BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474041
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48960.1 | Symbols: | Adenine nucleotide alpha hydrolases-l... 1327 0.0
> AT1G48960.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr1:18112458-18113733 FORWARD LENGTH=937
Length=937
Score = 1327 bits (718), Expect = 0.0
Identities = 819/867 (94%), Gaps = 9/867 (1%)
Strand=Plus/Plus
Query 1 GAGAGAGAGTCACAAGAATTACGACACTAAACCTAAACCCAATTCTCgagagaaaagaga 60
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 16 GAGAGTGAGTCACAAGAATTACGACACTAAACCTAAACCCAATTCTCGAGA-AAAAGA-A 73
Query 61 gagaaagaaagagagaaTATATAAATGGGAGATGTACGGAGGATTGTGGTGGTCGTCGAA 120
|| |||||||||||||| |||||||| ||||||||||||||||||||||||||| |||
Sbjct 74 -AG--AGAAAGAGAGAATAAATAAATGGAAGATGTACGGAGGATTGTGGTGGTCGTAGAA 130
Query 121 GATAAACAAGCGGCGAGGACGGCGTTACAATGGGCACTTCATAACCAT-TTCCGTCAAGG 179
||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 131 GATAAACAAGCGGCGAGGACGGCGTTACAATGGGCACTTCACAACC-TCCTCCGTCAAGG 189
Query 180 TGACGTCATAGTCCTTCTCCACGTGTACTCTCCACCGCCGCGTAAGAAGAAATCCACGGC 239
|||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 190 TGACGTCATAGTACTCCTCCACGTGTACTCTCCTCCACCGCGTAAGAAGAAATCCACGGC 249
Query 240 GGCGCGTCTCCTCCGCCGTCACGGATACAATCTTGCTCTCTCTTTCCGTGAAATCTGTGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 250 GGCGCGTCTCCTCCGCCGTCACGGATACAATCTTGCTCTCTCTTTCCGTGAAATCTGCGA 309
Query 300 CGCTTTCTTCAACACGAATACTGAGATCATTGTAAGAGAAGGAGATGATGATGGAAGAAT 359
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 310 CTCTTTCTTCAACACGAATACTGAGATCATTGTGAGAGAAGGAGATGATGATGGAAGAAT 369
Query 360 GATTGCTCAAGTTGTGAAAGAGATTGGTGCTTCGATGCTCCTCGTTGGTCTCCATCAGAA 419
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 370 GATTGCTCAAGTTGTCAAAGAGATTGGTGCTTCGATGCTTCTCGTTGGTCTCCATCAGAA 429
Query 420 CAGCTTTCTTTACAGATGGGCATTGAGTGGGATCGATGTAGCGAGAAATTTCAATTGTAA 479
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 430 CAGCTTTCTTTACAGATGGGCAATAAGTGGGATCGATGTAGCGAGAAATTTCAATTGCAA 489
Query 480 AGTGATGGCTATAAAGCAGCCTTCACCGGAACTTTCGCATCCGGTGAAGGTTAAAGGACA 539
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 490 AGTGATGGCTATAAAGCAGCCTTCACCGGAACTTTCGCCTCCGGTGAAGGTTAAGGGACA 549
Query 540 CAAGACCTCTCAGGCGACGGCGACAGCGACTTCATATAGTTTAACTAATTTTGACTTCTC 599
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||
Sbjct 550 CAAGACCTCTAAGGCGACGGCGACAGCGACTTCAGATTGTTTAACTAATTTTGACTTTTC 609
Query 600 CCAAATTGAAATTTCTGGATTACAGGTTCCTGAGATTCCGACACCACCTAAAGTGCCATA 659
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 610 ACAAATTGAAATTTCTGGATTACAGGTTCCTGAGATTCCGACACCAACTAAAGTGCCATA 669
Query 660 CAGATTATGTCCGAGTCCTCATGCCATACTCTGGAGAACAAGACCCCGGAGGAGATCCAA 719
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 670 CAGATTATGTCCGAGTCCTCATGCCATACTATGGAGAACAAGGCCCCGGAGGAGATCCAA 729
Query 720 AGACCAATACGGTGTCGTTTCCTAGTCTATGATTTTTGTTTTTGAGACAAACC-ACCAAA 778
||||||||||||||||| ||| ||||||| ||| |||| |||||||||||||| ||||||
Sbjct 730 AGACCAATACGGTGTCGGTTCATAGTCTACGATATTTGCTTTTGAGACAAACCCACCAAA 789
Query 779 ACTTTACCATCAAATAAACCAATTATACTCGATACaaaaaaaaaaaaTCATTCCAATCAC 838
|||||||| |||||||||| |||| |||||||||| ||||| ||| |||||||||||||
Sbjct 790 ACTTTACCTTCAAATAAACAAATTTTACTCGATACTAAAAAGAAAG-TCATTCCAATCAC 848
Query 839 ATTATTCTTAAACAATGAACAGTTTTT 865
|||||||||||||||||||||||||||
Sbjct 849 ATTATTCTTAAACAATGAACAGTTTTT 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42196683480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5