BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474095
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 4... 2625 0.0
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 4... 917 0.0
> AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein
47A | chr1:18356886-18360150 REVERSE LENGTH=1688
Length=1688
Score = 2625 bits (1421), Expect = 0.0
Identities = 1605/1688 (95%), Gaps = 36/1688 (2%)
Strand=Plus/Plus
Query 1 ATGCAGACACCAAACAACAACGGTTCAACAGATTCAGTGTTACCACCAACATCAGCCGGa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAGACACCAAACAACAACGGTTCAACAGATTCAGTGTTACCACCAACATCAGCCGGA 60
Query 61 acaacaccaccaccaccgttgcagcaatcaacaccaccacctcagcaacagcaacaacaa 120
||||||||||||||||||||||||||||||||||||||| | | | ||||| ||||||
Sbjct 61 ACAACACCACCACCACCGTTGCAGCAATCAACACCACCA-C-C-G---CAGCAGCAACAA 114
Query 121 caacaacagtggcaacaacaacaacaaTGGATGGCTGCTATGCAGCAATACCCTGCAGCT 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 115 CAACAACAGTGGCAACAACAACAACAATGGATGGCTGCGATGCAGCAATACCCTGCAGCT 174
Query 181 GCTATGGCTATGATGCAACAACAACAGATGATGATGTATCCTCACCATCAATACGCTCCT 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 175 GCTATGGCTATGATGCAACAACAACAGATGATGATGTATCCTCACCCTCAATACGCTCCT 234
Query 241 TACAATCAAGCTGCTTATCAACAGCATCCTCAGTTTCAATACGCTGCTGCTTATCAACAG 300
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 235 TACAATCAAGCTGCTTATCAACAGCATCCTCAGTTTCAATA--C-GCTGCTTATCAACAG 291
Query 301 CAACAACAGCATCACCAGAGTCAGCAGCAG-AAACAGCAGCCACGTGGTGGATCTGGTGG 359
|| || ||||| | | | ||| ||| || | ||||||||||| ||||||||||||||
Sbjct 292 CAGCAGCAGCA--A-C--A-TCACCAG-AGTCAGCAGCAGCCACGCGGTGGATCTGGTGG 344
Query 360 TGATGATGTGAAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCT 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TGATGATGTCAAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCT 404
Query 420 CCATACCTGTTTTTCTCACACCAATGAGGTTTCTTCTGTGAAAGTTATACGCAACAAGCA 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 CCATACCTGTTTCTCTCACACCAATGAGGTTTCTTCTGTGAAAGTTATACGCAACAAGCA 464
Query 480 AACTTGTCAATCTGAAGGATATGGGTTTGTTGAGTTTCTTTCACGTTCAGCAGCTGAGGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 AACTTGTCAATCTGAAGGATATGGGTTTGTTGAGTTTCTTTCACGTTCAGCAGCTGAGGA 524
Query 540 AGCTCTTCAGAGCTTTAGCGGTGTAACAATGCCGAACGCGGAACAGCCTTTCCGTTTAAA 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 525 AGCTCTTCAGAGCTTTAGCGGTGTTACAATGCCGAACGCGGAACAGCCTTTCCGTTTAAA 584
Query 600 CTGGGCATCTTTCAGTACTGGTGAGAAAAGAGCATCAGAGAATGGTCCTGACCTATCAAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 585 CTGGGCATCTTTCAGTACTGGTGAGAAAAGAGCATCAGAGAATGGTCCTGACCTATCCAT 644
Query 660 ATTTGTTGGAGATTTGGCTCCAGATGTGAGTGATGCTGTCTTGCTTGAGACTTTTGCTGG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 ATTTGTTGGAGATTTGGCTCCAGATGTGAGTGATGCTGTCTTGCTTGAGACTTTTGCTGG 704
Query 720 TAGATATCCATCTGTCAAAGGTGCGAAAGTTGTGATCGATTCCAACACCGGGCGTTCCAA 779
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 705 TAGATATCCATCTGTCAAAGGTGCTAAAGTTGTGATTGATTCCAACACTGGGCGTTCCAA 764
