BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474045

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49005.1 | Symbols: CLE11 | CLAVATA3/ESR-RELATED 11 | chr1:1...   429    7e-120


> AT1G49005.1 | Symbols: CLE11 | CLAVATA3/ESR-RELATED 11 | chr1:18128686-18131522 
REVERSE LENGTH=582
Length=582

 Score =  429 bits (232),  Expect = 7e-120
 Identities = 282/305 (92%), Gaps = 7/305 (2%)
 Strand=Plus/Plus

Query  1    ATGAAGAAACAACCTAAGCCGTGTAGTTTCCTCTTCCACATCGCTCTACTGATCTCTGCG  60
            |||| ||||||||||||||||||||||||||||||||||||| ||||||   ||||||||
Sbjct  283  ATGACGAAACAACCTAAGCCGTGTAGTTTCCTCTTCCACATCTCTCTAC---TCTCTGCG  339

Query  61   CTGTTCGTATTT-CTTCTTATTTCTTTTGCTTTTACGACTTCTTACAAGCACAAATCCGG  119
             |||| || ||| ||||| |||||||||||||||||||||||||||||||  ||||||||
Sbjct  340  TTGTTTGT-TTTCCTTCTCATTTCTTTTGCTTTTACGACTTCTTACAAGCTTAAATCCGG  398

Query  120  CATTAATAGTTTAGGCCATAAGAGAATTCTAGCAAGTAATTTTGATTTTACTCCGTTTCT  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  399  CATTAATAGTTTAGGCCATAAGAGAATTCTAGCAAGTAATTTTGATTTTACTCCGTTTCT  458

Query  180  CAAGAGCAAAGATCGCACTCAATGGCAACGTCAAAGTCAAAGCCTGACCGGAAAAGAAAC  239
            |||||  ||||||||||||||| ||||||||||||||| ||||||||| | |||||||| 
Sbjct  459  CAAGAATAAAGATCGCACTCAACGGCAACGTCAAAGTCCAAGCCTGACTGTAAAAGAAAA  518

Query  240  CG-TTTCATGGTACAATGATGAGGAACGGTTGGTACCTAGCGGTCCGAACCCTTTGCATC  298
            || |||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct  519  CGGTTTC-TGGTACAATGATGAGGAACGGGTGGTACCTAGCGGTCCAAACCCTTTGCATC  577

Query  299  ACTAG  303
            |||||
Sbjct  578  ACTAG  582



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14024701971


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5