BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474062
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49200.1 | Symbols: | RING/U-box superfamily protein | chr1... 1391 0.0
AT1G49210.1 | Symbols: | RING/U-box superfamily protein | chr1... 952 0.0
AT1G49220.1 | Symbols: | RING/U-box superfamily protein | chr1... 850 0.0
AT3G18773.1 | Symbols: | RING/U-box superfamily protein | chr3... 429 2e-119
> AT1G49200.1 | Symbols: | RING/U-box superfamily protein | chr1:18198227-18199168
FORWARD LENGTH=942
Length=942
Score = 1391 bits (753), Expect = 0.0
Identities = 870/926 (94%), Gaps = 10/926 (1%)
Strand=Plus/Plus
Query 1 AAGAAGCAATAACCAAACAAAGCCAAGCAAAGCAGAGAGAAGAG-----A-CTTTGATTC 54
|||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 1 AAGAAGCAATAACCAAACAAAGCCAAGCAAAGCAGAGAGAAGAGACCAAAGCTTT--TTC 58
Query 55 AGAGACT-AAAAAATGGCTGCAAATGAATTAGCTTCTTCTTCAGCACAAGCCTTCCAAGA 113
| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 59 AAAGACTAAAAAAATGGCTGCAAATGAATTAGCTTCTTCTTCAGTTCAAGCCTTCCAAGA 118
Query 114 GCAATCCCTTAGAGGTTTTGTCTCTAGAAAGCTTCTTCTGCACAATCCATTTGACCACAA 173
|||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 119 GCAATCCCTTGGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCATTTGACCACAA 178
Query 174 CACTCAACGAGCCTTTGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAG 233
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CACTCAAAGAGCCTTTGCAGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAG 238
Query 234 TGGGAATGTCCTGATGCTTCTCTCAATCCTCATCTGTGGCATCATCTGTTGCCTCGGGTT 293
||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 TGGAAATGTTCTGATGCTTCTCTCAGTCCTCATCTGTGGCATCATCTGTTGCCTCGGGTT 298
Query 294 ACATTACATCATTCGTTGTGCATTCAGACGTACTTCAAGTTTCATGATCTCCGAACCTAT 353
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 299 ACATTACATCATTCGTTGTGCATTCAGACGTACTTCAAGTTTCATGATCTCTGAGCCTAT 358
Query 354 CTCTGGTCTTTCAACACCATGCGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAG 413
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 359 AGCCGGTCTTTCAACACCATGCGGTTCATCAAACAAAGGAATCAATAAGAAAGCTCTTAG 418
Query 414 GATGTTCCCAGTTGTGAGTTACTCACCTGAGATGAACCTGCCGGGACTTGGCGAAGAGTG 473
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 419 AATGTTCCCAGTTGTGAGTTACTCACCTGAGATGAACTTGCCGGGGCTTGGCGAAGAGTG 478
Query 474 TGTCATTTGTTTGTCGGATTTTGTTTCCGGTGAACAGATCAGGATGCTCCCTAAGTGCCA 533
||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 479 TGTCATTTGTTTGTCAGATTTTGTTTCCGGTGAACAGATTAGGATGCTACCTAAGTGCCA 538
Query 534 CCATGGGTTCCATGTTCGTTGCATTGACAAGTGGCTTCAACAACGTTTGACTTGTCCGAA 593
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 539 CCATGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCAACAACATTTGACTTGTCCAAA 598
Query 594 ATGCAGACACTGTCTGGTTGAGACATGCCAAAAGATCTTAGGTGACTTCAGTCAAGCTGA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATGCAGACACTGTCTGGTTGAGACATGCCAAAAGATCTTAGGTGACTTCAGTCAAGCTGA 658
Query 654 TCAAGTGGCAGCAACACCAACAGAGAGCGTAATTGTCATGATTTCTCCTTTAGAACCTGA 713
