BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474063
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49210.1 | Symbols: | RING/U-box superfamily protein | chr1... 1153 0.0
AT1G49200.1 | Symbols: | RING/U-box superfamily protein | chr1... 928 0.0
AT1G49220.1 | Symbols: | RING/U-box superfamily protein | chr1... 869 0.0
> AT1G49210.1 | Symbols: | RING/U-box superfamily protein | chr1:18201889-18202764
FORWARD LENGTH=876
Length=876
Score = 1153 bits (624), Expect = 0.0
Identities = 735/789 (93%), Gaps = 6/789 (1%)
Strand=Plus/Plus
Query 1 AAGACCACTTTGCATTCCCCAAAACTTTAAGAAGCAATAA-C---CAAA--CAAGAAAAC 54
|||||||||||| |||||||||||||| || ||||||||| | |||| ||||||||
Sbjct 1 AAGACCACTTTGAATTCCCCAAAACTTAAAAAAGCAATAAGCAAACAAAGCCAAGAAAAG 60
Query 55 CAGAGAGAGCAGACTTTGATTTAAAGCTTTTTCAAGGAGTAAAAAATGTCTGTAAATGAG 114
|||||||| |||||||||||||||||||||||||| |||||||| ||||||| ||| |||
Sbjct 61 CAGAGAGAACAGACTTTGATTTAAAGCTTTTTCAAAGAGTAAAACATGTCTGCAAACGAG 120
Query 115 TTACCTTCTTCAGCTCAATACTTCCAAGAAGGATTCCTTGGCGGTTTTGTCTCTAGAAAG 174
|||||| |||||||||||| ||| |||||| |||||||||| |||||||| ||||||||
Sbjct 121 TTACCTGCTTCAGCTCAATCCTTGCAAGAACAATTCCTTGGCAGTTTTGTCACTAGAAAG 180
Query 175 CTTCTTCTGCACGACCCATTTGACCACAACTCTCTACGAGTCTTAGCGGTTGCACCATCT 234
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 181 CTTCTTCTGCACGACCCATTTGACCACAACTCTCTTCGAGTATTTGCGGTTGCACCATCT 240
Query 235 CCTCTCATAACCCATGAGAACAACCTCAGAGGGAATGTTTTGATGCTTCTCTCAGTCCTC 294
||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 241 CCTCTCATAACACATGAGAACAACCTCAAAGGGAATGTTCTGATGCTTCTCTCAGTTCTC 300
Query 295 ATCTGCGGCATCATCTGTTGCCTTGGGTTACATTACATCATTCGTTGTGCATTCAGACGT 354
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 ATCTGTGGCATCATCTGTTGCCTTGGGTTACATTACATCATTCGCTGTGCATTCAGACGT 360
Query 355 TCTTCACGTTTCATCATCTCTGAGCCTATATCCAGTCTTCCCGCACCACGAGGTTCATCA 414
|||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||
Sbjct 361 TCTTCACGTTTCATGATCTCTGAGCCTATATCCAGTCTTTCAACACCACGAAGTTCATCA 420
Query 415 GACAAAGGAATCAAGAAGAAAGCTCTCAGGATGTTCCCGGTCGTGAGTTACTCACGTGAG 474
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 421 AACAAAGGAATCAAGAAGAAAGCTCTGAGGATGTTCCCAGTCGTGAGTTACTCACGTGAG 480
Query 475 ATGAACCTGCCGGGGCTTGATAAAGAGTGTGTCATTTGTTTGTCGGATTTTGTTTCCGGT 534
|||||| |||| ||| ||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 481 ATGAACTTGCCCGGGATTGGTGAAGAGTGTGTCATTTGTTTGTCGGATTTTGTTTCTGGT 540
Query 535 GAACAGCTCAGGCTTCTCCCCAAGTGCAACCACGGGTTCCATGTTCGTTGCATAGACAAG 594
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 541 GAACAGCTCAGGCTGCTCCCCAAGTGCAATCATGGGTTCCATGTTCGTTGCATAGACAAG 600
Query 595 TGGCTTCGACAACATTTGACATGTCCGAAATGAAGACACTGTCTGGTTGAGACATGCCAA 654
||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 601 TGGCTTCAACATCATTTGACATGTCCGAAATGCAGACACTGTCTGGTTGAGACATGTCAA 660
Query 655 AAGATATTAGGTGACTTCAGTCAAGCTGATTCAATGGCAGCAACACCAACAGAGAGCGTA 714
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 AAGATATTAGGTGACTTCAGTCAAGCTGATTCAATGGCATCAACACCAACAGAGAGCGTA 720
