BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474040
Length=1991
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48950.1 | Symbols: | C3HC zinc finger-like | chr1:1810689... 2990 0.0
> AT1G48950.1 | Symbols: | C3HC zinc finger-like | chr1:18106897-18110237
FORWARD LENGTH=2080
Length=2080
Score = 2990 bits (1619), Expect = 0.0
Identities = 1892/2019 (94%), Gaps = 38/2019 (2%)
Strand=Plus/Plus
Query 1 TCGTTTTTGTGTTATTCCGTCACTGCCATCTAAAC-CCACTCCTTCACCCACCTGAG-C- 57
||||||| ||||| ||||||||| ||||||||||| ||||||||| |||||||| |
Sbjct 1 TCGTTTTCGTGTTGTTCCGTCACCGCCATCTAAACACCACTCCTT----CACCTGAGCCG 56
Query 58 C-GCGACGAA----GAA--GAATCTGTAAGATTAGGG----T----TTATAGGAAGACGA 102
| |||| ||| ||| |||||| | ||||||||| | |||||||| |||||
Sbjct 57 CGGCGAAGAAGGTGGAAGCGAATCTATTAGATTAGGGTTTATACGATTATAGGAGGACGA 116
Query 103 AATTAGTACGACGAGCAAGAGGAAGCTGCG-TTTTTCTGGAAGATTTAACAATGGCACAA 161
||| || | ||||||| ||||||||||||| ||||||||||||| | |||||||||||||
Sbjct 117 AATCAGAAAGACGAGCTAGAGGAAGCTGCGATTTTTCTGGAAGA-TAAACAATGGCACAA 175
Query 162 GATTCAGAGAAGAGATTCCACCAAATCATGGACAAACTCTTTACCCCATCGAAATCTCAG 221
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 176 GATTCAGAGAAGAGATTCCACCAAATCATGGATAAACTCTTTACCCCATCGAAATCTCAG 235
Query 222 CTTCCTTCGTCCT---CCAGTTCTTCTGTAGAGCAACAATCAAGAGGCAAGAAGCGTCCA 278
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 236 CTTCCTTCTTCCTCCACCAGTTCTTCTGTAGAGCAACAATCAAGAGGCAAGAAGCGTCAA 295
Query 279 AATCCTTCATCTGCGTTAGCATTGGTTGAGCCTAAGACGGTATTAGCTACCATTGATAGG 338
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 296 AATCCTTCATCTGCGTTAGCATTGGTTGAGCCAAAGATTGTATTAGCTACCATTGATAGG 355
Query 339 TCTTCAGCTTTGAAAGTTCCTGCTGGAACATCGCCGTCTGGTCTTTGTAGGCCGTGGGAT 398
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 356 TCTTCAGCTTTGAAGGTTCCTGCTGGAACATCGCCTTCTGGTCTTTGCAGGCCGTGGGAT 415
Query 399 AGAGGAGATCTTATGAGGAGGCTAGCTACTTTTAAGTCCATGACTTGGTTTGCCAAGCCC 458
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 416 AGAGGAGATCTTATGAGGAGGCTTGCTACTTTCAAGTCCATGACTTGGTTTGCCAAGCCA 475
Query 459 CAGATTATTAGTGCTGTAAATTGTGCGAGGAGAGGGTGGGTGAATGATGACGCAGATTCT 518
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CAGGTTATTAGTGCTGTAAATTGTGCGAGGAGAGGGTGGGTGAATGATGACGCAGATTCT 535
Query 519 ATAGCTTGTGAATCTTGTGGGGCTCATCTTTATTTTTCAGCCCCATCTTCTTGGTCTAAG 578
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 536 ATAGCTTGTGAATCTTGTGGAGCTCATCTTTACTTTTCAGCCCCATCTTCTTGGTCTAAG 595
Query 579 CAACAAGTGGAGAAAGCGGCATCAGTCTTCAGCTTAAAGTTGGATAGTGGACACAAATTA 638
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 596 CAACAAGTGGAAAAAGCGGCATCAGTCTTCAGCTTAAAGTTAGAGAGTGGACACAAATTA 655
Query 639 CTTTGTCCATGGATAGAGAATTCATGCGAAGAAACGCTTTCTGAGTTTCC-TTCAATGAC 697
|||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| |
Sbjct 656 CTTTGTCCATGGATAGAGAATTCATGTGAAGAAACGCTTTCTGAGTTTCCGTT-AATGGC 714
Query 698 ACCGCAGGATTTGGTAGATAGACACGAAGAACGGTCAGATGCTTTACTTCAACTTTTGGC 757
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 715 ACCGCAGGATTTAGTCGATAGACACGAAGAACGGTCAGAAGCTTTACTTCAACTTTTGGC 774
Query 758 CCTTCCTGTTATTTCACCATCAGCCATTGAGTACATGAGGAGCTCAGATCTGGAGGAATT 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CCTTCCTGTTATTTCACCATCAGCCATTGAGTACATGAGGAGCTCAGATCTGGAGGAATT 834
Query 818 TCTCAAACGACCTATTGCATCTGCCA-GTAGTGTCACCGCAGCAGAAAGCTCTCAAACAG 876
||||||||||||||||||| |||| | |||||| ||| ||||||||||| |||||||| |
Sbjct 835 TCTCAAACGACCTATTGCACCTGC-ATGTAGTGACACAGCAGCAGAAAGTTCTCAAACTG 893
Query 877 AATCCCTTATCAATCATGTTGGAGCGAGCCCTGCTCAACTTTTCTACCAGGCACAAAAAC 936
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 894 AATCCCTTACCAATCATGTTGGAGCGAGCCCGGCTCAACTTTTCTACCAGGCACAAAAAC 953
Query 937 TTATCAGTTTATGTGGCTGGGAACCACGGGCACTTCCTTATATTGTGGATTGCAAAGATA 996
