BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474064
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49220.1 | Symbols: | RING/U-box superfamily protein | chr1... 948 0.0
AT1G49200.1 | Symbols: | RING/U-box superfamily protein | chr1... 880 0.0
AT1G49210.1 | Symbols: | RING/U-box superfamily protein | chr1... 867 0.0
> AT1G49220.1 | Symbols: | RING/U-box superfamily protein | chr1:18205934-18206701
FORWARD LENGTH=768
Length=768
Score = 948 bits (513), Expect = 0.0
Identities = 603/647 (93%), Gaps = 4/647 (1%)
Strand=Plus/Plus
Query 1 AAAAATGTCTGCATATGAGTTACCTTCTTCAGCTCAAGCCTTCCAAGAGCAACTCAC-TG 59
||||||||||||| |||||||||||||||||||||||||||||||||| ||| || | ||
Sbjct 9 AAAAATGTCTGCAAATGAGTTACCTTCTTCAGCTCAAGCCTTCCAAGAACAATTC-CTTG 67
Query 60 GCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCGTTTGACCACAACACTCAACGAG 119
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 68 GCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCATTTGACCACAACACTCAACGAG 127
Query 120 ACTTTGCGGTTTCACCATCTCCTCTCATTACCCATGTGAACAACCTCAGGGGGAATGTTC 179
|||||||||| |||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 128 CCTTTGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAGTGGGAATGTTA 187
Query 180 TGATGCTTCTCTCAATCCTCATTTGTGGCATCATCTGCTGCCTCGGGCTGCATTACATCA 239
||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 188 TGATGCTTCTCTCAATCCTCATTTGTGGCATTATCTGCTGCCTCGGGTTACATTACATCA 247
Query 240 TTCGTTGTGCATC-CAGACGTTCTTCACGTTTCATGATCTCTGAGCCTATACCTAGTCAT 298
||||||||||| | |||||||||| |||||||||||||||| |||||| |||| |||| |
Sbjct 248 TTCGTTGTGCA-CTCAGACGTTCTACACGTTTCATGATCTCCGAGCCTGTACCAAGTCTT 306
Query 299 CCAACAACACGGGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGAATGTTCCCA 358
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TCGTCAACACGGGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGAATGTTCCCA 366
Query 359 GTTGTGAGTTACTCACCAGAGATGAACCTGCCGGGGCTTGGCGAAGAGTGTGTCATTTGT 418
||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||
Sbjct 367 GTTGTGAGTTACTCACCTGAGATGAACCTGCCAGGGCTTGACGAAGAGTGTGTCATTTGT 426
Query 419 TTGTCCGATTTTGTTTCTGGTGAACAGCTCAGGCTGCTCCCCAAGTGCAACCACGGATTC 478
||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 427 TTGTCTGATTTTGTTTCCGGTGAACAGCTCAGGCTGCTCCCCAAGTGTAACCACGGGTTC 486
Query 479 CATGTTCGTTGCATAGACAAGTGGCTTCAACAGCATTTGACATGTCCGAAATGCAGACAC 538
|||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||| ||
Sbjct 487 CATGTTCGTTGCATAGACAAGTGGCTTCAACAACATCTGACTTGTCCAAAATGCAGAAAC 546
Query 539 TGTCTGGTCGAGACATGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGATTCAGTTGCG 598
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 547 TGTCTGGTTGAGACGTGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGATTCAGTTACG 606
Query 599 GCAGAACCAACAGAAATCGTGATTGTCATGATTGCTCCTCTAGAACC 645
