BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474094
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49590.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 1430 0.0
> AT1G49590.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr1:18354786-18356642 FORWARD LENGTH=1173
Length=1173
Score = 1430 bits (774), Expect = 0.0
Identities = 942/1020 (92%), Gaps = 24/1020 (2%)
Strand=Plus/Plus
Query 67 AGTT-CGGTAACTTCGTTTTGTGGGTTTAAGCTTGGATTCAATCTTCA--T-C---AT-- 117
|||| ||||||||||||||| ||||||||| || ||||||||||||| | | ||
Sbjct 146 AGTTCCGGTAACTTCGTTTTCTGGGTTTAATTTTCGATTCAATCTTCATCTCCTTGATCC 205
Query 118 -CAGCCATGACTGAGTATTGGGTAAGCCAAGGCAACAAATGGTGTGAATTCTGTAAGATC 176
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 206 ACAGCCATGACTGAGTATTGGGTAAGTCAAGGGAACAAATGGTGTGAATTCTGTAAGATA 265
Query 177 TGGATTCAGAACAATCCAACAAGTATTAGAAACCATGAGCTTGGTAAGCGTCACCGAGAA 236
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 266 TGGATACAGAACAATCCAACAAGTATTAGAAACCATGACCTTGGTAAGCGTCACCGAGAA 325
Query 237 TGTGTTGATAAGAAGCTCACTGATATGCGTGAGAAGAGTGCAGCCAAAGACAAAGAGCTC 296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 326 TGTGTTGATAAGAAGCTCACTGATATGCGTGAGAGGAGTGCAGCCAAAGACAAAGAGCTC 385
Query 297 AAGAAAAACGAAAAATTGCTTCAACAGATCGAAGCTAAAGCAACTCGTAGCTATCAGAAA 356
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 AAGAAAAACGAAAAACTGCTTCAACAGATCGAAGCTAAAGCAACTCGTAGCTATCAGAAA 445
Query 357 GATATAGCAACTGCTCAACAAGTAGCAAAAGCAAACGGTGCACCGGAGGATGGTACATCT 416
||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 446 GATATTGCAACTGCTCAGCAAGTAGCTAAAGCAAACGGTGCACCAGAGGATGGTACATCC 505
Query 417 GGTTGGGTGCTTGACAGTGCTTCGGGCTATTATTATAACCAAACTAATGGTCTGCACTAT 476
| |||| |||| ||||||||||| ||||||||||| ||||| || |||||||||||||||
Sbjct 506 GATTGGATGCTCGACAGTGCTTCAGGCTATTATTACAACCAGACCAATGGTCTGCACTAT 565
Query 477 GATTCACAGTCTGGATTCTATTACAGTGACTCCATAGGACATTGGGTGACACAAGACGAG 536
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 566 GATTCACAGTCTGGATTCTATTACAGTGACTCAATAGGACATTGGGTGACACAAGACGAG 625
Query 537 GCATACACTGCGGTTAAAACTTCATCAGGAACCAAAGTACCTCTCGTTAAAAAGCCTATA 596
|| ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| ||
Sbjct 626 GCCTACGCTGCGGTTAAAACATCATCAGGAACCAAAGTACCTCTCGTGAAAAAGCCTGTA 685
Query 597 CT-TTCTTCAGAAGCTGGACCAAGTGTGGTGAAACCACCTGGTCGTCTTGTCACGGCTTC 655
| |||||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||
Sbjct 686 -TCTTCTTCAGGAGCTGGACCAAGTGTGGGGAAACCACCTGGCCGTCTTGTCACAGCTTC 744
Query 656 TTTAAATCCTAAAAGGGCTGTGAAAGGAGC-TATGTCATCTGTTGATCTTGGCAACAACA 714
||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct 745 TTTAAATCCTAAAAGAGCTGTGAAAGGAGCGGCT-TCATCTGTTGATCTTGGCAACAACA 803
Query 715 AGAGAAAGAGACAAGATGAGAAACCGAAGAAAGTATCTGCAGAAGAGAAAGCTGCATTGA 774
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 AGAGAAAGAGGCAAGATGAGAAACCGAAGAAAGTATCTGCAGAAGAGAAAGCTGCATTGA 863
Query 775 AGGCGAGAGAAGCTGCTAGGAAACGAGTTGAAGATAGAGAAAAACCATTGCTTGGTCTTT 834
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 AGGCAAGAGAAGCTGCTAGGAAACGAGTTGAAGATAGAGAAAAACCATTGCTTGGTCTTT 923
Query 835 ACAATAGACCCTTCTGATGCATTGTTGGCTTGATC-T-TCTGTAAAAGGGAGAGGCCAAG 892
||||||||||||| |||||||| ||||||||||| | | || ||||||||||||| |||
Sbjct 924 ACAATAGACCCTTTTGATGCATCATTGGCTTGATCCTATATGCAAAAGGGAGAGGCTAAG 983
Query 893 CAGAGAAGAGTGATGACTGATGATTGATCTCATCGTGGCAGTGATTTCAGTTATTCCTAA 952
|||||||||||||||| | |||| ||||| ||||| || ||||||||||||||||
Sbjct 984 CAGAGAAGAGTGATGA-T--TGAT----CTCATTGTGGCGGTTATTTCAGTTATTCCTAC 1036
Query 953 ATGAC-GTTTATTCCAAAACTCTCTAGTATTCCTGGGAGCATTGGTCTCGTGTTCTTCTA 1011
||||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 1037 ATGACAGTTTATTCCAAAACTCTCTGGTATTTCTGGGAGCATTGGTCTTGTGTTCTTCTA 1096
Query 1012 ACTGTTGTTCAAGTCATATCAGTTTCCTCTTTGTTGTAAACACCTATTCAATTTTTTAGT 1071
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1097 ACTGTTGTTCCAGTCATATCAGTTTCCTCTTTGTTGTACACACCTATTCAATTTTATAGT 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5