BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474050
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49050.1 | Symbols: | Eukaryotic aspartyl protease family p... 2857 0.0
> AT1G49050.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:18150538-18153361 FORWARD LENGTH=2027
Length=2027
Score = 2857 bits (1547), Expect = 0.0
Identities = 1771/1874 (95%), Gaps = 35/1874 (2%)
Strand=Plus/Plus
Query 1 TCTATCTCCGATCAAAACCAGCCCAATTCGATCGGAGAAATCTA-ACAATGGAACAAGAT 59
||| |||||||||||||||||||||||||||||||||| ||| | | |||||||| ||||
Sbjct 54 TCTCTCTCCGATCAAAACCAGCCCAATTCGATCGGAGACATC-ACAGAATGGAACCAGAT 112
Query 60 CTTCATG---AG------CAACAACGACTCCACAGCGTAGTCATAATCACTCTTCCACCA 110
||||||| || ||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 113 CTTCATGACCAGCAACAACAACAACGAGTCCACAGCGTAGTCATAATCACTCTCCCACCA 172
Query 111 TCTGATGATCCTTCACAAGGCAAAACAATCTCTGCTTTCACTCTCACTGACCACGATTAC 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TCTGATGATCCTTCACAAGGCAAAACAATCTCTGCTTTCACTCTCACTGACCACGATTAC 232
Query 171 CCACTAC-AAATCCCACCCGAGGACAACCCAAACCCGAGTTTTCAACCCGACCCACTTCA 229
||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 233 CCACT-CGAAATCCCACCCGAGGATAACCCAAACCCGAGTTTTCAACCCGACCCACTTCA 291
Query 230 CCAAAACCAACAATCTCGACGCTTGTTCTCGGATCTCTCAATGGGTTCGCCGAGATTCGT 289
|| ||||||||||||||| | |||||||||||||||||||||| |||||||||||| ||
Sbjct 292 CCGAAACCAACAATCTCGCCTCTTGTTCTCGGATCTCTCAATGAATTCGCCGAGATTAGT 351
Query 290 TCTGGGTCTTGTCGGATTCTCTCTTCTCGCGGTTGCTTTCTACGCCTCTGTTTTTCCTAA 349
|||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 352 TCTGGGTCTTCTCGGAATCTCGCTTCTCGCGGTTGCTTTCTACGCCTCTGTTTTTCCCAA 411
Query 350 CTCTGTTCAAATGTTTAGGG-TT-T-CTGATGAGAGGAACCGT---GATGACGATAGTTC 403
|||||||||||||||||||| || | ||||||||||||||||| || ||||||| ||
Sbjct 412 CTCTGTTCAAATGTTTAGGGTTTCTCCTGATGAGAGGAACCGTGACGACGACGATA-ATC 470
Query 404 -CCGTGAAACGACGTCGTTTGTTTTCCCTGTTTATCACAAATTGAGAGCTCGAGAGTTCC 462
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 471 TCCGTGAAACGGCGTCGTTTGTTTTCCCTGTATATCACAAATTGAGAGCTCGAGAGTTCC 530
Query 463 ATGAACGGATCTTAGCGGAAGATTTAGGTTTAGAGAATGGAAACTTTGTGGAATCAATGG 522
| || |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 531 ACGAGCGGATCTTAGAGGAAGATTTAGGTTTAGAGAATGAAAACTTTGTGGAATCAATGG 590
Query 523 ATTTAGAGTTGGTCAACCCTGTAAAAGTCAACGATGTTTTATCTACAAGTGCTGGTTCTA 582
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 591 ATTTAGAGCTGGTCAACCCTGTAAAAGTCAACGATGTTTTATCTACAAGTGCCGGTTCTA 650
Query 583 TTGACTCCTCCACTACGATTTTTCCCGTCGGTGGTAATGTGTATCCTGATGGGCTGTATT 642
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 651 TTGACTCCTCCACTACGATTTTTCCCGTCGGTGGTAATGTGTATCCAGATGGGCTGTATT 710
Query 643 ATACACGCATTCTTGTTGGAAAGCCTGAAGATGGACAATACTATCATCTTGATATTGATA 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 ATACACGCATTCTTGTTGGAAAGCCTGAAGATGGACAATACTATCATCTTGATATTGATA 770
Query 703 CTGGAAGTGACTTGACTTGGATCCAATGTGATGCGCCTTGTACTAGTTGTGCTAAGGGAG 762
| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 771 CGGGAAGTGAATTGACTTGGATCCAATGTGATGCTCCTTGTACTAGTTGTGCTAAGGGAG 830
Query 763 CAAATCAACTATATAAGCCTAGAAAAGATAACTTAGTGAGATCTTCAGAGCCCTTTTGTG 822
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 831 CAAATCAACTATATAAGCCTAGAAAAGATAACTTAGTGAGATCTTCAGAGGCCTTTTGTG 890
Query 823 TAGAAGTCCAAAGGAATCAACTGACAGAACATTGTGAGAGTTGTCATCAATGTGATTATG 882
||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |
Sbjct 891 TAGAAGTCCAAAGGAATCAACTGACAGAACATTGTGAAAATTGTCATCAATGTGACTACG 950
