BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474061
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49190.2 | Symbols: RR19 | response regulator 19 | chr1:1819... 1206 0.0
> AT1G49190.2 | Symbols: RR19 | response regulator 19 | chr1:18191267-18193782
FORWARD LENGTH=2128
Length=2128
Score = 1206 bits (653), Expect = 0.0
Identities = 823/905 (91%), Gaps = 12/905 (1%)
Strand=Plus/Plus
Query 1 ATGTTGGTAGGAAAGATAAGTGGATATGAAGATAATACTCGTTCTTTGGAGCGAGAAACA 60
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 76 ATGTTGGTGGGAAAGATAAGTGGATATGAAGATAATACTCGCTCTTTGGAGCGAGAAACA 135
Query 61 TCTGAAATCACTTCTCTTCTCAGCCAATTTCCAGGGAATACTAATGTTCTTGTTGTTGAC 120
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 136 TCTGAAATCACTTCTCTTCTCAGCCAATTTCCGGGGAATACTAATGTCCTTGTTGTTGAC 195
Query 121 ACCAATTTCACCACTCTACTCAATATGAAACAAATCATGAAACAATACGCCTATCAAGTG 180
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 196 ACCAATTTCACCACTCTACTCAACATGAAACAAATCATGAAACAATACGCTTATCAAGTG 255
Query 181 ACTATTGAGACAGATGCCGAAAAAGCTCTTGCGTATTTGACAAGCTGCAAACATGAAATT 240
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 256 TCTATTGAGACAGATGCAGAAAAAGCTCTTGCGTTTTTGACAAGCTGCAAACATGAAATC 315
Query 241 AATATTGTGATTTGGGATTTTCATATGCCTGGAATTGATGGACTTCAAGCTCTCAAGAGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 AATATTGTGATTTGGGATTTTCATATGCCTGGAATTGATGGACTTCAAGCTCTCAAGAGC 375
Query 301 ATTGGTTCAAAGATGGATTTACCTGTAGTGATTATGTCTGATGATAATCAAACAGAATCG 360
||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 376 ATTACTTCAAAGTTGGATTTACCTGTAGTGATTATGTCTGATGATAATCAAACGGAATCT 435
Query 361 GTGATGAAAGCAACAATAAACGGTGCTTGTGACTATGTTGTGAAACCGGTTAAAGAAGAG 420
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 436 GTGATGAAAGCAACATTTTACGGTGCTTGTGACTATGTTGTGAAACCGGTTAAAGAAGAG 495
Query 421 GTAATAGCCAATATATGGCAACACATTGTACGGAAGATACTGATGTCTAAACCGGATGTA 480
||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 496 GTAATGGCCAATATATGGCAACACATTGTACGGAAGAGGCTGATCTTTAAACCGGATGTT 555
Query 481 GTTCCACCGGTTCAATCAGATCTGGCTCAG-TCTGACGGTTTAGACCAAGGCCAAGACAA 539
| |||||||||||||||||||| ||||| | |||||| |||||||||||| | || |
Sbjct 556 GCTCCACCGGTTCAATCAGATCCGGCTC-GCTCTGACCGTTTAGACCAAGTC-AA-A--- 609
Query 540 AGCTGATTTCAAGATCGTAGACGAAGAACCAA-ACATCAATGAGAAACCGCTGATCACAC 598
|||||||||||||||||||| || ||||||| | |||||||||| |||||||||||||
Sbjct 610 -GCTGATTTCAAGATCGTAGAAGATGAACCAATA-ATCAATGAGACACCGCTGATCACAT 667
Query 599 GGACCGAAGAAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCGACGAGGTAGGCCAAC 658
||||||||||||||||||||||||| |||||||||||||||| | || || | | ||||
Sbjct 668 GGACCGAAGAAATTCAACCGGTTCAGTCAGATCTGGTTCAAGCCAACAAGTTCGACCAAG 727
Query 659 TTAATGACTATTCCAAAATCATGAACCAAGATAACATGTTCAACAAAGCAGCAACGAAAC 718
| |||| ||||||| |||||||||||||||||||||||||||||||||| || | ||||
Sbjct 728 TGAATGGCTATTCCCCAATCATGAACCAAGATAACATGTTCAACAAAGCACCACCTAAAC 787
Query 719 CGCGGTTGACATGGACCGGAGTAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCAACA 778
|||| |||| ||||| | ||| |||||||||||||||||| ||||||||||| ||| |
