BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474081
Length=2291
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49430.1 | Symbols: LACS2, LRD2 | long-chain acyl-CoA synthe... 3611 0.0
> AT1G49430.1 | Symbols: LACS2, LRD2 | long-chain acyl-CoA synthetase
2 | chr1:18291043-18295825 FORWARD LENGTH=2327
Length=2327
Score = 3611 bits (1955), Expect = 0.0
Identities = 2207/2324 (95%), Gaps = 35/2324 (2%)
Strand=Plus/Plus
Query 1 AGACTTTTATTAACCTTCAAAATATTATTTATTTTTCCAATCTTCAAATAGAGACACTCT 60
|||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||
Sbjct 6 AGACTTTTATTAACCTTCAAAACATTATTTATTATTCCAATCTTCAAAGAGAGACACTCA 65
Query 61 CACTCCTTATCTTTC-TCA-TCCTCCATCCGA-ATTTCTTCTTCATTAAAGTGTTAATCC 117
||||||||||| ||| ||| |||||||||| | |||||||||| ||||||||| |||
Sbjct 66 CACTCCTTATC-TTCTTCATTCCTCCATCCTATTTTTCTTCTTCGCCAAAGTGTTATTCC 124
Query 118 TCAA---T-GGT-TT---C--A-G-C----G--GTGGATCATGTGTTGTTGGTGGAAGAA 159
|||| | | || | | | | | | |||| ||||||||||||||||||||
Sbjct 125 TCAACTTTATATATTACACAAATGTCTTTAGCCGCGGATAATGTGTTGTTGGTGGAAGAA 184
Query 160 GGAAGGCCAGCCACGGCGGAACATCCATCGGCCGGACCGGTTTATCGATGTAAATACGCT 219
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GGAAGGCCAGCCACAGCGGAACATCCATCGGCCGGACCGGTTTATCGATGTAAATACGCT 244
Query 220 AAAGATGGCCTCCTCGATCTTCCTACCGATATTGATTCTCCTTGGCAGTTCTTTAGTGAG 279
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 245 AAAGATGGCCTCCTCGATCTCCCTACCGATATTGATTCTCCTTGGCAGTTCTTTAGTGAG 304
Query 280 GCTGTGAAGAAATATCCGAATGAGCAAATGTTGGGCCGACGCTTAACGACTGATTCTAAG 339
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 305 GCTGTGAAGAAATATCCGAATGAGCAAATGTTGGGCCAACGCGTAACGACTGATTCTAAG 364
Query 340 GTCGGTCCATACACGTGGATCACATATAAGGAAGCCCACGATGCTGCAATTCGGATTGGA 399
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 365 GTCGGTCCATACACGTGGATCACATATAAGGAAGCGCACGACGCTGCAATTCGGATTGGA 424
Query 400 TCAGCAATCAGAAGCCGTGGCGTTGATCCGGGACATTGTTGTGGTATTTACGGATCTAAT 459
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 425 TCAGCAATCAGAAGCCGAGGCGTTGATCCGGGACACTGTTGTGGTATTTACGGAGCTAAT 484
Query 460 TGTCCAGAATGGATTATTGCAATGGAGGCCTGCATGAGCCAAGGGATAACATACGTGCCT 519
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 485 TGTCCAGAATGGATTATTGCAATGGAGGCCTGCATGAGCCAAGGGATCACCTACGTGCCT 544
Query 520 CTATACGATACTTTAGGCGTAAACGCAGTTGAATTCATCATCAATCATGCCGAGGTTTCG 579
||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 545 CTATACGATTCTTTAGGCGTAAACGCAGTTGAATTCATCATCAACCACGCCGAGGTTTCG 604
Query 580 CTAGTATTTGTTCAAGAGAAGACAGTTTCATCCATCTTATCGTGCCAAAAGGGATGTTCT 639
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 605 CTAGTATTTGTTCAAGAGAAGACAGTTTCATCGATCTTATCGTGCCAAAAGGGATGTTCT 664
Query 640 TCAAATTTGAAGACTATTGTGAGCTTCGGGGAAGTCTCGAGTACACAAAAGGAAGAAGCT 699
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TCGAATTTGAAGACTATTGTGAGCTTCGGGGAAGTCTCGAGTACACAAAAGGAAGAAGCT 724