Query 715 ATTGTCAGGATTGCTCCTCTAGAACCTGAAGGAAGAGTAAACACTTTTAGAGAAAGCAGC 774
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATTGTCAGGATTGATCCTCTAGAACCTGAAGGAAGAGTAAACACTTTTAGAGAAAGCAGC 780
Query 775 TAGATGCAA 783
|||||||||
Sbjct 781 TAGATGCAA 789
> AT1G49200.1 | Symbols: | RING/U-box superfamily protein | chr1:18198227-18199168
FORWARD LENGTH=942
Length=942
Score = 928 bits (502), Expect = 0.0
Identities = 678/762 (89%), Gaps = 15/762 (2%)
Strand=Plus/Plus
Query 29 AAGAAGCAATAACCAAAC-AAGAAAACCAGAG-AGAGCAGACTTTGATTTAAAGCTTTTT 86
|||||||||||||||||| ||| || || || |||| ||| || ||||||||||
Sbjct 1 AAGAAGCAATAACCAAACAAAGCCAAGCAAAGCAGAG-AGA-AGAGA-CCAAAGCTTTTT 57
Query 87 CAAGGAGT-AAAAAATGTCTGTAAATGAGTTA-C--CTTCTTCAGCTCAATACTTCCAAG 142
||| || | |||||||| ||| |||||| ||| | ||||||||| |||| ||||||||
Sbjct 58 CAAAGACTAAAAAAATGGCTGCAAATGAATTAGCTTCTTCTTCAGTTCAAGCCTTCCAAG 117
Query 143 AAG-GATTCCTTGGCGGTTTTGTCTCTAGAAAGCTTCTTCTGCACGACCCATTTGACCAC 201
|| || ||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 118 -AGCAATCCCTTGGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCATTTGACCAC 176
Query 202 AACTCTCTACGAGTCTTAGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTC 261
||| ||| | ||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 177 AACACTCAAAGAGCCTTTGCAGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTC 236
Query 262 AGAGGGAATGTTTTGATGCTTCTCTCAGTCCTCATCTGCGGCATCATCTGTTGCCTTGGG 321
|| || |||||| ||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 237 AGTGGAAATGTTCTGATGCTTCTCTCAGTCCTCATCTGTGGCATCATCTGTTGCCTCGGG 296
Query 322 TTACATTACATCATTCGTTGTGCATTCAGACGTTCTTCACGTTTCATCATCTCTGAGCCT 381
||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 297 TTACATTACATCATTCGTTGTGCATTCAGACGTACTTCAAGTTTCATGATCTCTGAGCCT 356
Query 382 ATATCCAGTCTTCCCGCACCACGAGGTTCATCAGACAAAGGAATCAAGAAGAAAGCTCTC 441
||| || ||||| | ||||| | ||||||||| ||||||||||||| |||||||||||
Sbjct 357 ATAGCCGGTCTTTCAACACCATGCGGTTCATCAAACAAAGGAATCAATAAGAAAGCTCTT 416
Query 442 AGGATGTTCCCGGTCGTGAGTTACTCACGTGAGATGAACCTGCCGGGGCTTGATAAAGAG 501
|| |||||||| || ||||||||||||| |||||||||| |||||||||||| |||||
Sbjct 417 AGAATGTTCCCAGTTGTGAGTTACTCACCTGAGATGAACTTGCCGGGGCTTGGCGAAGAG 476
Query 502 TGTGTCATTTGTTTGTCGGATTTTGTTTCCGGTGAACAGCTCAGGCTTCTCCCCAAGTGC 561
||||||||||||||||| ||||||||||||||||||||| | ||| | || || ||||||
Sbjct 477 TGTGTCATTTGTTTGTCAGATTTTGTTTCCGGTGAACAGATTAGGATGCTACCTAAGTGC 536
Query 562 AACCACGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCGACAACATTTGACATGTCCG 621
|||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 537 CACCATGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCAACAACATTTGACTTGTCCA 596
Query 622 AAATGAAGACACTGTCTGGTTGAGACATGCCAAAAGATATTAGGTGACTTCAGTCAAGCT 681
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 597 AAATGCAGACACTGTCTGGTTGAGACATGCCAAAAGATCTTAGGTGACTTCAGTCAAGCT 656
Query 682 GATTCAA-TGGCAGCAACACCAACAGAGAGCGTAATTGTCAGGATTGCTCCTCTAGAACC 740