||||||||||||||||||||||| |||||||||||||| |||| ||||| | ||||||||
Sbjct 659 TCAAGTGGCAGCAACACCAACAGCGAGCGTAATTGTCAGGATTGCTCCTCTGGAACCTGA 718
Query 714 AGGAAGAGTAAACACTTTAAGAGAAAGCAGCTAGATGCCAAGAGAGACAGAAACCATCAA 773
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 719 AGGAAGAGTAAACATTTTAAGAGAAAGCAGCTAGATGCCAAGAGAGGCAGAAACCATCAA 778
Query 774 AAATCAGAATTTGTGATTTAGTTAGATAGGAGATTTTTGATCTGAGCACAATTCATGTCT 833
|||||| |||| ||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 779 AAATCAAAATTCGTGATTTAGTTAGATAGGAGATTTTTGATCTGAGCTTAGTTCATGTCT 838
Query 834 TCAGCTTTAGAAGGATACATCAGt-tttttttATGCCTTTCTTTATTGCCTGTAGCACAA 892
| |||| ||||||||||| ||| | |||||||||| |||||||| |||||||||||||||
Sbjct 839 TTAGCTATAGAAGGATACCTCAATGTTTTTTTATGTCTTTCTTTTTTGCCTGTAGCACAA 898
Query 893 AGTGTATACAGATTACAGAAAGAATA 918
||||||||||||||||||| ||||||
Sbjct 899 AGTGTATACAGATTACAGAGAGAATA 924
> AT1G49210.1 | Symbols: | RING/U-box superfamily protein | chr1:18201889-18202764
FORWARD LENGTH=876
Length=876
Score = 952 bits (515), Expect = 0.0
Identities = 732/834 (88%), Gaps = 26/834 (3%)
Strand=Plus/Plus
Query 4 AAGCAATAACCAAACAAAGCCAAGCAAAGCAGAGAGAAGAGACTTTG------A-----T 52
||||||||| |||||||||||||| ||||||||||||| |||||||| | |
Sbjct 32 AAGCAATAAGCAAACAAAGCCAAGAAAAGCAGAGAGAACAGACTTTGATTTAAAGCTTTT 91
Query 53 TCAGAGACTAAAAAATGGCTGCAAATGAATTAGCTTCTTCTTCAGCACAAGCCTTCCAAG 112
||| ||| ||||| ||| ||||||| || ||| | || ||||||| ||| |||| ||||
Sbjct 92 TCAAAGAGTAAAACATGTCTGCAAACGAGTTA-C--CTGCTTCAGCTCAATCCTTGCAAG 148
Query 113 AGCAATCCCTTAG-AGGTTTTGTCTCTAGAAAGCTTCTTCTGCACAATCCATTTGACCAC 171
| |||| |||| | | |||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 149 AACAATTCCTTGGCA-GTTTTGTCACTAGAAAGCTTCTTCTGCACGACCCATTTGACCAC 207
Query 172 AACACTCAACGAGCCTTTGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTC 231
||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 208 AACTCTCTTCGAGTATTTGCGGTTGCACCATCTCCTCTCATAACACATGAGAACAACCTC 267
Query 232 AGTGGGAATGTCCTGATGCTTCTCTCAATCCTCATCTGTGGCATCATCTGTTGCCTCGGG 291
| |||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 268 AAAGGGAATGTTCTGATGCTTCTCTCAGTTCTCATCTGTGGCATCATCTGTTGCCTTGGG 327
Query 292 TTACATTACATCATTCGTTGTGCATTCAGACGTACTTCAAGTTTCATGATCTCCGAACCT 351
||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| || |||
Sbjct 328 TTACATTACATCATTCGCTGTGCATTCAGACGTTCTTCACGTTTCATGATCTCTGAGCCT 387
Query 352 ATCTCTGGTCTTTCAACACCATGCGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTT 411
|| || |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 388 ATATCCAGTCTTTCAACACCACGAAGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTG 447
Query 412 AGGATGTTCCCAGTTGTGAGTTACTCACCTGAGATGAACCTGCC-GGGACTTGGCGAAGA 470
|||||||||||||| ||||||||||||| |||||||||| |||| |||| |||| |||||
Sbjct 448 AGGATGTTCCCAGTCGTGAGTTACTCACGTGAGATGAACTTGCCCGGGA-TTGGTGAAGA 506
Query 471 GTGTGTCATTTGTTTGTCGGATTTTGTTTCCGGTGAACAGATCAGGATGCTCCCTAAGTG 530
|||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||||
