BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474053
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49120.1 | Symbols: | Integrase-type DNA-binding superfamil... 1258 0.0
AT4G17500.1 | Symbols: ATERF-1, ERF-1 | ethylene responsive ele... 56.5 5e-07
> AT1G49120.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:18173427-18174416 FORWARD LENGTH=990
Length=990
Score = 1258 bits (681), Expect = 0.0
Identities = 897/995 (90%), Gaps = 40/995 (4%)
Strand=Plus/Plus
Query 1 ATGATCAGTTTCAGAGAAGAGACCATCGATCTCAACTTGATTAAAACAGTTAATATAATC 60
|||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||
Sbjct 1 ATGATCAGTTTCAGAGAAGAGAACATCGATCTCAACTTGATTAAAACAATTAGTGTAATC 60
Query 61 TGTAATGATCCCGACGCTACTGATTCCTCTAGCGACGATGAATCTATCTCCGGCAATAAT 120
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTAATGATCCAGACGCCACCGATTCCTCTAGCGACGATGAATCTATCTCCGGCAATAAT 120
Query 121 CCTCGCCGTCAGATCAAACCAAAGCCACC-AAAGCGTTACGTCTCAAAGATCTGTGTCCC 179
||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 121 CCTCGCCGTCAGATCAAACCAAAACCACCGAAA-CGTTACGTCTCAAAGATCTGTGTCCC 179
Query 180 GACGCTGATCAAAAGGTACGAGAACGTTTCGAATTCTACAGGGAATAAAGTAGCCGGAAA 239
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 GACGCTGATCAAAAGGTATGAGAACGTTTCGAATTCTACAGGGAATAAAGCAGCCGGAAA 239
Query 240 CCGGAAATCGTCGTCGGGTTTCAAAGGCGTACGACGGAGGCCGTGGGGGAAATTTGCGGC 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCGGAAAACGTCGTCGGGTTTCAAAGGCGTACGACGGAGGCCGTGGGGGAAATTTGCGGC 299
Query 300 GGAGATAAGAAATCCGTTTGAGAAGAAGAGAAAGTGGCTTGGAACGTTTCCTACTGAAGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGAGATAAGAAATCCGTTTGAGAAGAAGAGAAAGTGGCTTGGAACGTTTCCTACTGAAGA 359
Query 360 AGAAGCAGCAGAGGCTTATCAGA-GAAGTAAAAGAGAGTTTGATGAACGATTAGGTTTAG 418
|||||||||||| ||||| || | || ||||||||||||||||||||||||| |||||||
Sbjct 360 AGAAGCAGCAGAAGCTTACCAAAAGA-GTAAAAGAGAGTTTGATGAACGATTGGGTTTAG 418
Query 419 TTAAACCGGAAAGAGA--T-GTA-A-----CCAGGCCTTGTGGTGTACGTAAACCTGAAG 469
|||||| ||||| ||| | ||| | ||| ||| || |||||||||||||| ||||
Sbjct 419 TTAAACAGGAAAAAGACCTAGTAGATTTGACCAAGCCGTGCGGTGTACGTAAACCAGAAG 478
Query 470 AGAAGGAAGTTACTGACAAGTCAAAATGCAAAAAGGTAAATAAGAGAATTGTTACTGA-- 527
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 479 AGAAGGAAGTTACTGAGAAGTCGAATTGCAAAAAGGTAAATAAGAGAATTGTTACTGATC 538
Query 528 -GACGCCATTCGGTTGTGGTTATAATGCTGAT---GAAGAAGAGGGAGTGATTGGTAAAA 583
|| |||||| |||||||||||||| |||||| |||||||||||||||||| ||||||
Sbjct 539 AGAAGCCATTTGGTTGTGGTTATAACGCTGATCATGAAGAAGAGGGAGTGATTAGTAAAA 598
Query 584 TGTTGGAAGATCCGTTGATGACATCCTCGATTGCGGATATTTTTCGTGATTCGGTTGTTG 643
||||||||||||||||||||||||| || ||||| ||||||||| ||||||||| |||||
Sbjct 599 TGTTGGAAGATCCGTTGATGACATCGTCAATTGCTGATATTTTTGGTGATTCGGCTGTTG 658
Query 644 AAGCAGATGATATTTGGGTGGATTACAATTCAGTGGAATTTAATTCGATTTTAGATGATC 703
||||| |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 659 AAGCAAATGATATTTGGGTGGATTACAATTCAGTGGAATTTATTTCCATTGTAGATGATT 718
Query 704 TAAAGTTAGATTTTGTGGAGAATATTGATAGTGTAGGCATGGAGAAAACATTCGGATTTA 763
| ||||| ||||||||||||||| ||||| ||||| | |||||||||||| |||||||
Sbjct 719 TCAAGTTTGATTTTGTGGAGAAT---GATAGAGTAGGAAAGGAGAAAACATTTGGATTTA 775
Query 764 AGATTGGGGATAACACTAAGGTTAATCAACACACGAAAATCGTATCGACGATTG----C- 818
||||||||||| ||||||| ||||||||||| | |||||||||||||| | || |
Sbjct 776 AGATTGGGGATCACACTAAAGTTAATCAACATGCCAAAATCGTATCGACCAATGGGGACT 835
Query 819 -A---G---AT-ATTTTC--GAC---GATCCGTTGTTAGATGATTTTAAGTTAGAAGATT 865
| | || |||| | || ||||||||| ||||||||||||||||||||||||
Sbjct 836 TATTCGTCGATGATTTACTTGATTTTGATCCGTTGATAGATGATTTTAAGTTAGAAGATT 895
Query 866 TTCCGATGGATGATTTTGGATTATTAGGAGATCCAGAGGATGATGATTATAGTTGGTTTA 925
|||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 896 TTCCTATGGATGATCTTGGATTATTAGGAGATCCAGAGGATGATGATTTTAGTTGGTTTA 955
Query 926 ATGGTACTACTGATTGGATCGATAAGTGTTTATGA 960
||||||||||||||||||||||||||| |||||||
Sbjct 956 ATGGTACTACTGATTGGATCGATAAGTTTTTATGA 990
> AT4G17500.1 | Symbols: ATERF-1, ERF-1 | ethylene responsive element
binding factor 1 | chr4:9759325-9760340 FORWARD LENGTH=1016
Length=1016
Score = 56.5 bits (30), Expect = 5e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 277 AGGCCGTGGGGGAAATTTGCGGCGGAGATAAGA 309
||||||||||||||||||||||||||||| |||
Sbjct 540 AGGCCGTGGGGGAAATTTGCGGCGGAGATTAGA 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5