BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474091
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49560.1 | Symbols: | Homeodomain-like superfamily protein ... 1720 0.0
> AT1G49560.1 | Symbols: | Homeodomain-like superfamily protein
| chr1:18342554-18344363 FORWARD LENGTH=1435
Length=1435
Score = 1720 bits (931), Expect = 0.0
Identities = 1215/1340 (91%), Gaps = 68/1340 (5%)
Strand=Plus/Plus
Query 1 TTGGGATCATGCCAAATTCTGG-AAAAGTTTTGAGTTTTTAA---G-ATCGAGAACAAAT 55
||| |||||||||||||||||| ||||| ||||||||||||| | |||||||| ||||
Sbjct 109 TTGAGATCATGCCAAATTCTGGAAAAAG-TTTGAGTTTTTAATTCGAATCGAGAAAAAAT 167
Query 56 AAAAATGGGTTCTTTGGGTGATGAGCTGAGTTTGGGATCGATCTTTGGGAGAGGAGTTTC 115
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 168 AAAAATGGGTTCTTTAGGTGATGAGCTTAGTTTGGGATCGATCTTTGGGAGAGGAGTTTC 227
Query 116 GATGAATGTTGTAGCGGTGGAGAAAGTTGATGAACATGTTAAGAAGCTTGAAGAAGAGAA 175
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 228 GATGAATGTTGTGGCGGTTGAGAAAGTTGATGAACATGTTAAGAAGCTTGAAGAAGAGAA 287
Query 176 GAGAAAGATCGAAAGTTGTGAACTTGAGCTTCCTCTGTCTTTGCAGATTTTAAACGATGC 235
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 288 GAGAAAGCTCGAAAGTTGTCAACTTGAGCTTCCTCTGTCTTTGCAGATTTTAAACGATGC 347
Query 236 GATTTTGTATCTCAAGGATAAGAGATGTTTAGAGATGGAGACTCAACCATTGTTGAAAGA 295
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 348 GATTTTGTATCTGAAGGATAAGAGATGTTCAGAGATGGAGACTCAACCATTGTTGAAAGA 407
Query 296 TTTCATCTCTTTTAATGAA--T-T----GGTGAA-GAG-A---GA-T-G---A---G--- 332
|||||| ||| ||||| || | | || ||| ||| | || | | | |
Sbjct 408 TTTCATTTCTGTTAATAAACCTATTCAAGGAGAAAGAGGAATAGAATTGCTGAAAAGAGA 467
Query 333 ----CTAATGATGGAGAAGAAGTTTCAGCAATGGAAAGCTAATGATGATCACACTAGTAA 388
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GGAGCTAATGAGGGAGAAGAAGTTTCAGCAATGGAAAGCTAATGATGATCACACTAGTAA 527
Query 389 GATCAAGAGCAAGCTTGAGATTGAGAGAAATGAGGAGAAATCTTCTATGTTGTTGATTCC 448
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 528 GATCAAGAGCAAGCTTGAGATTAAGAGAAATGAGGAGAAATCTCCTATGTTGTTGATTCC 587
Query 449 AAAAGTAGAAACTGGTTTAGGCCTCGGTTTAGGTTTGAGTTCCATAAGAAGAAAAGGGAT 508
||| || |||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 588 AAAGGTGGAAACTGGTTTAGGCCTCGGTTTAAGTTCGAGTTCGATAAGAAGAAAAGGGAT 647
Query 509 TGTTGCCTCTTGTGGTGGATTTACTTCTAACTCTATGCCACAACCACCACCACCACCAGC 568
||||||||| ||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct 648 TGTTGCCTCATGTGGC---TTTACTTCTAACTCTATGCCACAACCACCA--AC-ACCAGC 701
Query 569 AGTAGTACCACAGCAACCAGCATTTCTTCAGCAGCAAGCTTTAAGGAAGCAAAGAAGGTG 628