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 954 TTATCAGTTTATGTGGCTGGGAACCGCGGGCACTTCCTTATATTGTGGACTGCAAAGATA 1013
Query 997 AATCAAGTGAGACCGCTAGGGGTACAGATACTATTGATTTACTGCCAGAAACTGCTACCC 1056
||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1014 AATTGAGTGAGACGGCTAGGGGTACAGAGACTATTGATTTACTGCCAGAAACTGCTACCC 1073
Query 1057 GCGAGCTTCTAAGCATCTCTGATTCAACCCCAATTCCAGATGG-AGTATCAGGGAATAAT 1115
|||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||||||
Sbjct 1074 GCGAGCTTCTAAGCATCTCTGAATCAACCCCAATTCCAAATGGCA-TATCAGGGAATAAT 1132
Query 1116 GAGAACCCAACACTTCCTGACACATTAAACTCTGATCCGAGTTCTGTAGTACTTGACTGC 1175
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1133 GAGAACCCAACACTTCCTGACACATTAAACTCTGATCCTAGTTCTGTTGTACTGGACTGC 1192
Query 1176 AAGCTCTGTGGGGCCTGTGTTGGTCTATGGGTTTTCTCAACTGTTCCGAGACCACTAGAA 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 AAGCTCTGTGGGGCCTGTGTTGGTCTATGGGTTTTCTCAACTGTTCCGAGACCACTAGAA 1252
Query 1236 TTGTGTAGAGTCACTGGTGATACCGAAATTAGTACAGAGAAACATCCCAGGGGTGGTACT 1295
||||||||||||||||||||||||||||| | || |||||||||||||| |||||||||
Sbjct 1253 TTGTGTAGAGTCACTGGTGATACCGAAATCAATATAGAGAAACATCCCAAGGGTGGTACC 1312
Query 1296 CTTCAA-AGCCAACCTTCAAGCTTGAAATTTACCATAGCAGGAGGACCCCCAGCAACAAA 1354
|||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1313 CTTCAACATC-AACCTTCAAGCTTGAAGTTTACCATAGCAGGAGGACCCCCAGCAACAAA 1371
Query 1355 GCAAAACTTCAAAGCAACAATATCGCTGCCTGTTATCGGGAGGAACTTGAGGTCAAGATT 1414
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1372 GCAAAACTTCAAAGCAACAATATCGCTGCCTATTATCGGGAGGAACCTGAGGTCAAGATT 1431
Query 1415 TGCTTCTTACTCCAGAGATCATGATCATGGGGATGTCAGTTCTATTCAGGATCAACAGAG 1474
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1432 TGCTTCGTACTCTAGAGATCATGATCACGGGGATGTCAGTTCTATTCAGGATCAACAGAG 1491
Query 1475 TAAAACTGCAGAGAACAACGGTGATGTTACACAAAATAGTGATCAAGTGGTGAATGATAT 1534
|| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1492 TAGAACTGCAGAGAACAACGGTGATGTTACACAAAATAGCAATCAAGTGATGAATGATAT 1551
Query 1535 AGGAGAGAAGGCTGATGGAGGAAGCAACTCAACTGATGTAGAGAGTGATATTGCACTACA 1594
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1552 AGGAGAGAAGGCTGATGGTGGAAGAAACTCAACTGATGTAGAGAGTGATATTGCACTACA 1611
Query 1595 CAACAAAGACAAACAAATGATGGTAGTAAGATCAAATCTTCCTGATAACAGCAAACCAAA 1654
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
Sbjct 1612 AAACAAAGACAAACAAATGATGGTAGTAAGATCAAATCTTCCTGAAAACAACAAACCTAG 1671
Query 1655 GGATTCAACTGCAGGAAAATAAGTGACATCAAACAAACAGATGGAATTTGATCCAATCAA 1714
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1672 GGATTCAACTGCAGAAAAATCAGCGACATCAAACAAACAGATGGAATTTGATCCAATCAA 1731
Query 1715 GCAACATAGGCATTTCTGTCCTTGGATCTGGTCAACGGGTAGAAGAGGTCCTGGATGGCG 1774
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1732 GCAACATAGGCATTTCTGTCCTTGGATCTGGTCAACGGGTAGAAGAGGCCCTGGATGGCG 1791
Query 1775 ACAGACTCTGTCTGCATTACAACGCCATAAAGGATCTTGTCAGACTCCACCGA-CACCCT 1833
|||||||||||||||||||||||| |||||||||||||||||||||||||| | || |||
Sbjct 1792 ACAGACTCTGTCTGCATTACAACGGCATAAAGGATCTTGTCAGACTCCACC-ATCATCCT 1850
Query 1834 CTTCCCTGTTCAAGGTAGATGATCCGTTAACATCTGTTCGGAACCTATTTAAGTCGCCAT 1893
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1851 CTTCCCTCTTCAAGGTAGATGATCCGTTAACATCTGTTCGAAACCTATTTAAGTCGCCAT 1910
Query 1894 CCCCCAAAAAACGAAAACTGAACGGAGGATCTTCAAGCTGAGACACCAGACGATTTTGTT 1953
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 CCCCGAAAAAACGAAAGCTGAACGGAGGATCTTCAAGCTGAGACACCAGACGATTTTGTC 1970
Query 1954 CCTGAAAAAA-CTTGAGCCCTCTTGATCTACACTGTATC 1991
|||||||||| ||||| |||||||| |||||||||||||
Sbjct 1971 CCTGAAAAAAACTTGAACCCTCTTGGTCTACACTGTATC 2009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98644070925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5