BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474056
Length=461
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49140.1 | Symbols: | Complex I subunit NDUFS6 | chr1:18176... 761 0.0
AT3G18410.1 | Symbols: | Complex I subunit NDUFS6 | chr3:63231... 388 2e-107
> AT1G49140.1 | Symbols: | Complex I subunit NDUFS6 | chr1:18176772-18178298
REVERSE LENGTH=619
Length=619
Score = 761 bits (412), Expect = 0.0
Identities = 445/461 (97%), Gaps = 1/461 (0%)
Strand=Plus/Plus
Query 1 AGAAATCAAAAATCCGATGGGGAGGAAGAAGGGATTGCCGGAGTTCGAAGAGTCGGCGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 AGAAATCAAAAATCCGATGGGGAGGAAGAAGGGATTGCCGGAGTTCGAAGAGTCGGCGCC 73
Query 61 CGATGGATTCGATCCTGAGAATCCGTACAAGGATCCGGTTGCGATGGTGGAGATGAGAGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 GGATGGATTCGATCCTGAGAATCCGTACAAGGATCCGGTTGCGATGGTGGAGATGAGAGA 133
Query 121 ACATATTGTTCGTGAGAAGTGGATCCAAATCGAGAAGGCTAAGATCTTGCGCGAGAAGGT 180
||| |||||||||||||| |||||||| |||||||||||||||||||| || ||||||||
Sbjct 134 ACACATTGTTCGTGAGAAATGGATCCATATCGAGAAGGCTAAGATCTTACGTGAGAAGGT 193
Query 181 CAAATGGTGTTACCGCGTCGAAGGCGTTAACCATTACCAGAAGTGTCGTCATCTTGTTCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 CAAATGGTGTTACCGCGTCGAAGGCGTTAACCATTACCAGAAGTGTCGTCATCTTGTTCA 253
Query 241 GCAGTATCTCGACGCCACTCGCGGCGTCGGTTGGGGCAAAGACCACCGTCCTATCTCTCT 300
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 254 GCAGTATCTCGATGCCACTCGCGGCGTTGGTTGGGGCAAAGACCACCGTCCTATCTCTCT 313
Query 301 CCACGGTCCTAAGCTAGTAGCTGTTGAAGAAGCTGAATAAATGTTGTGTGCGTGACTGAT 360
||||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 314 TCACGGTCCTAAGCCAGTAGCTGTTGAAGAAGCTGAATGA-TGTTGTGTGCGTGATTGAT 372
Query 361 CTTAGGTGAGTGAGAGCTTTGATTACCAAACATGAATGGGGTCTCTGTTGCAAGTTAATG 420
||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 373 CTTTGGTGAGTGAGAGCTTTGATTACCATACATGAATGGAGTCTCTGTTGCAAGTTAATG 432
Query 421 CTCCACATCAAGGTTGTTACTTGATTTATGCTTTTCTGTTT 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CTCCACATCAAGGTTGTTACTTGATTTATGCTTTTCTGTTT 473
> AT3G18410.1 | Symbols: | Complex I subunit NDUFS6 | chr3:6323162-6324579
FORWARD LENGTH=591
Length=591
Score = 388 bits (210), Expect = 2e-107
Identities = 296/337 (88%), Gaps = 8/337 (2%)
Strand=Plus/Plus
Query 17 ATGGGGAGGAAGAAGGGATTGCCGGAGTTCGAAGAGTCGGCGCCCGATGGATTCGATCCT 76
|||||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||||
Sbjct 42 ATGGGGAGAAAGAAGGGATTACCGGAGTTCGAAGAGTCGGCGCCGGATGGCTTTGATCCG 101
Query 77 GAGAATCCGTACAAGGATCCGGTTGCGATGGTGGAGATGAGAGAACATATTGTTCGTGAG 136
|| ||||| |||||||||||||| |||||||| || |||||||| || || ||||| |||
Sbjct 102 GAAAATCCATACAAGGATCCGGTGGCGATGGTTGAAATGAGAGAGCACATCGTTCGAGAG 161
Query 137 AAGTGGATCCAAATCGAGAAGGCTAAGATCTTGCGCGAGAAGGTCAAATGGTGTTACCGC 196
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 162 AAATGGATCCAAATCGAGAAGGCTAAGATCTTGCGTGAGAAGGTCAAATGGTGTTACCGC 221
Query 197 GTCGAAGGCGTTAACCATTACCAGAAGTGTCGTCATCTTGTTCAGCAGTATCTCGACGCC 256
|||||||| || || || || ||||| ||||||||||||||||||||||||||||| ||
Sbjct 222 GTCGAAGGAGTCAATCACTATCAGAAATGTCGTCATCTTGTTCAGCAGTATCTCGATTCC 281
Query 257 ACTCGCGGCGTCGGTTGGGGCAAAG-ACCACCGTCCTATCTCTCTCCACGGTCCTAAGCT 315
|||||||||||||||||||| |||| | || |||||||| || ||||||||||| || |
Sbjct 282 ACTCGCGGCGTCGGTTGGGG-AAAGGATCATCGTCCTATTTCGCTCCACGGTCCCAAACC 340
Query 316 AGTAG-CTGTTGAAGAAGCTGAATAAATGTTGTGTGC 351
| || ||||||||| |||||||| ||||||||||
Sbjct 341 GG-AGGCTGTTGAAG---CTGAATAA-TGTTGTGTGC 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21967006313
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5