Sbjct 788 CGCGAATGACGTGGACAGAAGTTATTCAACCGGTTCAATCAAATCTGGTTCAAA-CAAAA 846
Query 779 -AGTTCGACCAACTCAATGACTATTCCCAAATCATGAACCAAGATAACATGTTCAACAAA 837
|||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 847 GAGTTCGGCCAACTCAATGACTATTCCCAAATCATGAACCAAGATAGCATGTACAACAAA 906
Query 838 GCAGCAAAGAAACCGCGACTGACATGGACCGATGTATTTCAACCGGTTCAATCATATCTG 897
||||||| ||||| | | |||| |||||||| | | ||||||||||||||||| ||||
Sbjct 907 GCAGCAACCAAACCACAATTGACGTGGACCGAAGAAATTCAACCGGTTCAATCAGGTCTG 966
Query 898 GTTCA 902
|||||
Sbjct 967 GTTCA 971
Score = 697 bits (377), Expect = 0.0
Identities = 507/569 (89%), Gaps = 12/569 (2%)
Strand=Plus/Plus
Query 599 GGACCGAAGAAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCGACGAGGT-AGGCCAA 657
|||||||||||||||||||||||||||||| ||||||||||| | ||||| | | || ||
Sbjct 932 GGACCGAAGAAATTCAACCGGTTCAATCAGGTCTGGTTCAAGCCAACGAGTTCA-GCAAA 990
Query 658 CTTAAT-GACTATTCCAAAATCATGAACCAAGATAACATGTTCAACAAAGCAGCAACGAA 716
| ||| || |||||| ||| |||||||||||||| ||||||||||||| ||||||| ||
Sbjct 991 GTGAATGGA-TATTCCCAAAGCATGAACCAAGATAGCATGTTCAACAAATCAGCAACCAA 1049
Query 717 ACCGCGGTTGACATGGACCGGAGTAATTCAACCGGTTCAATCAGATCTGGTTCAAGT-CA 775
||||| |||||||||| || | || ||||||||||||||||||||||||||||| | ||
Sbjct 1050 CCCGCGATTGACATGGAACGAATTACTTCAACCGGTTCAATCAGATCTGGTTCAA-TCCA 1108
Query 776 ACAAG-TTCGACCAACTCAATGACTATTCCCAAATCATGAACCAAGATAACATGTTCAAC 834
| || || | |||| ||| ||||||||| |||||||||||| |||||||||||||||||
Sbjct 1109 ATGAGTTTAG-CCAATTCAGTGACTATTCTCAAATCATGAACGAAGATAACATGTTCAAC 1167
Query 835 AAAGCAGCAAAGAAACCGCG-ACTGACATGGACCGATGTATTTCAACCGGTTCAATCATA 893
|||||||||||||||||||| | ||||||||| || ||||||||||||||||||||| |
Sbjct 1168 AAAGCAGCAAAGAAACCGCGGA-TGACATGGAGTGAAGTATTTCAACCGGTTCAATCACA 1226
Query 894 TCTGGTTCAGACTGCCGGTTTAGACCGAGACTACCATGATTCCATAACCATAAACGGAGG 953
|||||||| ||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1227 TCTGGTTCCGACTGACGGTTTAGACCGAGACCACTTTGATTCCATAACCATAAACGGAGG 1286
Query 954 TAACGGCAGACAAAACACGGAAAAGAAAGAAGCAAAAAAGCCACGGAAGCCGCGGATGAC 1013
|||||||| |||||||| |||||||||| ||| |||||| ||||||||||||||||||||
Sbjct 1287 TAACGGCATACAAAACATGGAAAAGAAACAAGGAAAAAAACCACGGAAGCCGCGGATGAC 1346
Query 1014 ATGGACCGAAGATCTTCACCAAAAATTTCTGGAAGCCATCGAAATAGTTGGTGGCATCGA 1073
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1347 GTGGACCGAAGAGCTTCACCAAAAATTTCTGGAAGCCATCGAAATAATTGGTGGTATCGA 1406
Query 1074 AAAAGCTAATCCAAAGGTACTTCTCGACTGCTTGCTAGAAATGAAGG-TAGAAGGAATCA 1132
||||||||| |||||||||||| |||| ||||||| |||||||| || |||||||||| |
Sbjct 1407 AAAAGCTAACCCAAAGGTACTTGTCGAATGCTTGCAAGAAATGA-GGATAGAAGGAATTA 1465
Query 1133 CTCGAAGCAATGTGGCCAGTCATCTTCAG 1161
|| ||||||||||||| ||||||||||||
Sbjct 1466 CTAGAAGCAATGTGGCAAGTCATCTTCAG 1494
Score = 472 bits (255), Expect = 6e-132
Identities = 379/436 (87%), Gaps = 20/436 (5%)
Strand=Plus/Plus
Query 1162 AAACACCGTATCAATCTTGAAGAAAACCAAATTCCTGAAGAAACACAAGAGGA-TGGTTG 1220
|||||||||||||||||||||||||||||||||||| || ||||||||| ||| ||||||
Sbjct 1525 AAACACCGTATCAATCTTGAAGAAAACCAAATTCCTCAACAAACACAAG-GGAATGGTTG 1583