Sbjct 507 GTGTGTCATTTGTTTGTCGGATTTTGTTTCTGGTGAACAGCTCAGGCTGCTCCCCAAGTG 566
Query 531 CCACCATGGGTTCCATGTTCGTTGCATTGACAAGTGGCTTCAACAACGTTTGACTTGTCC 590
| | ||||||||||||||||||||||| ||||||||||||||||| | |||||| |||||
Sbjct 567 CAATCATGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCAACATCATTTGACATGTCC 626
Query 591 GAAATGCAGACACTGTCTGGTTGAGACATGCCAAAAGATCTTAGGTGACTTCAGTCAAGC 650
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 627 GAAATGCAGACACTGTCTGGTTGAGACATGTCAAAAGATATTAGGTGACTTCAGTCAAGC 686
Query 651 TGAT-CAAGTGGCAGCAACACCAACAGAGAGCGTAATTGTCATGATTTCTCCTTTAGAAC 709
|||| ||| ||||| ||||||||||||||||||||||||||| |||| |||| ||||||
Sbjct 687 TGATTCAA-TGGCATCAACACCAACAGAGAGCGTAATTGTCAGGATTGATCCTCTAGAAC 745
Query 710 CTGAAGGAAGAGTAAACACTTTAAGAGAAAGCAGCTAGATGCCAAGAGA-GACAGAAACC 768
|||||||||||||||||||||| ||||||||||||||||||| |||| | | ||||||||
Sbjct 746 CTGAAGGAAGAGTAAACACTTTTAGAGAAAGCAGCTAGATGC-AAGAAAAG-CAGAAACC 803
Query 769 ATCAAAAATC-AGAATTTGTGATTTAGTTAGATAGGAGATTTTTGAT-CTGAGC 820
| || |||| ||||| ||| | |||||||||| ||||||| ||| || |||
Sbjct 804 AACATCAATCTAGAATCTGTCAGC-AGTTAGATAGAAGATTTTAGATTCTAAGC 856
> AT1G49220.1 | Symbols: | RING/U-box superfamily protein | chr1:18205934-18206701
FORWARD LENGTH=768
Length=768
Score = 850 bits (460), Expect = 0.0
Identities = 591/653 (91%), Gaps = 13/653 (2%)
Strand=Plus/Plus
Query 63 AAAAATGGCTGCAAATGAATTAGCTTCTTCTTCAGCACAAGCCTTCCAAGAGCAATCCCT 122
||||||| |||||||||| ||| | |||||||||| |||||||||||||| |||| |||
Sbjct 9 AAAAATGTCTGCAAATGAGTTA-C--CTTCTTCAGCTCAAGCCTTCCAAGAACAATTCCT 65
Query 123 TAGAGGTTTTGTCTCTAGAAAGCTTCTTCTGCACAATCCATTTGACCACAACACTCAACG 182
| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 66 TGGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCATTTGACCACAACACTCAACG 125
Query 183 AGCCTTTGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAGTGGGAATGT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 AGCCTTTGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAGTGGGAATGT 185
Query 243 CCTGATGCTTCTCTCAATCCTCATCTGTGGCATCATCTGTTGCCTCGGGTTACATTACAT 302
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 186 TATGATGCTTCTCTCAATCCTCATTTGTGGCATTATCTGCTGCCTCGGGTTACATTACAT 245
Query 303 CATTCGTTGTGCATTCAGACGTACTTCAAGTTTCATGATCTCCGAACCTAT-CTCTGGTC 361
||||||||||||| |||||||| || || |||||||||||||||| ||| | | | |||
Sbjct 246 CATTCGTTGTGCACTCAGACGTTCTACACGTTTCATGATCTCCGAGCCTGTAC-CAAGTC 304
Query 362 TTTCAACACCATGCGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGGATGTTCC 421
|||| || || | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 305 TTTCGTCAACACGGGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGAATGTTCC 364
Query 422 CAGTTGTGAGTTACTCACCTGAGATGAACCTGCC-GGGACTTGGCGAAGAGTGTGTCATT 480
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct 365 CAGTTGTGAGTTACTCACCTGAGATGAACCTGCCAGGG-CTTGACGAAGAGTGTGTCATT 423
Query 481 TGTTTGTCGGATTTTGTTTCCGGTGAACAGATCAGGATGCTCCCTAAGTGCCACCATGGG 540
|||||||| ||||||||||||||||||||| ||||| ||||||| ||||| |||| |||