Query 700 AAGAACCAATGTGTTTCTTTATTTTCATGGAATGAGTTCTCACTAATGGGAAACTCAGAT 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 725 AAGAACCAATGTGTTTCTTTATTTTCATGGAATGAGTTCTCACTAATGGGAAACTTAGAT 784
Query 760 GAGACAAACCTACCCCGTAAGCGAAAGACAGACATTTGCACAATAATGTACACAAGCGGG 819
||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 785 GAGGCAAATCTACCTCGTAAGCGAAAGACAGACATCTGCACAATAATGTACACAAGCGGG 844
Query 820 ACGACTGGAGAACCCAAAGGTGTAATCTTAAACAACGCAGCAATTTCGGTCCAAGTTTTA 879
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 845 ACGACTGGAGAACCCAAAGGTGTAATCTTAAACAACGCAGCAATTTCGGTCCAGGTTTTA 904
Query 880 TCCATTGACAAAATGCTTGAAGTCACCGATCGATCGTGTGACACGAGCGATGTGTTCTTC 939
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 905 TCCATAGACAAAATGCTTGAAGTCACTGATCGATCGTGTGACACGAGCGATGTGTTCTTC 964
Query 940 TCGTACTTGCCATTAGCACATTGCTATGATCAAGTCATGGAGATTTACTTTTTATCTAGA 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TCGTACTTGCCATTAGCACATTGCTATGATCAAGTCATGGAGATTTACTTTTTATCTAGA 1024
Query 1000 GGCTCCTCTGTTGGATACTGGCGTGGCGACATTCGGTACCTGATGGATGACGTTCAAGCT 1059
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1025 GGCTCCTCTGTTGGATACTGGCGTGGCGACATTCGGTACCTGATGGATGATGTTCAAGCT 1084
Query 1060 CTGAAACCTACTGTGTTTTGCGGTGTTCCACGAGTTTACGACAAACTATATGCCGGTATA 1119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 CTTAAACCTACTGTGTTTTGCGGTGTTCCACGAGTTTACGACAAACTATATGCCGGTATA 1144
Query 1120 ATGCAAAAAATCTCAGCTAGTGGCTTGTTACGCAAGAAACTGTTCGATTTTGCTTATAAC 1179
||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1145 ATGCAAAAAATATCAGCTAGTGGCTTGATACGCAAGAAACTGTTTGATTTTGCTTATAAC 1204
Query 1180 TACAAATTGGGAAATATGAGAAAAGGATTCTCCCAGGAAGAAGCTTCTCCTCGTCTAGAC 1239
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1205 TACAAATTGGGAAATATGAGAAAAGGATTCTCTCAAGAAGAAGCTTCTCCTCGTCTAGAC 1264
Query 1240 AGACTTATGTTCGATAAGCTTAAAGAAGCACTAGGAGGAAGAGCTCATATGTTGTTATCA 1299
|||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct 1265 AGACTTATGTTCGATAAGATAAAAGAAGCATTAGGAGGAAGAGCTCATATGTTGTTATCA 1324
Query 1300 GGTGCAGCGCCTTTACCTCGTCATGTAGAGGAGTTCTTGAGAATCATTCCTGCCTCTAAT 1359
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 GGAGCAGCGCCTCTACCTCGTCATGTAGAGGAGTTCTTGAGAATCATTCCTGCCTCTAAT 1384
Query 1360 CTCTCTCAAGGTTATGGACTGACTGAGAGTTGTGGGGGAAGCTTCACGACCTTAGCGGGA 1419
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1385 CTCTCTCAAGGTTATGGATTGACTGAGAGTTGTGGGGGAAGCTTCACGACCTTAGCCGGA 1444
Query 1420 GTATTTTCTATGGTGGGGACAGTGGGTGTGCCAATGCCGACAGTGGAGGCAAGGTTAGTG 1479
|||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 1445 GTATTTTCTATGGTGGGGACAGTGGGTGTGCCAATGCCCACGGTGGAGGCAAGGCTAGTG 1504
Query 1480 TCCGTACCGGAGATGGGTTATGATGCCTTTTCTGCCGACGTGCCGAGAGGAGAGATTTGT 1539
|||||||| ||||||||||| || |||||||| || ||||||||||||||||||||||||
