BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474052
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49110.1 | Symbols: | unknown protein; Has 5 Blast hits to ... 832 0.0
> AT1G49110.1 | Symbols: | unknown protein; Has 5 Blast hits to
5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:18171595-18172450 FORWARD LENGTH=856
Length=856
Score = 832 bits (450), Expect = 0.0
Identities = 573/631 (91%), Gaps = 13/631 (2%)
Strand=Plus/Plus
Query 4 TACGCGATAGCGTGTTAGCCAAGGCAAACTCATTAGGGATTTGTCCTCCAAGTCACGAAA 63
|||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |
Sbjct 27 TACGCGATAGCGTGTTAGCCAAGGCAAACTCACTAGGGATTTGTCCTCTAAGCCACGAGA 86
Query 64 TGAATCTTCGTCACATTTACGAAGTTTGTAAATGGATGAAAACCGAAGCCGGTATTGAAG 123
||||||| ||||| || ||||||| || | ||||||||||||| |||||||||||||||
Sbjct 87 TGAATCTCCGTCAAATCTACGAAG-TT-T-AATGGATGAAAACAAAAGCCGGTATTGAAG 143
Query 124 CCGTTGTGGAAGTGCAACGCAGCGAGAAGCTAAAGAGGCGAGCCTCAGT-AAAAGGGAGG 182
||||||||||||||||||||||||||||||||||||||||||| || | |||||| |||
Sbjct 144 CCGTTGTGGAAGTGCAACGCAGCGAGAAGCTAAAGAGGCGAGCGACA-TCAAAAGGTAGG 202
Query 183 ACGGTTGCTGAATCGGCTATGATCAGAGCGTTTAACGCTCAGTTTGCTGAGTATAGCTCT 242
|||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 203 ACGGCTGCTGAATCGGCTATGATAAGAGCGTTTAACGCTCAATTTGCTGAGTATAGCTCT 262
Query 243 GAGCTAAAGAAAGCTCGTGCGG-CTTTGGAGAAAGAGAGTGATACTGGTGTTCGTATCCG 301
|| ||||||| ||||||||||| | | | ||||||| |||||||||||||||||| ||||
Sbjct 263 GAACTAAAGATAGCTCGTGCGGTCAT-GAAGAAAGAAAGTGATACTGGTGTTCGTCTCCG 321
Query 302 AGACAAGTACTGGCCAGTTTCTACATTCGATGTAGCCATCAATATTATT-CATGAAGAGT 360
|||||||||||||||||||||| |||||| ||||||||||||| || || || ||||||
Sbjct 322 AGACAAGTACTGGCCAGTTTCTGCATTCGGTGTAGCCATCAATGTT-TTGCACGAAGAGG 380
Query 361 CAGTTCTTGATTTTTGTAGAAAAGAGGAAGTGAAATGTGGTTTATACAAGTATGTTGAAG 420
||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct 381 CAGTTCTTGATTTTTGTAGGAAAGAGGGAGTGAAATGCGGTTTGTACAAGTATGTTGAAG 440
Query 421 GATTGATTGAACGTAAAACGGTGAGTTTTGCTTTACGTGAAGCCGATAATCTTCGGGCTG 480
|| |||||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 441 GACTGATTGAACGCAAGACGGTGAGTTTTGCTTTACGCGAAGCCGATAATCTTCGGGCTG 500
Query 481 TTCTCAAGGAAATGGAAAGTTTTGAAGTTCCAGTTTCGTCCATGGATGGAAATTGTCTTG 540
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 501 TTCTCAAGGAAATGGAAAGGTTTGAAGTTCCGGTTTCGTCTATGGATGGAAATTGTCTTG 560
Query 541 TT-AGTGATAAGAGCAAAGATATTGGATCGGTGCTTGGTCATGGTGGAGAATCATCGTCT 599
|| | | ||||||| |||||||||||||| || |||||||||||||||||| |||| |||
Sbjct 561 TTGA-TAATAAGAGGAAAGATATTGGATCTGTTCTTGGTCATGGTGGAGAAACATCATCT 619
Query 600 AAGAGAGA-GAGACGTCTTACTTGTACGAAG 629
|||| ||| ||||||||||||| ||| ||||
Sbjct 620 AAGA-AGAAGAGACGTCTTACTCGTAAGAAG 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37977015132
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5