Sbjct 424 TGTTTGTCTGATTTTGTTTCCGGTGAACAGCTCAGGCTGCTCCCCAAGTGTAACCACGGG 483
Query 541 TTCCATGTTCGTTGCATTGACAAGTGGCTTCAACAACGTTTGACTTGTCCGAAATGCAGA 600
||||||||||||||||| ||||||||||||||||||| | |||||||||| |||||||||
Sbjct 484 TTCCATGTTCGTTGCATAGACAAGTGGCTTCAACAACATCTGACTTGTCCAAAATGCAGA 543
Query 601 CACTGTCTGGTTGAGACATGCCAAAAGATCTTAGGTGACTTCAGTCAAGCTGAT-CAAGT 659
|||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||
Sbjct 544 AACTGTCTGGTTGAGACGTGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGATTCA-GT 602
Query 660 GGCAGCA-ACACCAACAGAGAGCGTAATTGTCATGATT-TCTCCTTTAGAACC 710
| ||| | ||||||||||| ||||||||||| |||| | |||| |||||||
Sbjct 603 TACGGCAGA-ACCAACAGAGATCGTAATTGTCACGATTGT-TCCTCTAGAACC 653
> AT3G18773.1 | Symbols: | RING/U-box superfamily protein | chr3:6465825-6467175
FORWARD LENGTH=1351
Length=1351
Score = 429 bits (232), Expect = 2e-119
Identities = 444/543 (82%), Gaps = 27/543 (5%)
Strand=Plus/Plus
Query 221 AGAACAACCTCAGTGGGAATGTCCTGATGCTTCTCTCAATCCTCATCTGTGGCATCATCT 280
|||||||| | || || ||||| || ||||| ||||| ||||| | || || |||||||
Sbjct 613 AGAACAACTTGAGCGGCAATGTTCTCATGCTGCTCTCTATCCTTTTGTGCGGTATCATCT 672
Query 281 GTTGCCTCGGGTTACATTACATCATTCGTTGTGCATTCAGACGTACTTC-AAGTTTCATG 339
| | ||||||||| |||||||| || ||||||||||| | |||| | || ||||||||||
Sbjct 673 GCTCCCTCGGGTTGCATTACATAATACGTTGTGCATTTATACGTTC-TCGAAGTTTCATG 731
Query 340 ATCTCCGAACCTATCTCTGGT-CTTTCAACACCATGCGGTTCATC---AAACAAAGGAAT 395
||||| || || |||||| | | || |||||| | | |||||| ||||||||| ||
Sbjct 732 ATCTCTGATCCCATCTCT-ATCCCATCCACACCAAGAGATTCATCAGTAAACAAAGGGAT 790
Query 396 CAAGAAGAAAGCTCTTAGGATGTTCCCAGTTGTGAGTTACTCACCTGAGATGAACCTGCC 455
||||||||||||||| | |||||| |||||||||| |||||||||||| || ||||||||
Sbjct 791 CAAGAAGAAAGCTCTCAAGATGTTACCAGTTGTGAATTACTCACCTGAAATTAACCTGCC 850
Query 456 -GGGACTTGGCGAAGAGTGTGTCATTTGTTTGTCGGATTTTGTTTCCGGTGAACAGATCA 514
||| | || |||||||||||||| || ||||| ||||||||| | || |||||| | |
Sbjct 851 AGGG-GTCGGTGAAGAGTGTGTCATCTGCTTGTCTGATTTTGTTGCTGGAGAACAGCT-A 908
Query 515 -G-GATGC-TCCCTAAGTGCCACCATGGGTTCCATGTTCGTTGCATTGACAAGTGGCTTC 571
| | | | |||| |||||| ||||||| ||||| |||| ||||| ||||| ||||||
Sbjct 909 CGTG-TACTTCCC-AAGTGCAACCATGGATTCCACCTTCGCTGCATCGACAAATGGCTT- 965
Query 572 A-ACAACGTTTGACTTGTCCGAAATGCAGACACTGTCTGGTTGAGACATGCCAAAA-GAT 629
| |||| | |||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 966 ACGCAACATATGACTTGTCCGAAATGCAGACACTGTCTGGTTGATACATGCCAAAAAG-T 1024
Query 630 CTTAGGTGACTTC-A-GTCAAGCTGATCAAGTGGCAGCAACACCAACAGAGAGCGTA-AT 686
|||| |||||| | | | || ||||||||||||||||| ||| |||| |||||| || ||
Sbjct 1025 CTTAAGTGACTGCGATG-CA-GCTGATCAAGTGGCAGCGACAGCAACGGAGAGCATAGAT 1082
Query 687 TGTCATGA-TTTCTCCTTTAGAACCTGAAGGAAGAGTAAACACTTTAAGAGAAAGCAGCT 745
||| || |||||||| |||||||||||| ||||||| |||||| |||||||||||||
Sbjct 1083 A-TCA-GAATTTCTCCTCTAGAACCTGAAGCAAGAGTAGCCACTTTTAGAGAAAGCAGCT 1140
Query 746 AGA 748
|||
Sbjct 1141 AGA 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5