BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474039
Length=537
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48940.1 | Symbols: ENODL6, AtENODL6 | early nodulin-like pr... 806 0.0
> AT1G48940.1 | Symbols: ENODL6, AtENODL6 | early nodulin-like
protein 6 | chr1:18105808-18106422 REVERSE LENGTH=534
Length=534
Score = 806 bits (436), Expect = 0.0
Identities = 508/541 (94%), Gaps = 11/541 (2%)
Strand=Plus/Plus
Query 1 ATGGGTGTACAAAAGATTGTTCTCCTTTCGATCTTCGTAATG-TTTAACGTGTTTTCACT 59
||||||| ||||||||||||||| |||||||||||||| ||| ||| |||||||||||||
Sbjct 1 ATGGGTGGACAAAAGATTGTTCTGCTTTCGATCTTCGT-ATGTTTTTACGTGTTTTCACT 59
Query 60 TGTGTCATGTACTGAATTTGAAGCTGGAGGAGAAAATGGTTGGATCATACCACAATCTAG 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 60 TGTGTCATGTACTGAATTTGAAGCTGGAGGAGAAAATGGTTGGATCATTCCACAATCTAG 119
Query 120 TAACCAGAGTGATATTTTTAACCAATGGGCTTCCAAGAACCGGTTTAAAGTTGGCGACAC 179
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TAACCAAAGTGACATCTTTAACCAATGGGCTTCCAAGAACCGGTTTAAAGTTGGCGACAC 179
Query 180 TATCCGTTTCAAGTACAAGAAAGACTCTGTTTTGGTGGTAACAGAAGACGAGTACAAGAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 TATCCGTTTCAAGTACAAGAAAGACTCTGTTTTGGTGGTAACAGAAGACGAATACAAGAA 239
Query 240 ATGCCAGACGACCAAACCGAAA-TTATACTCGAACCACGATGATACGGTTTTCAAATTGG 298
||| ||||||||||||||| || || ||||| ||||||||||||||||||||||||||||
Sbjct 240 ATGTCAGACGACCAAACCGGAACTT-TACTCCAACCACGATGATACGGTTTTCAAATTGG 298
Query 299 ACCGTCCCGGTTTGTTTTATTTCATAAGCGGTGTCTCAGGCCACTGTGAA-AAGGGTCAG 357
||||||||||||||||||||||||| || ||||||||||||||||||||| |||| ||||
Sbjct 299 ACCGTCCCGGTTTGTTTTATTTCATTAGTGGTGTCTCAGGCCACTGTGAACAAGG-TCAG 357
Query 358 AAAATGATTATTAAAGTCATGGAGGTCGAATCTCCGCCGCAATCTCCTCCACCTTCTTCG 417
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||
Sbjct 358 AAAATGATTATTAAAGTCATGGAGGTGGAATCTACGCCGCAATCTCCTCCACCTTCCTCG 417
Query 418 TCTCTAGCCGCTTCTTCAACTCACAAGAAAAACCACGCCGTGAGGAAAACGAGTCGGTTC 477
|||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCTCTACCCGCTTC---AGCTCACAAGAAAAACCACGCCGTGAGGAAAACGAGTCGGTTC 474
Query 478 TTAGGTGCCGGTTTAATTACAATTTCAATTCTGGCT-TTGACGGTTTTTAGTGTTGTGTA 536
||||||||||||||| |||||||||| ||||||| | || |||||||||||| |||||||
Sbjct 475 TTAGGTGCCGGTTTAGTTACAATTTCGATTCTGGTTATT-ACGGTTTTTAGTCTTGTGTA 533
Query 537 G 537
|
Sbjct 534 G 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25719883264
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5