||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 657 GAT-CAAGTGGCAGCAACACCAACAGCGAGCGTAATTGTCAGGATTGCTCCTCTGGAACC 715
Query 741 TGAAGGAAGAGTAAACACTTTTA-GAGAAAGCAGCTAGATGC 781
||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 716 TGAAGGAAGAGTAAACA-TTTTAAGAGAAAGCAGCTAGATGC 756
> AT1G49220.1 | Symbols: | RING/U-box superfamily protein | chr1:18205934-18206701
FORWARD LENGTH=768
Length=768
Score = 869 bits (470), Expect = 0.0
Identities = 596/657 (91%), Gaps = 7/657 (1%)
Strand=Plus/Plus
Query 87 CAAGGAGTAAAAAATGTCTGTAAATGAGTTACCTTCTTCAGCTCAATACTTCCAAGAAGG 146
||| |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1 CAAAGAGT-AAAAATGTCTGCAAATGAGTTACCTTCTTCAGCTCAAGCCTTCCAAGAACA 59
Query 147 ATTCCTTGGCGGTTTTGTCTCTAGAAAGCTTCTTCTGCACGACCCATTTGACCACAACTC 206
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct 60 ATTCCTTGGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCATTTGACCACAACAC 119
Query 207 TCTACGAGTCTTAGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAGAGG 266
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 TCAACGAGCCTTTGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAGTGG 179
Query 267 GAATGTTTTGATGCTTCTCTCAGTCCTCATCTGCGGCATCATCTGTTGCCTTGGGTTACA 326
||||||| |||||||||||||| ||||||| || ||||| ||||| ||||| ||||||||
Sbjct 180 GAATGTTATGATGCTTCTCTCAATCCTCATTTGTGGCATTATCTGCTGCCTCGGGTTACA 239
Query 327 TTACATCATTCGTTGTGCATTCAGACGTTCTTCACGTTTCATCATCTCTGAGCCTATATC 386
||||||||||||||||||| ||||||||||| |||||||||| ||||| |||||| || |
Sbjct 240 TTACATCATTCGTTGTGCACTCAGACGTTCTACACGTTTCATGATCTCCGAGCCTGTA-C 298
Query 387 CA-GTCTTCCCG-CACCACGAGGTTCATCAGACAAAGGAATCAAGAAGAAAGCTCTCAGG 444
|| ||||| | | || |||| ||||||||| ||||||||||||||||||||||||| ||
Sbjct 299 CAAGTCTTTC-GTCAACACGGGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGA 357
Query 445 ATGTTCCCGGTCGTGAGTTACTCACGTGAGATGAACCTGCCGGGGCTTGATAAAGAGTGT 504
|||||||| || ||||||||||||| ||||||||||||||| |||||||| ||||||||
Sbjct 358 ATGTTCCCAGTTGTGAGTTACTCACCTGAGATGAACCTGCCAGGGCTTGACGAAGAGTGT 417
Query 505 GTCATTTGTTTGTCGGATTTTGTTTCCGGTGAACAGCTCAGGCTTCTCCCCAAGTGCAAC 564
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 418 GTCATTTGTTTGTCTGATTTTGTTTCCGGTGAACAGCTCAGGCTGCTCCCCAAGTGTAAC 477
Query 565 CACGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCGACAACATTTGACATGTCCGAAA 624
||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||
Sbjct 478 CACGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCAACAACATCTGACTTGTCCAAAA 537
Query 625 TGAAGACACTGTCTGGTTGAGACATGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGAT 684
|| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 538 TGCAGAAACTGTCTGGTTGAGACGTGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGAT 597
Query 685 TCAATGGCAGCA-ACACCAACAGAGAGCGTAATTGTCAGGATTGCTCCTCTAGAACC 740
||| | | ||| | ||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 598 TCAGTTACGGCAGA-ACCAACAGAGATCGTAATTGTCACGATTGTTCCTCTAGAACC 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5