BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474066 Length=477 Score E Sequences producing significant alignments: (Bits) Value AT1G49245.1 | Symbols: | Prefoldin chaperone subunit family pr... 490 5e-138 > AT1G49245.1 | Symbols: | Prefoldin chaperone subunit family protein | chr1:18218750-18219261 FORWARD LENGTH=512 Length=512 Score = 490 bits (265), Expect = 5e-138 Identities = 345/382 (90%), Gaps = 12/382 (3%) Strand=Plus/Plus Query 101 CTTCGTCGGGTCGCGAATTCGAGCTTGAGAAGGAGATAAAGAGGCAAGAGGTTTCGTTAG 160 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 125 CTTCGTCGGATCGCGAATTCGAGCTTGAGAAAGAGATAAAGAGGCAAGAGGTTTCGTTAG 184 Query 161 ATGAATTGAGCAGTCTCTCTTCTTCTCGAAGTGTCTACCAGAAAAACGGCAACCTCTTCT 220 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 185 ATGAATTGAGCAGTCTCTCTTCTTCTCGAAGTATCTACCAGAAAAACGGTAACCTCTTCT 244 Query 221 TCCTCACATCTA-CCGAGAAAGCGAAAACCTCTGCGCAGAAACAACTTGACTACGCTAAA 279 |||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 245 TCCTCACATC-AGCCGAGAAAGCGAAAATCTCTGCGCAGAAACAACTTGATTACGCTAAA 303 Query 280 TCTGAAATCAACAAGATTCGTTCGCAGACATAAACAATAAAGCTCTGTAGTTGCTGGAGA 339 |||||||||||||||||||||||||||| ||||||||| || | | ||||||||| ||| Sbjct 304 TCTGAAATCAACAAGATTCGTTCGCAGAAATAAACAATGGAGATTTCTAGTTGCTGAAGA 363 Query 340 TCCAAAGAACTTCtttt--ttttttttATGATTT-TGT-TGATATAATTGATGCTATATC 395 ||||| || || || ||||||||||||| | | | |||| || |||||||||||| Sbjct 364 TCCAAC-AAGG-CTGTTCCTTTTTTTTATGATGTATCTCTGAT-TA-TTGATGCTATATA 419 Query 396 AATTTTCATTAGTTCGTGTATGATCTTTGAATTGTCTTGGAATTGGTTGCAAATTACTTG 455 ||||||||||||||||||||||||||| ||| | ||||||||||| || |||||||||| Sbjct 420 AATTTTCATTAGTTCGTGTATGATCTT-GAACTATCTTGGAATTGCTTT-AAATTACTTG 477 Query 456 ATTTTGATATGATAGTCAGCTA 477 |||||||||||||| ||||||| Sbjct 478 ATTTTGATATGATAATCAGCTA 499 Score = 97.1 bits (52), Expect = 1e-19 Identities = 68/75 (91%), Gaps = 4/75 (5%) Strand=Plus/Plus Query 1 GTTTCCGATGTGGGACTCTGGCTTTTACCAATTTTTCCTTTTTAAT--ATTCCTTGTAGA 58 |||||||||||||||||||||||||||||||||||| ||||||||| ||| || |||| Sbjct 1 GTTTCCGATGTGGGACTCTGGCTTTTACCAATTTTTTCTTTTTAATTTATTT-TTCTAGA 59 Query 59 AAACCTAAGAAAATT 73 || |||||||||||| Sbjct 60 AA-CCTAAGAAAATT 73 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22705834444 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5