BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474043
Length=650
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48990.1 | Symbols: | Oleosin family protein | chr1:1812143... 789 0.0
> AT1G48990.1 | Symbols: | Oleosin family protein | chr1:18121434-18122155
FORWARD LENGTH=722
Length=722
Score = 789 bits (427), Expect = 0.0
Identities = 544/597 (91%), Gaps = 21/597 (4%)
Strand=Plus/Plus
Query 1 ATCTCTCTATCTCCTCGCCGAGAATGGCTGACCGAACCAACCCTAGCAGCCACACACAAC 60
|||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||| ||||
Sbjct 14 ATCTCTCTCTCTCCTCGCCGAAAATGGCTGATCGAACAAACCCTAGCAGCCACACCCAAC 73
Query 61 ACAGACCCATCTACAATTCAACCACCTTCCCACGCAGCAACAACACCACCACCAACCACC 120
| ||||||||||| || ||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 74 AGAGACCCATCTATAACTCAACCACCGTCCCTCGCAG---CAACACCACCACCAACCACC 130
Query 121 CCCTCTCATCTCTTCTCCGTCAGCTACTACAATCGCAGTCTCCTAATCACTCCGGTCAGC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 131 CCCTCTCATCTCTTCTCCGTCAGCTACTACAATCGCAGTCTCCTAATCACTCCGGTCAAC 190
Query 181 TCTTCGGCTTCCTCGCATTTTTCATCTCTGGTGGAATCCTCCTTTTACTCACCGGAATCA 240
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 191 TCTTCGGCTTCCTCGCATTCTTCATCTCCGGTGGAATACTCCTTTTACTCACCGGAATCA 250
Query 241 CCGTCACCGCTT-CTGTCCTCGGATTCATTGCTTTTCTCCCACTCATCATCAT-TACAAG 298
| |||||||||| | ||||| ||||||||||||||||||||||||||||| || | ||||
Sbjct 251 CTGTCACCGCTTTC-GTCCTTGGATTCATTGCTTTTCTCCCACTCATCATTATCT-CAAG 308
Query 299 CCCTATTTGGATCCCTTTGTTCCTCGTCGTTACCGGATTCTTGTCCGTCGCCGGA-TCCC 357
|||||||||||||||||||||||| |||| ||||||||||||||| |||| ||| ||
Sbjct 309 CCCTATTTGGATCCCTTTGTTCCTTATCGTAACCGGATTCTTGTCCCTCGCTGGACTCA- 367
Query 358 TCTTCGCTACGGGGGCTGTTGTGTTGTGGTTGTATCGATATTTTAAAGGCATGCATCCAC 417
|||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 368 TCTTGGCTACAGGGGCTGTTGTGTCGTGGTTGTATCGATATTTTAAAGGCATGCATCCA- 426
Query 418 TTG-GGTCGGATCAGGTGGATTATGCTCGGAGTCGAATCCATGACACGGCGGCCCATGTA 476
|| ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 427 TTAAGGTCGGATCAGGTTGATTATGCTCGGAGTCGAATTCATGACACGGCGGCTCATGTC 486
Query 477 AAAGATTATGCTGGTGGGTACTTCCATGGTACGCTGAAAGATGCAGCACCTGGTGCATGA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 AAAGATTATGCTGGTGGGTACTTCCATGGTACGCTGAAAGATGCAGCACCTGGTGCATGA 546
Query 537 A-GGTT-A-----A-CCGATATGGTTTGGTCTCATGTAGAAATTACACG-ttttttt 584
| |||| | | ||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 547 AAGGTTGACCCTTAACCG-TATAGTTTGGTCTCATGTAGAAATTACACGGTTTTTTT 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31396341875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5