BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474088
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49510.1 | Symbols: emb1273 | embryo defective 1273 | chr1:1... 1434 0.0
> AT1G49510.1 | Symbols: emb1273 | embryo defective 1273 | chr1:18326870-18328610
FORWARD LENGTH=1215
Length=1215
Score = 1434 bits (776), Expect = 0.0
Identities = 953/1035 (92%), Gaps = 25/1035 (2%)
Strand=Plus/Plus
Query 93 AAATGGCGATGTCTCATCTC-TTC-CT-TTCTTCACCTCGACCTTCACTGGCCCTGCGAC 149
|||||||||||||||||||| ||| | |||||| |||| | |||||||||| |||||||
Sbjct 155 AAATGGCGATGTCTCATCTCTTTCTTTCTTCTTCGCCTCAATCTTCACTGGCTCTGCGAC 214
Query 150 TTCACTCGACTACCCAGTTCACGTTGAG-----CT--G--CAATAAAGATTGTACCTTTA 200
|||||||||| ||||||||||||||||| || | ||||||||||||| |||||
Sbjct 215 TTCACTCGACGACCCAGTTCACGTTGAGCTACTCTAAGAACAATAAAGATTGTTCCTTTC 274
Query 201 AGTGTGCAAATGAAGCTGAAGTATCAAAGAGATCATTCCTCCTCTGTCGTGCAATTCATA 260
|| |||||||||||||| |||||||||||||||| | | |||||||||||||||||||
Sbjct 275 AGAGTGCAAATGAAGCTAAAGTATCAAAGAGATC-GT--TGCTCTGTCGTGCAATTCATA 331
Query 261 TGGAATCTGGACATTCAGGGGAACAACCAAAGAAGCTTAATTTCGATAATCTGTTGAGGA 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 TGGAATCTGGACATTCAGGGGAACAACCAAAGAAGCTTAATTTCGATAATCTGTTGAGGA 391
Query 321 AAACTAAACATGTTTGGGATAATTCTCCACAACCGGTCAAGGAATTCCCTTGGAATAGAG 380
||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 392 GAACCAAACATGTTTGGGATAATTCTCCACAGCCGGTTAAGGAATTTCCTTGGAATAGAG 451
Query 381 CATTTGAAAACTTTATACAGCTTGTTCTTGATCTCGCTATATCAGTCGTTAAGTTCTTGT 440
|||| | |||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 452 CATTCGGAAACTTCATACAGCTCGTTCTTGATCTCGCTATATCAGTCGTTAAGTTCTTGT 511
Query 441 TTGTTCCTATATTGGCGGTTTCTTCCATCAGTGAGATGTCTTATTGTGCACATGAGAGGA 500
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 512 TCGTTCCTATATTGGCGGTTTCTTCCATTAGTGAGATGTCTTATTGTGCTCATGAGAGGA 571
Query 501 AACTTGCTTTAGTCCCGTTTCCGTTAGTCATCGGTGTGGTTGTTGCTGGCATTCTACAAG 560
|||||||||||||||| ||||| |||||||||||| ||||||| |||||| |||||||||
Sbjct 572 AACTTGCTTTAGTCCCATTTCCATTAGTCATCGGTATGGTTGTCGCTGGCGTTCTACAAG 631
Query 561 AAACCGCGTTGAAGATCTCTCCTCGTCTTAAGGAAGCGGAAGTACCGTGGCATTTGATAG 620
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 632 AAACCGCTTTGAAGATCTCGCCTCGTCTTAAGGAAGCGGAAGTACCGTGGCATTTGATAG 691
Query 621 CTATGATGATGTTCTTCACTCTGATTAAGCTTCCTGGACCGTACTATCCATATTGGGGAC 680
|||||||||||||||||||||||||||||||||||||||| || || || |||||||| |
Sbjct 692 CTATGATGATGTTCTTCACTCTGATTAAGCTTCCTGGACCATATTACCCGTATTGGGGGC 751
Query 681 GTTTATTTGTTCCACATTTTGCAAATGGAGTATTGTTTAGAGCACTTTGGTCCATGtttt 740
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 752 GTTTATTAGTTCCACATTTTGCAAATGGAGTATTACTTAGAGCACTTTGGTCCATGTTCT 811
Query 741 tttGGTATAAGAAGACTAGAAACACATCAGGAAATCCTCTGCAGAATCCCAGTTTGGAAA 800
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 812 TTTGGTATAAGAAGACTAGAAACACATCAGGAAATCCTCTGCAGAATCACAGTTTGGAAA 871
Query 801 CAAAATGAGCATCTTCATCTAAAGG--GGTTGTTTTTTAGGTGCCAACTGGTCA-TTATG 857
|| |||||||||||||||| ||||| ||| ||||| || |||||| |||||| || ||
Sbjct 872 CAGAATGAGCATCTTCATCAAAAGGCTGGT-GTTTTAAAG-TGCCAAGTGGTCACTT-TG 928
Query 858 ATTAGTTTCGGGGATTATCTGGAACCCTCGCGGATTAGTGTTCGAGCATAGATAGGAGCT 917
|||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||
Sbjct 929 ATTAGTTTCGGGGATTATCTGGAACC-TCGTGGAGTAGTGTTCGAGCATAGATAGGAGCT 987
Query 918 TTCTTCTTAttttttttCTCTCTTCAATCTCAGAGAAGTTGAGGTCAATGAGTTAACAAC 977
|||||||| || |||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 988 TTCTTCTTCTTCTTTT-CTCTCTTCAATCTCAGAGAAGTTGAGGTTAATGAGTTAACAAC 1046
Query 978 ATCTTTTCGGCCATAGAATTGTTTTGTTTTGTGTTC-CTTCTTTGGAAGATTGTCACAGT 1036
||||||| |||||||||||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 1047 ATCTTTTAGGCCATAGAATTGTTTTGTTTTGTGTTCTCTTCTTTGGAAAATTGTCTCAGT 1106
Query 1037 TCTTGTGAAAACCGCTGTTCTTTGGGTATGTATTTGTATCTTGAGTTTTTGTTTTTGGTC 1096
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1107 TCTTGTGAAAACCGCTATTCTTTGGATATGTATTTGTATCTTGAGTTTTTGTTTTTGGTC 1166
Query 1097 TTGACAAAATTTTAT 1111
|||||||||||||
Sbjct 1167 A-GACAAAATTTTAT 1180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421401680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5