BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474089
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49520.1 | Symbols: | SWIB complex BAF60b domain-containing... 1849 0.0
AT3G19080.1 | Symbols: | SWIB complex BAF60b domain-containing... 593 1e-168
> AT1G49520.1 | Symbols: | SWIB complex BAF60b domain-containing
protein | chr1:18329696-18331869 FORWARD LENGTH=1337
Length=1337
Score = 1849 bits (1001), Expect = 0.0
Identities = 1111/1165 (95%), Gaps = 3/1165 (0%)
Strand=Plus/Plus
Query 1 ttttt-ttCTTGGAAGGAACAGAGAAATGGTTTCGGACTCGGACCTCGTGACCCAGCTCC 59
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 TTTTTCTTCTTAGAAGGAACAGAGAAATGGTTTCGGACTCGGACCTCGTGACCCAGCTCC 74
Query 60 GGGAAATTCTCCGTAGCTCCGACCTAGAAACAACGACTCCGGCGAGCGTTCGCCGTCAGC 119
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 75 GGGAAATTCTCCGTAGCTCCGACCTAGAAACTACGACTCCGGCGAGCGTTCGCCGTCAGC 134
Query 120 TGGAGGCGTATTTCGGCGTCGAATTAACCGATAAGAAAGCTTTCGTCAGGGAACAAATCG 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TGGAGGTGTATTTCGGCGTCGAATTAACCGATAAGAAAGCTTTCGTCAGGGAACAAATCG 194
Query 180 ATGCTTTTCTTGAAAGTGAAGCTTTGTTGGAAAGCAAACCCGAGGAAGAAGAAGAAGACT 239
|||||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||
Sbjct 195 ATGCTTTTCTTGAAAGCGATGCTTTGTTAGAAAGCAAACCCGAGCAAGAAGAAGAAGACT 254
Query 240 GTAATGGTGATCAAAACGATGAAGAAGGAAGTGAAAACGATGATGATAAGACCGAACCAC 299
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 255 GTAATGGCGATCAAAACGATGAAGAGGGAAGTGAAAACGATGATGATAAGACCGAACTAC 314
Query 300 CGGTAAAGGCTAAGAAACGTGGAGGTGGGTTTAACAAAATTTGTCAGCTTTCTCCACAAC 359
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 315 CGGTAAAGGCTAAGAAACGTGGAGGTGGGTTTAACAAAATATGTCAGCTTTCACCACAAC 374
Query 360 TAGAGAAGTTTTTAGGAACTTCTCAGTTGGCTCGAACAGAGGTTGTGAAGAAAATGTGGG 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 375 TAGAGAAGTTTTTAGGAACTTCTCAATTGGCTCGAACAGAGGTTGTGAAGAAAATGTGGG 434
Query 420 CATATATCAGAGAGCACGATTTGCAAGATCCAAAGAATAGGCGGAATATATTATGCGACG 479
| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 435 CGTATATCCGAGAGCACGATTTGCAAGATCCAACGAATAGGCGGAATATATTATGCGACG 494
Query 480 ATTCGCTTCATTCGTTATTTCGTGTAAAGACAATTGATATGTTTCAAATGAACAAGGCAT 539
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 495 AGTCGCTTCATTCGTTATTTCGTGTAAAGACAATTAATATGTTTCAAATGAACAAGGCAT 554
Query 540 TGGCAAAGCATATTTGGCCGCTAAATGATGGACATGGGTGTGTTAAGAATGTGAAAGGGG 599
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| ||
Sbjct 555 TGGCAAAGCATATTTGGGCGCTAAATGATGGAGATGGGTGTTTTAAGAATGTGAAAGAGG 614
Query 600 AAGATGAAGATGAGACATCAGGGGAAAGATATGAGAAAGAGGTAAAAATCGAAGAAGCGG 659
