BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474078
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49400.1 | Symbols: emb1129 | Nucleic acid-binding, OB-fold-... 889 0.0
> AT1G49400.1 | Symbols: emb1129 | Nucleic acid-binding, OB-fold-like
protein | chr1:18283032-18284202 FORWARD LENGTH=839
Length=839
Score = 889 bits (481), Expect = 0.0
Identities = 628/693 (91%), Gaps = 33/693 (5%)
Strand=Plus/Plus
Query 86 aaaaaaaaaaTGAAGCCAGTAATAGGCACAGTGGTATCGAACAAGATGCAGAAATCGGTA 145
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 116 AAAAAAAATATGAAGCCAGTGATAGGCACAGTGGTATCGAACAAGATGCAAAAATCTGTA 175
Query 146 GTCGTCGCCGTCGATAGACTCTTCCACAACAAACTCTACAATCGCTACGT-AAAGCGCAC 204
|| |||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||
Sbjct 176 GTGGTCGCCGTCGATAGACTCTTCCACAACAAAATCTACAATCGCTACGTCAAA-CGAAC 234
Query 205 TTCCAAATTCATGGCTCACGACGACAAAGACGCCTGCAACATCGGCGATCGAGTGAAGTT 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TTCCAAATTCATGGCTCACGACGACAAAGACGCCTGCAACATCGGCGATCGAGTGAAGTT 294
Query 265 AGATCCATCAAGGCCATTGAGCAAGAATAAGCATTGGGTTGTTGCTGAAATCATCAAAAA 324
||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 295 AGATCCATCAAGGCCTTTGAGCAAGAATAAGCATTGGATTGTTGCAGAAATCATCAAAAA 354
Query 325 AGCTCGAATCTATTCTCCGGAGGCGgctgctgctgctgttgt-tgcttcttcttctgctt 383
||||||||| |||||||| | || ||||||||||||||| | ||||||| |||||||||
Sbjct 355 AGCTCGAATTTATTCTCCTAAAGCTGCTGCTGCTGCTGTT-TCTGCTTCTGCTTCTGCTT 413
Query 384 cctctgcctccattgctgactcttctgctcAGTCTCAGATTCCTCCATCATCTACTTCTT 443
|||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CCTCAGCCTCCACTACTGACTCTTCTGCTCAGTCTCAGATTCCTCCATCATCTACTTCTT 473
Query 444 AAGTTGTTTTAAGAGAAACGTTGCATAGAGAAGCGAAAACATGTAGCTAGGAGTTGTTAC 503
|||||||||||||||||||||||||||| ||||||| || | || |||||||||||||||
Sbjct 474 AAGTTGTTTTAAGAGAAACGTTGCATAGCGAAGCGAGAA-A-GTTGCTAGGAGTTGTTAC 531
Query 504 GATGATCATATTGCATCGAAGTTTATGCTTTTGGATCATGTCTGTGATATTTTGATTTCC 563
|||| ||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 532 TATGAGCATATTGCATCGAAG------CTTTTGGATCATGTCTGTGATATTT-GATTTCC 584
Query 564 TGAGATGATTATGAGTTATATGATGGGGA-TAGATTCTCTGGTGAAAGTTGATGAATAAA 622
||||||||| |||||||||||||||| | |||||| |||||||||||| |||||||||
Sbjct 585 TGAGATGATAATGAGTTATATGATGGT-ACTAGATTATCTGGTGAAAGTAGATGAATAA- 642
Query 623 CACCTCCTGTTAAGAAACTCTGTCTTCTTATGTTATTTTGGCAAATCATCAGTGTATTGC 682
||| | ||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 643 CACAT---GTTAAGATACTCTGTCTTCTTATGTTATTTTGGCAAATCATCAGTGCATTGC 699
Query 683 ACTTT-AAGCAGAAGTGTGAGATAGTGATGAGTTGTTATT---TT-G-------GG-TAT 729
|||| |||||||||||||||||||||||||||||||||| || | || |||
Sbjct 700 -CTTTTAAGCAGAAGTGTGAGATAGTGATGAGTTGTTATTACATTCGTTATTTTGGGTAT 758
Query 730 GGAACAATGAGTGAAAATGCATCTTTGGCTCTA 762
||||||||||||||||||| |||||||||||||
Sbjct 759 GGAACAATGAGTGAAAATGTATCTTTGGCTCTA 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5