Query 883 AGATTGAATATGCTGATCATAGCTACTCCATGGGAGTTCTCACCAAAGATAAGTTTCATC 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 AGATTGAATATGCTGATCATAGCTACTCCATGGGAGTTCTCACCAAAGATAAGTTTCATC 1010
Query 943 TCAAACTCCATAACGGATCATTAGCCGAGTCAGATATAGTTTTCGGGTGCGGATATGATC 1002
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1011 TCAAACTCCATAACGGATCACTAGCCGAGTCAGATATAGTTTTCGGGTGCGGGTATGATC 1070
Query 1003 AGCAAGGACTACTGTTGAACACTCTGCTAAAGACAGACGGGATTCTCGGTCTAAGCAGAG 1062
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 AGCAAGGACTACTGTTGAATACTCTGCTAAAGACAGACGGGATTCTCGGTCTAAGCAGAG 1130
Query 1063 CTAAAATTAGCTTACCTTCTCAACTTGCAAGCCGAGGTATTATCAGCAATGTGGTTGGCC 1122
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1131 CTAAAATTAGCTTACCTTCTCAACTTGCAAGCAGAGGTATTATCAGCAATGTGGTTGGCC 1190
Query 1123 ATTGCATAGCCTCTGATTTAAACGGTGAAGGATATATCTTCATGGGAAGTGATTTGGTTC 1182
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 ATTGCCTTGCCTCTGATTTAAACGGTGAAGGATATATCTTCATGGGAAGTGATTTGGTTC 1250
Query 1183 CATCACACGGAATGACATGGGTTCCTATGCTTCACCATCCCCACTTGGAAGTTTATCAGA 1242
||||||||||||||||||||||||||||||||||| || ||| |||||| | ||||||||
Sbjct 1251 CATCACACGGAATGACATGGGTTCCTATGCTTCACGATTCCCGCTTGGATGCTTATCAGA 1310
Query 1243 TGCAAGTTACAAAGATGAGCTATGGGAATGCTATGCTTAGCTTAGATGGCGAAAACGGAA 1302
|||||||||||||||||||||| ||| | | |||||||||||||||||| ||||||||||
Sbjct 1311 TGCAAGTTACAAAGATGAGCTACGGGCAGGGTATGCTTAGCTTAGATGGGGAAAACGGAA 1370
Query 1303 GAGTAGGGAAAGTCTTATTTGACACAGGAAGTTCCTATACATACTTCCCTAACCAGGCTT 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GAGTAGGGAAAGTCTTATTTGACACAGGAAGTTCCTATACATACTTCCCTAACCAGGCTT 1430
Query 1363 ACTCTCAATTGGTCACATCACTTCAAGAAGTTTCTGATTTAGAATTAACACGCGATGATT 1422
|||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1431 ACTCCCAATTGGTCACATCACTTCAAGAAGTTTCTGGTTTAGAACTAACACGCGATGATT 1490
Query 1423 CAGACGAAACACTGCCTATCTGCTGGCGAGCTAAAACTAACTCCCCAATTAGTTCCTTGT 1482
||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct 1491 CAGACGAAACACTGCCTATCTGCTGGCGAGCCAAAACTAACTTCCCGTTTAGTTCCTTGT 1550
Query 1483 CGGATGTTAAGAAGTTCTTCAGACCAATAACTCTGCAAATAGGGAGCAAATGGTTGATCA 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 CGGATGTTAAGAAGTTCTTCAGACCAATAACTCTGCAAATAGGGAGCAAATGGTTGATCA 1610
Query 1543 TATCGAA-AAAACTTTTGATTCAACCCGAGGATTACTTGATCATCAGCAACAAAGGAAAT 1601
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 TATC-AAGAAAACTTTTGATTCAACCCGAGGATTACTTGATCATCAGCAACAAAGGAAAT 1669
Query 1602 GTGTGTCTTGGGATATTAGATGGAAGCAGTGTTCATGATGGTTCCACCATTATTCTTGGA 1661
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1670 GTCTGTCTTGGGATATTAGATGGAAGCAGTGTTCATGATGGTTCCACTATTATTCTTGGA 1729
Query 1662 GATATATCGATGCGTGGACACTTGATCGTGTACGACAACGTGAAACAGAGAATCGGATGG 1721
||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1730 GATATCTCGATGCGTGGACACTTGATCGTGTACGACAATGTGAAACGGAGAATCGGATGG 1789
Query 1722 ATGAAATCAGATTGCGTTCGGCC-CAGTGAGTTTGATCACAATGTACCTTTCTTTCAAGG 1780
||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 1790 ATGAAATCAGATTGCGTCCGGCCTC-GTGAGATTGATCACAATGTACCTTTCTTTCAAGG 1848
Query 1781 CTGAAGGATCCATGATTCTTACATA----A---GTGTATAA--A-CCTGACACATACACG 1830
|||||||| |||| ||||||||||| | |||||||| | |||||||||||||||
Sbjct 1849 CTGAAGGAGCCATAATTCTTACATATGTGATATGTGTATAATTAACCTGACACATACACG 1908
Query 1831 CTTGTATAATAGTA 1844
||||||||||||||
Sbjct 1909 CTTGTATAATAGTA 1922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91264590810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5