Query 1221 GTCCACTGCGTATAATAGACCAGCTCCTTCTCTCCAAGGTTCAGACAATGTCAACACAAC 1280
| ||||||||||| || || |||||| ||||||||||||||||||||||||||||||||
Sbjct 1584 GGCCACTGCGTATGGTACACTAGCTCCCTCTCTCCAAGGTTCAGACAATGTCAACACAAC 1643
Query 1281 AATATCACCATACCTAATGAATGGACGAGCCG-T--GAACCAGATTCAGCAGAATCAATA 1337
|||| || | ||||| |||||||| | |||| | |||||| || ||||||||||||||
Sbjct 1644 AATACCATCGTACCTTATGAATGGTCCAGCCACTTTGAACCAAATCCAGCAGAATCAATA 1703
Query 1338 TGAAAATGGTTACTTGACAATGAACAACAACCAGGTCATAACCAATCCTCTGCCTCCTTT 1397
| ||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1704 TCAAAATGGTTTCTTGACAATGAACAACAACCAGATCATAACCAATCCTCCGCCTCCTTT 1763
Query 1398 GCCATATCTTGACCATCAGATTCTCCATCAGCATCAACAACAGCAATATCCGTCTTCTCC 1457
||| ||| ||| || | | |||| || | ||||||||| ||| |||||||||
Sbjct 1764 GCCCTAT-TTG-------GA--C-C-ATCATCA-C--CAACAGCAACATCAGTCTTCTCC 1808
Query 1458 TCAATTTAATTACCTGATGAGCAACGAAGAACCTCAACAAGCCTCTGGCATCTATGCAAC 1517
|||||||||||||||||||| ||| ||||||| || |||||||||||| ||| ||| ||
Sbjct 1809 TCAATTTAATTACCTGATGAACAATGAAGAACTTCTTCAAGCCTCTGGCCTCTCTGCGAC 1868
Query 1518 GGATCTTGAACTCACTTATCCAAGTCTACCATATGATCCACAAGAGCATCTAATCAAGGG 1577
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct 1869 AGATCTTGAACTCACTTATCCAAGTTTACCATATGATCCACAAGAGTATCTAATCAATGG 1928
Query 1578 CTACAATTATAATTAG 1593
||||||||||||||||
Sbjct 1929 CTACAATTATAATTAG 1944
Score = 222 bits (120), Expect = 7e-57
Identities = 165/187 (88%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 717 ACCGCGGTTGACATGGACCGGAGTAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCAA 776
||||| | | |||||||||| || ||||||||||||||| |||||||||||||||| |||
Sbjct 654 ACCGCTGATCACATGGACCGAAGAAATTCAACCGGTTCAGTCAGATCTGGTTCAAGCCAA 713
Query 777 CAAGTTCGACCAACTCAATGACTATTCCCAAATCATGAACCAAGATAACATGTTCAACAA 836
||||||||||||| | |||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 714 CAAGTTCGACCAAGTGAATGGCTATTCCCCAATCATGAACCAAGATAACATGTTCAACAA 773
Query 837 AGCAGCAAAGAAACCGCGACTGACATGGACCGATGT-ATTTCAACCGGTTCAATCATATC 895
|||| || ||||||||| |||| ||||| || || ||| ||||||||||||||| |||
Sbjct 774 AGCACCACCTAAACCGCGAATGACGTGGACAGAAGTTATT-CAACCGGTTCAATCAAATC 832
Query 896 TGGTTCA 902
|||||||
Sbjct 833 TGGTTCA 839
Score = 185 bits (100), Expect = 9e-46
Identities = 154/179 (86%), Gaps = 8/179 (4%)
Strand=Plus/Plus
Query 595 ACACGGACCGAAGAAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCGAC-GAGGT-AG 652
||| ||| |||| | ||||||||||||||||||||||||||||| || | ||| | ||
Sbjct 1060 ACATGGAACGAATTACTTCAACCGGTTCAATCAGATCTGGTTCAA-TCCAATGAGTTTAG 1118
Query 653 GCCAACTTAA-TGACTATTC-CAAAATCATGAACCAAGATAACATGTTCAACAAAGCAGC 710
|||| || | ||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 1119 -CCAA-TTCAGTGACTATTCTCAAA-TCATGAACGAAGATAACATGTTCAACAAAGCAGC 1175
Query 711 AACGAAACCGCGGTTGACATGGACCGGAGTAATTCAACCGGTTCAATCAGATCTGGTTC 769
|| |||||||||| ||||||||| | |||| ||||||||||||||||| |||||||||
Sbjct 1176 AAAGAAACCGCGGATGACATGGAGTGAAGTATTTCAACCGGTTCAATCACATCTGGTTC 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78664254015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5