BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474088 Length=1130 Score E Sequences producing significant alignments: (Bits) Value AT1G49510.1 | Symbols: emb1273 | embryo defective 1273 | chr1:1... 1434 0.0 > AT1G49510.1 | Symbols: emb1273 | embryo defective 1273 | chr1:18326870-18328610 FORWARD LENGTH=1215 Length=1215 Score = 1434 bits (776), Expect = 0.0 Identities = 953/1035 (92%), Gaps = 25/1035 (2%) Strand=Plus/Plus Query 93 AAATGGCGATGTCTCATCTC-TTC-CT-TTCTTCACCTCGACCTTCACTGGCCCTGCGAC 149 |||||||||||||||||||| ||| | |||||| |||| | |||||||||| ||||||| Sbjct 155 AAATGGCGATGTCTCATCTCTTTCTTTCTTCTTCGCCTCAATCTTCACTGGCTCTGCGAC 214 Query 150 TTCACTCGACTACCCAGTTCACGTTGAG-----CT--G--CAATAAAGATTGTACCTTTA 200 |||||||||| ||||||||||||||||| || | ||||||||||||| ||||| Sbjct 215 TTCACTCGACGACCCAGTTCACGTTGAGCTACTCTAAGAACAATAAAGATTGTTCCTTTC 274 Query 201 AGTGTGCAAATGAAGCTGAAGTATCAAAGAGATCATTCCTCCTCTGTCGTGCAATTCATA 260 || |||||||||||||| |||||||||||||||| | | ||||||||||||||||||| Sbjct 275 AGAGTGCAAATGAAGCTAAAGTATCAAAGAGATC-GT--TGCTCTGTCGTGCAATTCATA 331 Query 261 TGGAATCTGGACATTCAGGGGAACAACCAAAGAAGCTTAATTTCGATAATCTGTTGAGGA 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 332 TGGAATCTGGACATTCAGGGGAACAACCAAAGAAGCTTAATTTCGATAATCTGTTGAGGA 391 Query 321 AAACTAAACATGTTTGGGATAATTCTCCACAACCGGTCAAGGAATTCCCTTGGAATAGAG 380 ||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| Sbjct 392 GAACCAAACATGTTTGGGATAATTCTCCACAGCCGGTTAAGGAATTTCCTTGGAATAGAG 451 Query 381 CATTTGAAAACTTTATACAGCTTGTTCTTGATCTCGCTATATCAGTCGTTAAGTTCTTGT 440 |||| | |||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 452 CATTCGGAAACTTCATACAGCTCGTTCTTGATCTCGCTATATCAGTCGTTAAGTTCTTGT 511 Query 441 TTGTTCCTATATTGGCGGTTTCTTCCATCAGTGAGATGTCTTATTGTGCACATGAGAGGA 500 | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 512 TCGTTCCTATATTGGCGGTTTCTTCCATTAGTGAGATGTCTTATTGTGCTCATGAGAGGA 571 Query 501 AACTTGCTTTAGTCCCGTTTCCGTTAGTCATCGGTGTGGTTGTTGCTGGCATTCTACAAG 560 |||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||||||||| Sbjct 572 AACTTGCTTTAGTCCCATTTCCATTAGTCATCGGTATGGTTGTCGCTGGCGTTCTACAAG 631 Query 561 AAACCGCGTTGAAGATCTCTCCTCGTCTTAAGGAAGCGGAAGTACCGTGGCATTTGATAG 620 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 632 AAACCGCTTTGAAGATCTCGCCTCGTCTTAAGGAAGCGGAAGTACCGTGGCATTTGATAG 691 Query 621 CTATGATGATGTTCTTCACTCTGATTAAGCTTCCTGGACCGTACTATCCATATTGGGGAC 680 |||||||||||||||||||||||||||||||||||||||| || || || |||||||| | Sbjct 692 CTATGATGATGTTCTTCACTCTGATTAAGCTTCCTGGACCATATTACCCGTATTGGGGGC 751 Query 681 GTTTATTTGTTCCACATTTTGCAAATGGAGTATTGTTTAGAGCACTTTGGTCCATGtttt 740 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 752 GTTTATTAGTTCCACATTTTGCAAATGGAGTATTACTTAGAGCACTTTGGTCCATGTTCT 811 Query 741 tttGGTATAAGAAGACTAGAAACACATCAGGAAATCCTCTGCAGAATCCCAGTTTGGAAA 800 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 812 TTTGGTATAAGAAGACTAGAAACACATCAGGAAATCCTCTGCAGAATCACAGTTTGGAAA 871 Query 801 CAAAATGAGCATCTTCATCTAAAGG--GGTTGTTTTTTAGGTGCCAACTGGTCA-TTATG 857 || |||||||||||||||| ||||| ||| ||||| || |||||| |||||| || || Sbjct 872 CAGAATGAGCATCTTCATCAAAAGGCTGGT-GTTTTAAAG-TGCCAAGTGGTCACTT-TG 928 Query 858 ATTAGTTTCGGGGATTATCTGGAACCCTCGCGGATTAGTGTTCGAGCATAGATAGGAGCT 917 |||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| Sbjct 929 ATTAGTTTCGGGGATTATCTGGAACC-TCGTGGAGTAGTGTTCGAGCATAGATAGGAGCT 987 Query 918 TTCTTCTTAttttttttCTCTCTTCAATCTCAGAGAAGTTGAGGTCAATGAGTTAACAAC 977 |||||||| || |||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 988 TTCTTCTTCTTCTTTT-CTCTCTTCAATCTCAGAGAAGTTGAGGTTAATGAGTTAACAAC 1046 Query 978 ATCTTTTCGGCCATAGAATTGTTTTGTTTTGTGTTC-CTTCTTTGGAAGATTGTCACAGT 1036 ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||| |||| Sbjct 1047 ATCTTTTAGGCCATAGAATTGTTTTGTTTTGTGTTCTCTTCTTTGGAAAATTGTCTCAGT 1106 Query 1037 TCTTGTGAAAACCGCTGTTCTTTGGGTATGTATTTGTATCTTGAGTTTTTGTTTTTGGTC 1096 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1107 TCTTGTGAAAACCGCTATTCTTTGGATATGTATTTGTATCTTGAGTTTTTGTTTTTGGTC 1166 Query 1097 TTGACAAAATTTTAT 1111 ||||||||||||| Sbjct 1167 A-GACAAAATTTTAT 1180 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55421401680 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5