGCAACT-TCAGAAGTGGTGGTGATGGTGGTGATGAAAAGAAAA-TTTTCGTTAAGGGAT 1313
Query 1302 TTGACTCTTCACTTTCTGAAGATGATATCAGGAACGCTTTGACTGAACATTTCAGTTCAT 1361
||||| ||||||||||||| |||||||||| |||| |||||| ||||||||||||||||
Sbjct 1314 TTGACGCTTCACTTTCTGAGGATGATATCAAGAACACTTTGAGGGAACATTTCAGTTCAT 1373
Query 1362 GTGGAGAGGTGAAAACTGTATCTGTTCCAATGGACCGTGAAACTGGCAACTCCAAAGGTA 1421
|||||||| | |||| ||||||||||||||| |||||||| ||||| ||||||||||| |
Sbjct 1374 GTGGAGAGATCAAAAATGTATCTGTTCCAATTGACCGTGACACTGGTAACTCCAAAGGAA 1433
Query 1422 TTGCTTACGTCGAGTTTTCAGAAGGCAAAGAGAAGGCGTTGGAATTAAATGGAAGTGACA 1481
|||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1434 TTGCTTACCTTGAGTTTTCAGAAGGCAAAGAGAAGGCGTTGGAACTAAATGGAAGTGATA 1493
Query 1482 TGGGAGGATGGAGTT-TA----GTAGTCGATGAGCCTAGACCGAGAG-ATA-A-CAGTGG 1533
|||||||| ||| || || ||||||||||||||||||||||||| | | | ||||||
Sbjct 1494 TGGGAGGA-GGA-TTCTATCTTGTAGTCGATGAGCCTAGACCGAGAGGAGATAGCAGTGG 1551
Query 1534 TGGTGG---ATTTGGAAGGGGTAATGGTCGTTTTGGTAACAGTGGTGGCAGAGGAAGAGA 1590
|||||| |||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct 1552 TGGTGGTGGATTTGGAAGGGGCAATGGTCGTTTCGGTAGTGGTGGTGGCAGAGGAAGAGA 1611
Query 1591 TGGAGGCCGTGGTCGTTTTGGTAACAGTGGTGGCAGGGGAAGAGATGGAGGCCGTGGTCG 1650
|||||| |||||||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct 1612 TGGAGGTCGTGGTCGTTTTGGTAGTGGTGGTGGCAGAGGAAGAGATGGAGGTCGTGGTCG 1671
Query 1651 TTTTGGCAGTGGTGGTGGCAGGGGAAGAGATGGTGGTCGTGGAAAACCTAGTTTT--TC- 1707
|||||| |||||||||||||||||||| ||| |||||||||||| |||||||||| ||
Sbjct 1672 TTTTGGTAGTGGTGGTGGCAGGGGAAGTGATCGTGGTCGTGGAAGACCTAGTTTTACTCC 1731
Query 1708 --A-GGTAAGAAGACTACCTTCGGTGATTTCGAGTAGAAGCTTCTGTAGAAGAAAAGTCT 1764
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1732 CCAAGGTAAGAAGACTACCTTCGGTGA---CGAGTAGAAGCGTCTGTAGAAGAAAAGTCT 1788
Query 1765 CTTCTTATGTTGTTAACTTGTGATACTTCGCTTCCTTTTATTGTTTCGTTTCTTTTTTGT 1824
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1789 CTTCTTATGTTGTTAACTTATGATACTTCGCATCCTTTTATTGTTTCGTTTCTTTTTTGT 1848
Query 1825 TCTAGTTACGTTTCTGTCAGAACCTTAAATTT--GTCTGAATGTTAAGTTAAGCTCAATT 1882
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1849 TCTAGTTAAGTTTCTGTCAGAACCTTAAATTTTTGTCTGAATGTTAAGTTAAGCTCAATT 1908
Query 1883 TTGAGTGCTTTGGGTGTTAAATCATT---ATCTTCTTCTATCATTA 1925
|||||||||||||||||| ||||||| |||||| ||||||||||
Sbjct 1909 TTGAGTGCTTTGGGTGTTCAATCATTGTTATCTTCGTCTATCATTA 1954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95330834955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5