|||| ||||| ||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 702 AGTA---CCACAACAACCAGCATTTCTTAAGCAGCAAGCTTTACGGAAGCAAAGAAGGTG 758
Query 629 TTGGAATCCTGAGTTGCATCGCCGTTTTGTCGATGCATTGCAACAGCTAGGTGGACCGGG 688
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 759 TTGGAATCCAGAGTTGCATCGCCGATTTGTCGATGCATTGCAACAGCTAGGTGGACCGGG 818
Query 689 AGTGGCAACTCCTAAACAAATTAGAGAACATATGCAAGAAGAAGGCTTAACCAATGATGA 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 AGTGGCAACTCCTAAACAAATTAGAGAACATATGCAAGAAGAAGGCTTAACCAATGATGA 878
Query 749 AGTCAAGAGTCATTTACAGAAATACAGGTTACACATCAGGAAGCCGAATTCGAATGCGGA 808
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 879 AGTCAAGAGTCATTTACAGAAATACAGGTTACACATCAGGAAGCCAAATTCGAATGCGGA 938
Query 809 GAAACAATCAGCAGTTGTTTTAGGGTTTAAGTTATGGAATTCATCATCGCAAGAGGAAGA 868
|||||||||||||||||||||||||||||| || |||||||| ||| | ||||| |||||
Sbjct 939 GAAACAATCAGCAGTTGTTTTAGGGTTTAACTTGTGGAATTCTTCAGCACAAGATGAAGA 998
Query 869 AGAAACAGGTGAAGGAGGAGAATCATCGAAGAGAAGCAATTCGCAATCGGATTCTCCTCA 928
||| ||| |||||||||||||||||| ||||||||||||| ||||||| |||||||||||
Sbjct 999 AGAGACATGTGAAGGAGGAGAATCATTGAAGAGAAGCAATGCGCAATCAGATTCTCCTCA 1058
Query 929 AGGTCCTTTGCAGTTACCTTCTACAACAACTACAACTGGTGGAGATAGTAGCATGGAAGA 988
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1059 AGGTCCTTTGCAGTTACCGTCTACAACAACAACAACTGGTGGAGATAGTAGCATGGAAGA 1118
Query 989 TGTTGAAGATGCTAAGTCTGAGAGCATTCAAATGGAGAGATTGAGATCTCCATAAACCTC 1048
||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||
Sbjct 1119 TGTTGAAGATGCTAAGTCTGAGAGCTTTCAACTGGAGAGATTGAGATCACCATAAATCTC 1178
Query 1049 AAGAAACCAAACTCTTGATCACGGTTTTGTTATTTTGGATTCATTACTATTTCTATTAGT 1108
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1179 AAGAAACCAAACTCTTGATCACGGTTTTGTTATTTTGGATTCATTACTATATCTATTAGT 1238
Query 1109 AGTGAATGAGAACAATAATTATAGAAAAGTTATAGatatatatatatataGAGAGaaaaa 1168
||||||||||||||||||||||||||| ||| || || ||||||||||||||| ||||
Sbjct 1239 AGTGAATGAGAACAATAATTATAGAAAGGTT-TA--TAGATATATATATAGAGA-AAAA- 1293
Query 1169 aaaGAGCTATAGAGTGAGGATGGTTCAAATTATTTGCAGAGATTGTTA-TTAGCCTTGTT 1227
||| | ||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 1294 ---GAG--A--GAGTGAGGATGGTTCAAATTATTTGCAGAGATTAT-ACTTAGCCTTGTT 1345
Query 1228 TTGCGTA--CGGCTTTTTT-GGTTGGGGTTTAAATTT----GAGGCATTAT----TATCC 1276
|| ||| |||||||||| ||||||| ||| | ||| |||||||||| ||| |
Sbjct 1346 TTT-GTAAACGGCTTTTTTTGGTTGGGTTTTTATTTTTCTTGAGGCATTATCCAATATTC 1404
Query 1277 AAGTAATAATTTTGGTGTTT 1296
|||||||||||||| |||||
Sbjct 1405 AAGTAATAATTTTGATGTTT 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5