BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474060

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49170.1 | Symbols:  | Protein of unknown function (DUF167) ...   784    0.0  


> AT1G49170.1 | Symbols:  | Protein of unknown function (DUF167) 
| chr1:18183266-18184443 REVERSE LENGTH=685
Length=685

 Score =  784 bits (424),  Expect = 0.0
 Identities = 473/497 (95%), Gaps = 2/497 (0%)
 Strand=Plus/Plus

Query  1    AAAACTAAAATGGCTCCGACGAAGAAAGGAAAGAAGACCAAAGCGTCGGCAGAATCAACG  60
            |||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct  1    AAAACTAAAATGGCTCCGACGAAGAAAGGAAAGAAGACCAAATCGGCGGCGGAATCAACG  60

Query  61   ACGGTCACAGAATCGTCGATCTTTCCGGCGTGTTTGCGTCTCCTTACACCTTCCTCCGTC  120
            |||||||||||||| || | ||||||| ||||||||||||||||||||||||||||||||
Sbjct  61   ACGGTCACAGAATCTTCAAGCTTTCCGACGTGTTTGCGTCTCCTTACACCTTCCTCCGTC  120

Query  121  GCTATCACCATTCATGCGAAGCCAGGTTCCAAAGCCGCCTCCATCACCGATGTGAGCGAC  180
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCTATCACCATCCATGCGAAGCCAGGTTCCAAAGCCGCCTCCATCACCGATGTGAGCGAC  180

Query  181  GAAGCGGTAGGCGTTCAAATCGACGCTCCGGCTAGAGATGGTGAAGCTAACGCTGCTCTT  240
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  181  GAAGCGGTAGGCGTTCAAATCGACGCGCCGGCTAGAGATGGTGAAGCTAACGCAGCTCTT  240

Query  241  CTCGAGTTCATTAGCTCTGTATTGGGGGTGAAAAGAAGACAAGTCTCACTTGGTTCGGGA  300
            ||||||| ||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  241  CTCGAGTACATGAGCTCTGTATTGGGGGTGAAAAGAAGACAAGTCTCTCTCGGTTCGGGA  300

Query  301  TCTAAGTCTCGAGATAAAGTTGTGATTGTTGAGGATATGACCCAACAAAGCGTTTTTCAA  360
            || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  301  TCGAAGTCTCGAGATAAAGTTGTGATTGTTGAGGATATGACCCAACAGAGTGTTTTTCAA  360

Query  361  GCTTTGTCCCAAGCATCAAAACCTACCTAAAGATCCCCAAGCCTATAACTAACTATATGG  420
            ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  361  GCTTTGTCCCAAGCATCAAAACCTACCTAAAGATCTCCAAGCCTGTAACTAACTATATGG  420

Query  421  AGGAAACAAAA-CATGAAAAGCTAAATGCTTCATGTTCACTTAAGGTACGAATGGTTTGA  479
            || |||| ||| ||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct  421  AG-AAACTAAATCATCAAAAGCTAAATGGTTCATGTTCACTTAAGGTACGAATGGTTTGA  479

Query  480  AGAGTTTCAGGATTTGT  496
            |||||||||||||||||
Sbjct  480  AGAGTTTCAGGATTTGT  496



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5