Sbjct 1505 TCCGTACCAGAGATGGGTTACGACGCCTTTTCCGCTGACGTGCCGAGAGGAGAGATTTGT 1564
Query 1540 CTTAGAGGAAATTCAATGTTTTCTGGTTACCATAAAAGACAAGATCTAACTGATCAAGTC 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 CTTAGAGGAAATTCAATGTTTTCTGGTTACCATAAAAGACAAGATCTAACTGATCAAGTC 1624
Query 1600 CTAATCGATGGATGGTTCCACACAGGAGATATTGGAGAATGGCAAGAAGATGGATCAATG 1659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 CTAATCGATGGATGGTTCCACACAGGAGATATTGGAGAATGGCAAGAAGATGGATCAATG 1684
Query 1660 AAGATCATAGATAGGAAGAAGAACATCTTCAAGCTGTCTCAAGGTGAGTATGTTGCTGTT 1719
|||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1685 AAGATCATCGATAGGAAGAAGAACATCTTCAAGTTGTCTCAAGGTGAATATGTTGCTGTT 1744
Query 1720 GAAAACCTCGAAAACACTTACTCAAGATGTCCCCTCATTGCTCAGATATGGGTCTATGGA 1779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 GAAAACCTCGAAAACACTTACTCAAGATGTCCCCTCATTGCTCAGATATGGGTCTATGGC 1804
Query 1780 AACAGCTTCGAGTCGTTTTTGGTAGGTGTGGTTGTACCTGATAGAAAGGCTATTGAAGAT 1839
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1805 AACAGCTTCGAGTCATTTTTGGTAGGTGTGGTTGTACCTGATAGAAAAGCTATTGAAGAT 1864
Query 1840 TGGGCTAAACTCAATAACCAATCTCCCAATGATTTTGAATCTCTATGTCAAAATCTCAAA 1899
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1865 TGGGCTAAACTCAATTACCAATCTCCCAATGATTTCGAATCTCTATGTCAAAATCTCAAA 1924
Query 1900 GCTCAAAAATACTTCTTGGATGAGCTTAACTCTACTGCAAAACAATATCAACTTAAAGGA 1959
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1925 GCTCAAAAATACTTCTTGGATGAGCTTAACTCTACCGCAAAGCAATATCAACTTAAAGGA 1984
Query 1960 TTTGAAATGTTAAAGGCTATTCATTTAGAACCAAACCCTTTTGACATTGAAAGAGATCTT 2019
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1985 TTTGAAATGTTAAAAGCTATTCATTTAGAACCAAACCCTTTTGATATTGAAAGAGATCTT 2044
Query 2020 ATTACTCCAACATTCAAGCTGAAAAGGCCACAGCTTCTCCAACATTACAAGGGCATAGTT 2079
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2045 ATTACTCCAACTTTCAAGCTGAAAAGGCCACAGCTCCTCCAACATTACAAGGGCATAGTT 2104
Query 2080 GACCAACTTTATTCAGAAGCCAAGAGGTCCATGGCATAGATA--------CCGATCGGCT 2131
|| ||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 2105 GATCAACTTTATTCAGAAGCAAAGAGGTCCATGGCATAGATAATTAGATACCGATCGGCT 2164
Query 2132 ATTCATTTTCTGATGCTATTTGGGTTTGTATGATGTGTTACAAAATTGTGTTCGGATCCT 2191
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2165 ATTCATTTTCTGATGCTATTTGGGTTTGTATGATATGTTACAAAATTGTGTTCGGATCCT 2224
Query 2192 CTCATCATGTGATTCTTGTGACACTTAATACATAGTTTGGAAACTATATAT-TA-T-T-A 2247
||||||||||||||||||| ||||| ||| |||||||||||||||||||| || | | |
Sbjct 2225 CTCATCATGTGATTCTTGTTACACTAAATTTATAGTTTGGAAACTATATATATACTATTA 2284
Query 2248 AGCAAAGTTTACTAAAGATTTTCTTGATACATTTTGATTTATCT 2291
||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 2285 AGCAACGTTTACTAAAGATTT-CTTGATACATTTTGATTTATCT 2327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113704234425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5