|||||| ||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 615 AAGATGTTGATGAGACATCAGGGGAAAGAGACGAGAAAGATGTAAAAATCGAAGAAGCGT 674
Query 660 TAGAGAATAATGAAGAAGTA-AGTGGAGAAGAGGAAGATCGTAGTGTCCGAAAACGCAAA 718
|||||||||| ||||||| | ||| ||||||| |||||||||||||||||||||||||||
Sbjct 675 TAGAGAATAACGAAGAAG-AGAGTAGAGAAGAAGAAGATCGTAGTGTCCGAAAACGCAAA 733
Query 719 CGCAAGAAAAGAAAACCAGCCAAGTCCGAGGAGAAACCGAAGAAAAAAGGAGGCGGCTTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 734 CGCAAGAAAAGAAAACCAGCCAAGTCCGAGGAGAAACCGAAGAAAAAAGGAGGTGGTTTT 793
Query 779 ACCAAAGTTTGCAGTCTTTCACCAGAACTTCAGGCTTTTACTGGAACGGCTCAGTTAGCT 838
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 794 ACCAAAGTTTGCAGTCTTTCACCAGAACTTCAGGCTTTTACTGGAACGCCTCAGTTAGCT 853
Query 839 AGAACAGAGGTTGTGAGAATGCTTTGGAAATACATAAAGGAGAACAATTTGCAAGATCCA 898
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 AGAACAGAGGTTGTGAAAATGCTTTGGAAATACATAAAGGAGAACAATTTGCAAGATCCA 913
Query 899 TCAGATAAACGCACAATAATATGCGATGAATCATTACGGTCTCTGTTCCCTGTTGAGTCT 958
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 914 TCTGATAAACGCACAATAATATGCGACGAATCATTGCGGTCTCTGTTCCCTGTGGAGTCT 973
Query 959 ATCAATATGTTTCAAATGAACAAACAACTAACCAAGCACATTTGGCCTCTAGTACAGGAG 1018
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 974 ATCAATATGTTTCAAATGAACAAACAACTAGCCAAACACATTTGGCCTCTAGTACAGGAG 1033
Query 1019 GATGAAGCAGGAACAACTAACGATTCAGAGAAGGGAAAACAGAAAATGAAAATGGAGATA 1078
|||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| |
Sbjct 1034 GATGAAGCAGGAACAACTAATGATCCAGAGAAGGGAAAGCAGAAAATGAAAATGGAGACA 1093
Query 1079 GACGCAGATTATGATGAAGCAAATGATGAAAAGGCTACTTCATCAAGAATCAAGACTGAA 1138
|||| |||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1094 GACGAAGATAATGATGAATCAAATGAAGAAAAGGCTACTTCATCAAGAATCAAAACTGAA 1153
Query 1139 CAATGATTCGAGTGAGAAGCTGAAA 1163
||||||||||||||||||||||||
Sbjct 1154 GAATGATTCGAGTGAGAAGCTGAAA 1178
Score = 137 bits (74), Expect = 2e-31
Identities = 86/91 (95%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 1174 GGTCTCAAAGC-TTCTGACTAACCACTTCATCAAGACT-AACCAATGATTC-GTCATTCG 1230
||||||||||| |||| ||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 1228 GGTCTCAAAGCTTTCTAACTAACCACTTCATCAAGACTGAAC-AATGATTCTGTCATTCG 1286
Query 1231 AAGGGGCCAATTTTGGTAAGTATTTCATATA 1261
|||||||||||||||||||||||||||||||
Sbjct 1287 AAGGGGCCAATTTTGGTAAGTATTTCATATA 1317
> AT3G19080.1 | Symbols: | SWIB complex BAF60b domain-containing
protein | chr3:6595344-6598848 FORWARD LENGTH=1722
Length=1722
Score = 593 bits (321), Expect = 1e-168
Identities = 626/768 (82%), Gaps = 41/768 (5%)
Strand=Plus/Plus
Query 262 AGAAGGAAGTGAAAACGATGATGATAA-GACCGAACCACCGGTAAAGGCTAAGAAACGTG 320
||| ||||||| || || || || || || |||| || |||||||| ||||| || |