|||||||||||||| ||||| ||||||| ||||| ||||||||||||
Sbjct 607 GCAGAACCAACAGAGATCGTAATTGTCACGATTGTTCCTCTAGAACC 653
> AT1G49200.1 | Symbols: | RING/U-box superfamily protein | chr1:18198227-18199168
FORWARD LENGTH=942
Length=942
Score = 880 bits (476), Expect = 0.0
Identities = 621/690 (90%), Gaps = 13/690 (2%)
Strand=Plus/Plus
Query 1 AAAAATGTCTGCATATGAGTTA-C--CTTCTTCAGCTCAAGCCTTCCAAGAGCAACTCAC 57
||||||| ||||| |||| ||| | ||||||||| ||||||||||||||||||| || |
Sbjct 68 AAAAATGGCTGCAAATGAATTAGCTTCTTCTTCAGTTCAAGCCTTCCAAGAGCAA-TCCC 126
Query 58 -TGGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCGTTTGACCACAACACTCAAC 116
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 127 TTGGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCATTTGACCACAACACTCAAA 186
Query 117 GAGACTTTGCGGTTTCACCATCTCCTCTCATTACCCATGTGAACAACCTCAGGGGGAATG 176
||| |||||| ||| |||||||||||||||| ||||||| |||||||||||| || ||||
Sbjct 187 GAGCCTTTGCAGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAGTGGAAATG 246
Query 177 TTCTGATGCTTCTCTCAATCCTCATTTGTGGCATCATCTGCTGCCTCGGGCTGCATTACA 236
||||||||||||||||| ||||||| |||||||||||||| ||||||||| | |||||||
Sbjct 247 TTCTGATGCTTCTCTCAGTCCTCATCTGTGGCATCATCTGTTGCCTCGGGTTACATTACA 306
Query 237 TCATTCGTTGTGCATCCAGACGTTCTTCACGTTTCATGATCTCTGAGCCTATA-CCTAGT 295
||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| || ||
Sbjct 307 TCATTCGTTGTGCATTCAGACGTACTTCAAGTTTCATGATCTCTGAGCCTATAGCCG-GT 365
Query 296 CATCCAACAACACGGGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGAATGTTC 355
| | ||||| || | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 366 CTTTCAACACCATGCGGTTCATCAAACAAAGGAATCAATAAGAAAGCTCTTAGAATGTTC 425
Query 356 CCAGTTGTGAGTTACTCACCAGAGATGAACCTGCCGGGGCTTGGCGAAGAGTGTGTCATT 415
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 426 CCAGTTGTGAGTTACTCACCTGAGATGAACTTGCCGGGGCTTGGCGAAGAGTGTGTCATT 485
Query 416 TGTTTGTCCGATTTTGTTTCTGGTGAACAGCTCAGGCTGCTCCCCAAGTGCAACCACGGA 475
|||||||| ||||||||||| ||||||||| | ||| |||| || |||||| |||| ||
Sbjct 486 TGTTTGTCAGATTTTGTTTCCGGTGAACAGATTAGGATGCTACCTAAGTGCCACCATGGG 545
Query 476 TTCCATGTTCGTTGCATAGACAAGTGGCTTCAACAGCATTTGACATGTCCGAAATGCAGA 535
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 546 TTCCATGTTCGTTGCATAGACAAGTGGCTTCAACAACATTTGACTTGTCCAAAATGCAGA 605
Query 536 CACTGTCTGGTCGAGACATGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGATTCA-GT 594
||||||||||| ||||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct 606 CACTGTCTGGTTGAGACATGCCAAAAGATCTTAGGTGACTTCAGTCAAGCTGAT-CAAGT 664
Query 595 TGCGGCAGA-ACCAACAGAAATCGTGATTGTCATGATTGCTCCTCTAGAACCTGAAGGAA 653
|| ||| | |||||||| | ||| ||||||| |||||||||||| |||||||||||||
Sbjct 665 GGCAGCA-ACACCAACAGCGAGCGTAATTGTCAGGATTGCTCCTCTGGAACCTGAAGGAA 723
Query 654 GAGTAAACACTTGTA-GAGAAATCAGCTAG 682
||||||||| || || |||||| |||||||
Sbjct 724 GAGTAAACATTT-TAAGAGAAAGCAGCTAG 752
