BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474044
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 822 0.0
> AT1G49000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G18560.1);
Has 105 Blast hits to 105 proteins in 13 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:18123459-18124165 REVERSE LENGTH=707
Length=707
Score = 822 bits (445), Expect = 0.0
Identities = 558/612 (91%), Gaps = 9/612 (1%)
Strand=Plus/Plus
Query 1 CtttttttACTTCTCATTCTTCGTATCCGGCGAAGATATGGACCGTTCAACGCCGGAACA 60
|||||| |||||||||||||| | |||||||||| ||||||||| ||||||||||||||
Sbjct 100 CTTTTTCAACTTCTCATTCTTCATTTCCGGCGAAGTTATGGACCGATCAACGCCGGAACA 159
Query 61 TAACTCACCCT-CCTCCCACAAACGTCTAAGCGTGAGCTTTCTCGTCTCTATGATGGTTC 119
||||||| || |||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 160 TAACTCA-TCTCCCTCACACAAGCGTCTAAGCGTGAGCTTTCTCGTCTCAATGATGGTTC 218
Query 120 TCTGCGCCAGGCATGCGAATCGGCTCTCAAAGAAACTAAAGCTAAAGTCTAAGAAGCGAA 179
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 219 TCTGCGCCAGGCATGCGAATCGGCTCTCGAAGAAACTAAAGCTGAAGTCAAAGAAGCGAA 278
Query 180 CTCACAGCGGCGGAGAGGGTGGAGGAGAAAGATTCCGATGGAATATGATAAGCTCGTCTA 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 279 CTTGCAGCGGCGGAGAGGGTGGAGGAGAAAGATTCCGATGGAATATGATAAGCTCGTCGA 338
Query 240 TGAGTTCTCCTAGGCCGAAAGAGTTGTTCACGGCTTTGAA-CAACAAGGCGATGACGATG 298
||||||||||| |||| ||||||||||||||| |||| || ||||||||||||||| |||
Sbjct 339 TGAGTTCTCCTCGGCCAAAAGAGTTGTTCACGACTTT-AAGCAACAAGGCGATGACCATG 397
Query 299 GTCCGCCGGGAAAAAACGGCCG-AGAAAAAAGCGGTGGCGGTGGAGGAGGAGCACGGCCT 357
||||||||| ||||| | |||| || ||||||| || ||||||||||||| |||||
Sbjct 398 GTCCGCCGG-AAAAACCCGCCGGAGGAAAAAGCAACCGCCATGGAGGAGGAGCATGGCCT 456
Query 358 TTGGCAGAAAGAGATATTGATGGGAGGCAAATGTGAGCCGTTGGATTTCTCGGGTGTGAT 417
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 TTGGCAGAGAGAGATATTGATGGGAGGCAAATGTGAGCCGTTGGATTTCTCGGGTGTGAT 516
Query 418 TTATTACGACTGC-AACGGACGGCTGCTAAATGAGGTGCCACCAAGATCGCCACGTGGCA 476
|||||||||| | ||||||||||| |||| || |||||||| ||||| ||||||||||
Sbjct 517 ATATTACGACT-CTAACGGACGGCTATTAAACGAAGTGCCACCGAGATCACCACGTGGCA 575
Query 477 CTCTGTTACCTAGTTACCCGACCCGTTCTTAAGTCGGGTCGCAGTTAAACCTAATGG-AA 535
||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 576 CTCCATTACCCAGTTACCCGACCCGTTCTTAAGTCGGGTCGCAGTTAAACTTAATGGGAA 635
Query 536 CGAATGATTATTAAGCAACTTCATTAGATGATTGAAACGTCGATTACGCAGCAAAACAAA 595
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 636 CGAATGATTATTAAGCAACTTCATTAGATGATTGAAACGTCGATTAGGCAGCAAAACAAA 695
Query 596 AATATTATGTAT 607
| || |||||||
Sbjct 696 ATTACTATGTAT 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29236273554
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5