BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474072
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49320.1 | Symbols: ATUSPL1, USPL1 | unknown seed protein li... 1539 0.0
> AT1G49320.1 | Symbols: ATUSPL1, USPL1 | unknown seed protein
like 1 | chr1:18246305-18247992 FORWARD LENGTH=1154
Length=1154
Score = 1539 bits (833), Expect = 0.0
Identities = 1021/1104 (92%), Gaps = 43/1104 (4%)
Strand=Plus/Plus
Query 1 ATTGAGATCTAAGATCACTT------TTa-aaaaaaTATTCTGCTCTCCttt-t-t-t-t 49
|||||||||||||||||||| ||| |||||||||| |||||| |||| | | | |
Sbjct 1 ATTGAGATCTAAGATCACTTGAACACTTATAAAAAATATTTTGCTCTTCTTTCTATATAT 60
Query 50 ATAAACAAAAAGTCAAAATATCaagaagaggaagaagaagaagaaACTCA--TT-T---- 102
|| | |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 61 TTATATAAAAAGTCAAAATATCAAGAAGAGGAAGAAGAAGAAGAAACTCATTTTCTCCGC 120
Query 103 --------T-C--T--ATGGCTTCTACTTTTAGGCTCTCTATTAGCTTCCTCACTCTCCT 149
| | | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 AGAGAAAATACAATCCATGGCTTCTACTTTTAGGCTCTCTATTAGCTTCCTCACTCTCAT 180
Query 150 CCTCTTCTCTCTGTGGGTAGTGGAGGCACACACGTCAAGAAAGCTGATATCAATCAAGGA 209
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 181 CCTCTTCTCTCTGTGGGTAGTGGAGGCACACACGTCTAGAAAGTTGATATCAATCAAGGA 240
Query 210 AAACGAAGGTCAAGATATTAGTCATTTGCTCAAAGATGGTGAATTCGATGATCCTTCATT 269
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 241 AAAAGAAGGTCAAGATATTAGTCATTTGCTCAAAGATGGTGAATTTGATGACCCTTCGTT 300
Query 270 GTACATGTATTTCACACCCAATGATCTCAAACTAGGAACCAAATTGCTGATTTACTTCTA 329
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTACATGTATTTCACACTCAATGATCTCAAACTAGGAACCAAATTGCTGATTTACTTCTA 360
Query 330 CAAAAACGATCTTCAAAAGCTTCCTCCACTTCTCACAAGACAACAAGCTGATCTCATTCC 389
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 CAAAAACGATCTTCAAAAGCTTCCTCCACTTCTCACAAGACAACAAGCCGATCTCATTCC 420
Query 390 TTTCACTAAGTCAAAGCTTGACTTCCTTCTCGACCACTTCTCGATCACCAAAGACTCTCC 449
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 TTTCACTAAGTCAAAGCTTGACTTCCTTCTCGACCACTTCTCTATCACCAAAGACTCTCC 480
Query 450 TCAAGGGAAAGCCATAAAGGAGACTCTGGGACATTGTGATGCTAAAGCTATTGAAGGAGA 509
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 TCAAGGGAAAGCCATAAAGGAGACTTTGGGACATTGTGATGCTAAAGCTATTGAAGGAGA 540
Query 510 GCATAAGTTTTGCGGGACTTCTTTGGAGTCTTTGATCGATCTCGTGAAGAAAACAATGGG 569
|||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 541 GCATAAGTTTTGTGGAACTTCTTTGGAGTCATTGATCGATCTTGTGAAGAAAACAATGGG 600
Query 570 GTATAATGTTGACCTCAAGGTCATGACAACTAGAGTAATGGCACCGGCCCAAAATTCTAT 629
||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| ||
Sbjct 601 GTATAATGTTGACCTCAAGGTCATGACGACTAAAGTAATGGTACCGGCCCAAAATTCGAT 660
Query 630 AAGCTACGCTTTGCATAACTATACATTCGTCGAGGCTCCTAAGGAACTTGTCGGTATTAA 689
||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||
Sbjct 661 AAGCTACGCTTTGCATAACTACACATTCGTCGAGGCTCCAAAGGAACTTGTTGGGATTAA 720
Query 690 GATGTTGGGATGCCATAGAATG-CTATACCCTTATGCTGTTTACTATTGCCACGGACATA 748
|||||||||||| || |||||| || |||||||||||||||||||||||||| |||||||
Sbjct 721 GATGTTGGGATGTCACAGAATGCCT-TACCCTTATGCTGTTTACTATTGCCATGGACATA 779
Query 749 AAGGTGGAAGCAGAGTCTTTGAAGTTAATCTGGTGACGGATGATGGGAGACAACGGGTTG 808
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 780 AAGGTGGAAGTAGAGTCTTTGAAGTTAATTTGGTGACGGATGATGGGAGACAACGGGTAG 839
Query 809 TAGGACCCGCTGTCTGCCACATGGACACGTCCACGTGGGATGCGGATCATGTAGCTTTTA 868
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 840 TAGGACCCGCTGTCTGCCACATGGACACATCCACGTGGGACGCGGATCATGTAGCTTTTA 899
Query 869 AGGTGTTGAAGATGGAGCCGAGGTCAGCACCGGTTTGCCATTTCTTCCCTCTTGATAACA 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGGTGTTGAAGATGGAGCCGAGGTCAGCACCGGTTTGCCATTTCTTCCCTCTTGATAACA 959
Query 929 TTGTGTGGGTAACAAAGTAAGAAAATAGACTTAGCTCTATATAATGTGAGTATGTGTT-G 987
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 960 TTGTGTGGGTAACAAAGTAAGAAAATAGACGTAGCTCTATATAATGTGAGTATGTGTTTG 1019
Query 988 TAATAACTATGGTTTGAAAGATaaaaaaaaaggaaaaaaaaaaaaaaGAAAGACAGCCTT 1047
|||||||||||||||||||| ||||| | |||| |||| |||| | |||||||||
Sbjct 1020 TAATAACTATGGTTTGAAAGG-AAAAA----G-AAAAGAAAAGAAAA-A--GACAGCCTT 1070
Query 1048 AATGTTGGCTTTGGTATTGCCTCT 1071
||||||||||||||||||||||||
Sbjct 1071 AATGTTGGCTTTGGTATTGCCTCT 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5