BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474075
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49350.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1744 0.0
> AT1G49350.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr1:18264971-18267270 FORWARD LENGTH=1472
Length=1472
Score = 1744 bits (944), Expect = 0.0
Identities = 1129/1218 (93%), Gaps = 13/1218 (1%)
Strand=Plus/Plus
Query 1 ACAGATCTATCAGTTTAGTGACTACAGTGAGGATTTAAACTGAGAAACGAAGAAAGTCTG 60
||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||
Sbjct 27 ACAGATCTATCAGTTTACTGACTACAGAGAGGATTTGAACTGAGAATCGAAGAAAGTCT- 85
Query 61 C-GAGGGGTTCATCAATGGAACCGGTGATAATCGGTGCGCTGATTTTGGATGTTCACGCC 119
| || ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 86 CTGA-GGGTTCATCTATGGAACCGGTTATAATCGGTGCGCTGATTTTGGATGTTCACGCC 144
Query 120 AAGCCTT-GTACCGCACCAATCTCAGGAACCACTGTCCCTGGCCAGGTCTTGTTTGCGCC 178
||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 145 AAGCCTTCG-ACCACACCAATCTCAGGAACCACTGTCCCTGGCCAGGTCTTATTTGCGCC 203
Query 179 CGGTGGTGTAGCAAGAAATGTAGCTGAGTGCATCTTCAAGCTTGGTATTAAACCTTTCAT 238
|||||||||||||||||||||||||| ||||||||||||||||| |||| |||||| ||
Sbjct 204 GGGTGGTGTAGCAAGAAATGTAGCTGATTGCATCTTCAAGCTTGGAATTACACCTTTTAT 263
Query 239 GATTGGTACTTT-GGGCCTTGATGGTCCAGCCAATGTATTATTGAAGGAGTGGAAGCTCT 297
|||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 264 GATTGGTACTTTAGGG-CTTGATGGTCCAGCCAATGTTTTATTGAAAGAGTGGAAGCTCT 322
Query 298 CCATGACAGGAATCTTGAGACGTGAAGACATTAGTACTCCCATTGTGTCCCTTGTATATG 357
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CTATGAAAGGAATCTTGAGACGTGAAGACATTAGTACTCCCATTGTGTCCCTTGTATATG 382
Query 358 ACATTAATGGAGAAGTTGCGGCCGGTGTTGCTGGTGTTGATGCAGTTGAAAAGTTTCTGA 417
||| ||||||||||||||| || ||||||||||| || ||||| |||||||| ||| | |
Sbjct 383 ACACTAATGGAGAAGTTGCCGCTGGTGTTGCTGGCGTGGATGCCGTTGAAAATTTTTTAA 442
Query 418 CACCTGAGTGGATCCAGCGGTTTGAATACAACATAAGCTCTGCTCCTCTTCTTATGGTAG 477
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 443 CACCTGAGTGGATCCAGCGGTTTGAATACAACATAAGCTCTGCTCGTCTTCTTATGGTAG 502
Query 478 ATGCAAATCTTAGCACTCTTGCTTTGGAAGCTTCTTGCAAATTGGCTGCAGAGTTCAATG 537
|||||||||||||| |||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 503 ATGCAAATCTTAGCTCTCTTGCTTTGGAAGCATCTTGCAAATTGGCTGCAGAGTCCAGTG 562
Query 538 TTCCTGTATGGTTTGAGCCCGTGTCAGTCACAAAGTCGCAGAGGATCGCCTCAATTGCCA 597
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 563 TTCCTGTATGGTTTGAGCCAGTGTCAGTCACTAAGTCACAGAGGATCGCCTCAATTGCCA 622
Query 598 AGTATGTAACAATAGTGTCCCCAAACCAAGACGAACTTATAACCCTGGCAAACGCTCTCT 657
||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 623 AGTATGTAACAATAGTGTCCCCAAACCAAGACGAACTCATAGCAATGGCAAACGCTCTCT 682
Query 658 GCGCCAAGAAAAT-TTTCCACCCCTTTAGATTAGAAGAAAATAATCTTTCTATTGAAGAT 716
|||||||||| | |||| | |||||||||| ||| |||||||| |||||||||||||||
Sbjct 683 GCGCCAAGAATTTGTTTC-ATCCCTTTAGATCAGACGAAAATAAGCTTTCTATTGAAGAT 741
Query 717 ATGTTC--TGCACGCTAAAGCCAGCCATTTTGGTTCTCCTTGACAATGATGTTAAAGTAG 774
|||||| ||||| |||||||||| ||||||||||||||| | |||| |||||||||||
Sbjct 742 ATGTTCCGTGCAC--TAAAGCCAGCTATTTTGGTTCTCCTTAAAAATGGTGTTAAAGTAG 799
Query 775 TTATCGTAACTCTTGGTTCCAATGGAGCTCTCCTCTGCTCCAAGGGAAACCCGAAAATGG 834
||||||||||||| || ||||||||||||||||| || ||||||||||||||||||| ||
Sbjct 800 TTATCGTAACTCTCGGCTCCAATGGAGCTCTCCTATGTTCCAAGGGAAACCCGAAAAAGG 859
Query 835 CTCTGAACTTAAACAGAAAGTTTCCAAGAAGTGGAGAGATCTTCAAAAGAGTACAATCTG 894
|||||||| || |||||||||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 860 CTCTGAACATAGACAGAAAGTTTCTAAGAAGTGGAGAGGTCTTCAAAAGAGTACAGTCTG 919
Query 895 TATGTTCACCAAACAGGTTTTCTGAATTAGGATCGAATCGCAGCCCGAGTCTTTTTGCAA 954
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 920 TATGTTCACCAAACCGGTTTTCTGAATTGGGATCGAATCGCAGCCCGAGTCTTTTCGCAA 979
Query 955 TGCATTTACCAACCATCCCAGCCAAAGTCAAGAAGCTGACTGGTGCAGGTGATTGCCTGG 1014
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 980 TGCATTTCCCAACCATCCCAGCCAAAGTCAAGAAGCTGACTGGTGCAGGTGATTGTCTGG 1039
Query 1015 TAGGCGGCACAGTCGCATCGCTAAGCGGTGGGTTAGATCTAATCCAGAGTTTAGCAGTTG 1074
||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1040 TAGGCGGGACAGTTGCATCGCTAAGCGATGGGTTAGATCTAATCCAGAGTTTAGCGGTTG 1099
Query 1075 GCATTGCCTCGGCTAAAGCAGCGGTTGAGTCAGATGATAATGTGCCTCCTGACTTCAAGT 1134
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1100 GCATTGCGTCGGCGAAAGCAGCGGTTGAGTCAGATGATAATGTGCCTCCTGAGTTCAAGT 1159
Query 1135 TGGATCTTATTTATGATGACGCAGAGGTAGTATACAATGGCGCTAAGATGTTGATGGTTC 1194
|||||||||| | || ||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 1160 TGGATCTTATATCTGGTGATGCAGAGTTGGTATACAATGGCGCTAAGATGTTGATGGTTC 1219
Query 1195 ACCAGTCGATGCTATGAA 1212
||||||||||||||||||
Sbjct 1220 ACCAGTCGATGCTATGAA 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5