> AT1G49210.1 | Symbols: | RING/U-box superfamily protein | chr1:18201889-18202764
FORWARD LENGTH=876
Length=876
Score = 867 bits (469), Expect = 0.0
Identities = 616/687 (90%), Gaps = 9/687 (1%)
Strand=Plus/Plus
Query 1 AAAA-ATGTCTGCATATGAGTTACCTTCTTCAGCTCAAGCCTTCCAAGAGCAACTCAC-T 58
|||| ||||||||| | ||||||||| ||||||||||| |||| ||||| ||| || | |
Sbjct 101 AAAACATGTCTGCAAACGAGTTACCTGCTTCAGCTCAATCCTTGCAAGAACAATTC-CTT 159
Query 59 GGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCGTTTGACCACAACACTCAACGA 118
||| |||||||| |||||||||| ||||||||| |||| |||||||||||| ||| |||
Sbjct 160 GGCAGTTTTGTCACTAGAAAGCTTCTTCTGCACGACCCATTTGACCACAACTCTCTTCGA 219
Query 119 G-ACTTTGCGGTTTCACCATCTCCTCTCATTACCCATGTGAACAACCTCAGGGGGAATGT 177
| | ||||||||| |||||||||||||||| || |||| ||||||||||| ||||||||
Sbjct 220 GTA-TTTGCGGTTGCACCATCTCCTCTCATAACACATGAGAACAACCTCAAAGGGAATGT 278
Query 178 TCTGATGCTTCTCTCAATCCTCATTTGTGGCATCATCTGCTGCCTCGGGCTGCATTACAT 237
|||||||||||||||| | ||||| |||||||||||||| ||||| ||| | ||||||||
Sbjct 279 TCTGATGCTTCTCTCAGTTCTCATCTGTGGCATCATCTGTTGCCTTGGGTTACATTACAT 338
Query 238 CATTCGTTGTGCATCCAGACGTTCTTCACGTTTCATGATCTCTGAGCCTATA-CCTAGTC 296
|||||| ||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 339 CATTCGCTGTGCATTCAGACGTTCTTCACGTTTCATGATCTCTGAGCCTATATCC-AGTC 397
Query 297 ATCCAACAACACGGGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGAATGTTCC 356
| ||||| |||| |||||||||||||||||||||||||||||||||| || |||||||
Sbjct 398 TTTCAACACCACGAAGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTGAGGATGTTCC 457
Query 357 CAGTTGTGAGTTACTCACCAGAGATGAACCTGCCGGGGCTTGGCGAAGAGTGTGTCATTT 416
|||| ||||||||||||| ||||||||| |||| ||| |||| ||||||||||||||||
Sbjct 458 CAGTCGTGAGTTACTCACGTGAGATGAACTTGCCCGGGATTGGTGAAGAGTGTGTCATTT 517
Query 417 GTTTGTCCGATTTTGTTTCTGGTGAACAGCTCAGGCTGCTCCCCAAGTGCAACCACGGAT 476
||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 518 GTTTGTCGGATTTTGTTTCTGGTGAACAGCTCAGGCTGCTCCCCAAGTGCAATCATGGGT 577
Query 477 TCCATGTTCGTTGCATAGACAAGTGGCTTCAACAGCATTTGACATGTCCGAAATGCAGAC 536
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 578 TCCATGTTCGTTGCATAGACAAGTGGCTTCAACATCATTTGACATGTCCGAAATGCAGAC 637
Query 537 ACTGTCTGGTCGAGACATGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGATTCAGTTG 596
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 638 ACTGTCTGGTTGAGACATGTCAAAAGATATTAGGTGACTTCAGTCAAGCTGATTCAATGG 697
Query 597 CGGCAGA-ACCAACAGAAATCGTGATTGTCATGATTGCTCCTCTAGAACCTGAAGGAAGA 655
| || | ||||||||| | ||| ||||||| ||||| ||||||||||||||||||||||
Sbjct 698 CATCA-ACACCAACAGAGAGCGTAATTGTCAGGATTGATCCTCTAGAACCTGAAGGAAGA 756
Query 656 GTAAACACTTGTAGAGAAATCAGCTAG 682
|||||||||| |||||||| |||||||
Sbjct 757 GTAAACACTTTTAGAGAAAGCAGCTAG 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33003834579
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5