Sbjct 431 AGATGGAAGTGGAAGTGAGGAAGAGAAGGA-AGAACGGCCAGTAAAGGCCAAGAAGCGAG 489
Query 321 GAGGTGGGTTTAACAAAATTTGTCAGCTT-TCTCCACAACTAGAG-AAGTTTTTAGGAAC 378
| ||||| ||| |||| | | |||| || ||||||||||| ||| ||||| || ||| |
Sbjct 490 GTGGTGGCATTACCAAAGTATCTCAG-TTATCTCCACAACTTGAGAAAGTTGTT-GGAGC 547
Query 379 TTCTCAGTT-GGCTCGAACAGAGGTTGTGAAGAAAATGTGGGCATATATCAGAGAGCACG 437
|||||||| || |||||| |||||||||||||||||||||||||||||| ||||| | |
Sbjct 548 ATCTCAGTTAGG-TCGAACCGAGGTTGTGAAGAAAATGTGGGCATATATCCGAGAGAAGG 606
Query 438 ATTTGCAAGATCCAAAGAATAGGCGGAATATATTATGCGACGA-TTCGCTT-CATTCGTT 495
|||||||||| |||||| ||||| |||| ||| | || ||||| || | || ||||| ||
Sbjct 607 ATTTGCAAGACCCAAAGGATAGGAGGAAGATAGTGTGTGACGAGTT-G-TTGCATTCCTT 664
Query 496 ATTTCGTGTAAAGACAATTGATATGTTTCAAATGAACAAGGCATTGGCAAAGCATATTTG 555
|| ||||| ||||| ||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 665 GTTCCGTGTTAAGACCATTAATATGTTTCAAATGAACAAGGCATTAACCAAGCATATTTG 724
Query 556 GCCGCTAAA-TGATGGACATGGGTGTGTTAA-GAATGTGAAAGGGGAAGATGAAGATGAG 613
||| || | ||||||| ||||||||| ||| || |||||||| |||||||||||||||
Sbjct 725 GCC-CTTAGGTGATGGAGATGGGTGTGCTAACGA-TGTGAAAGAAGAAGATGAAGATGAG 782
Query 614 ACATCAG-GGGAA-AGATATGAGAAAGAGGTAAAA-ATCGAAGAAGCGGTAGAGAATAAT 670
|||||| ||||| ||||| |||||| || | | | |||||||| || |||||||||
Sbjct 783 GCATCAGAGGGAACAGATA--AGAAAGGGG-AGCAGAGCGAAGAAGTGGAAGAGAATAAG 839
Query 671 GAAGAAGTAAGTGGAGAAG-AGGAAGATCGTAGTGTCCGAAAACGCAAACGCAAGAAAAG 729
||||||| ||||| ||| | |||||| | | ||| | || |||||||| | | |||||
Sbjct 840 GAAGAAGAAAGTGAAGA-GCAGGAAGTTAGGAGTTTGCGGAAACGCAA--G-A-GAAAA- 893
Query 730 AAAACCAGCCAAGTCCG-AGGAGAAACCGAAGA-AAAA--AGGAGGCGGCTTTACCAAAG 785
|| ||||||||||| | || |||| || |||| |||| ||||||||||||| | ||||
Sbjct 894 AAG-CCAGCCAAGTCGGTAG-AGAAGCCCAAGAGAAAAGGAGGAGGCGGCTTTGCTAAAG 951
Query 786 TTTGCAGTCTTTCACCAGAACTTCAGGCTTTTACTGGAACGGCTCAGTTAGCTAGAACAG 845
||||||| || || ||||| |||||||| |||||||| | | | ||||| || ||||
Sbjct 952 TTTGCAGCCTCTCGCCAGAGCTTCAGGCGTTTACTGGGGTGACAGAATTAGCCAGGACAG 1011
Query 846 AGGTTGTGAGAAT-GCTTTGGAAATACATAAAGGAGAACAATTTGCAAGATCC-A-TCAG 902
||||||||| ||| ||||||||| |||||||||||||||||||| |||||||| | | |
Sbjct 1012 AGGTTGTGA-AATTGCTTTGGAAGTACATAAAGGAGAACAATTTACAAGATCCGAAT--G 1068
Query 903 ATAAACGCACAATAATATGCGATGAATCATTACGGTCTCTGTTCCCTGTTGAGTCTATCA 962
|||||||| | ||||||||||| |||||||| || |||||||||||||| ||||| ||||
Sbjct 1069 ATAAACGCTCTATAATATGCGACGAATCATTTCGATCTCTGTTCCCTGTCGAGTCCATCA 1128
Query 963 ATATGTTTCAAATGAACAAACAACTAACCAAGCACATTTGGCCTCTAG 1010
|||||||||||||||| ||||| ||||| |||||||| |||||| |||
Sbjct 1129 ATATGTTTCAAATGAATAAACAGCTAACAAAGCACATATGGCCTTTAG 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5