Query 780 AGGTTACGGGTTTGTCAGGTTTGGTGATGAGAATGAACGATCAAGGGCTATGACAGAAAT 839
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 765 AGGTTACGGGTTTGTTAGGTTTGGTGATGAGAATGAGCGATCAAGAGCTATGACAGAAAT 824
Query 840 GAATGGTGCTTTCTGTTCAAGCAGGCAAATGCGTGTTGGTATCGCAACCCCGAAAAGAGC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 825 GAATGGTGCTTTCTGTTCAAGCAGGCAAATGCGTGTTGGTATCGCAACCCCGAAAAGGGC 884
Query 900 TGCTGCTTACGGCCAACAAAATGGTTCACAAGCTCTCACACTGGCTGGTGGACATGGAGG 959
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 885 TGCTGCTTACGGCCAACAAAATGGTTCACAAGCTCTTACACTTGCTGGTGGACATGGAGG 944
Query 960 AAATGGTTCACTGTCTGATGGAGAATCAAATAACTCAACAATATTTGTTGGTGGCCTTGA 1019
||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 945 GAATGGTTCAATGTCTGATGGAGAATCAAATAACTCAACAATATTTGTTGGCGGTCTTGA 1004
Query 1020 TGCTGATGTTACTGAGGAAGACCTCATGCAACCTTTTTCCCAGTTTGGGGAAGTTGTTTC 1079
||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||
Sbjct 1005 TGCTGATGTTACTGAAGAAGACCTCATGCAACCTTTTTCCGATTTTGGGGAGGTTGTTTC 1064
Query 1080 AGTGAAGATCCCAGTAGGAAAAGGATGTGGCTTTGTCCAATTTGCTAACAGGCAGAGTGC 1139
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1065 AGTGAAGATCCCAGTAGGGAAAGGATGTGGCTTTGTCCAATTTGCTAACAGGCAAAGTGC 1124
Query 1140 TGAAGAAGCCATTGGGAACTTGAACGGGACAGTCATCGGGAAAAACACTGTCCGCCTTTC 1199
||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1125 TGAGGAAGCCATCGGGAACTTGAACGGGACAGTCATTGGGAAGAACACTGTCCGCCTTTC 1184
Query 1200 GTGGGGAAGAAGCCCCAACAAACAGTGGAGAAGTGACACTGGCAACCAATGGAATGGAGG 1259
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1185 ATGGGGAAGAAGCCCCAACAAACAGTGGAGAAGTGACTCTGGCAACCAATGGAATGGAGG 1244
Query 1260 ATATTCAAGAGGTCAAGGTTACAACAATGGATATGCTAATCAGGACTCAAACATGTACGC 1319
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1245 ATATTCAAGAGGTCAAGGATACAACAATGGATATGCCAATCAGGACTCAAACATGTACGC 1304
Query 1320 TACTGCAGCGGCTGCTGTCCCAGGAGCTTCTTGAAAGTGTTGGTATGTCTCTATCATCAG 1379
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1305 TACTGCAGCGGCTGCAGTCCCGGGAGCTTCTTGAAAGTGTTGGTATGTCTCTATCATCAG 1364
Query 1380 AAACCCCGTGAGTCCTGGACTTACGGGTATTGGGATAAAAACAAACCATTGGGTGATCAA 1439
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1365 AAACCCTGTGAGTCCTGGACTTACGGGTATTGGGATAAAAACAAACCGTTGGGTGATCAA 1424
Query 1440 AGTGATCCATCCAATGATAGTTGTTGGTTCAGAGGTTAGCTCGCACCATCGAAACTAAAA 1499
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 AGTGATCCATCCGATGATAGTTGTTGGTTCAGAGGTTAGCTCGCACCATCGAAACTAAAA 1484
Query 1500 CCTCTAGTGTCCAAAGAGGGTTTTGTATCCTGGATTTGAATCTTGCTTATCTTGCTGTCT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 CCTCTAGTGTCCAAAGAGGGTTTTGTATCCTGGATTTGAATCTTGCTTATCTTGCTGTCT 1544
Query 1560 CAGTCTCTGTCAAAATTTTGGGGTTGTCTGATACTTGAATGTTT-ATTTTCAGttttttt 1618
|||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 1545 CAGTCTCTGTCAAAATTTTGGGGTCGTCTGATACTTGAATTTTTTATTTTCAGTTTTTTT 1604
Query 1619 ttt---t------GT-T-----ACTGAGACTTCCTCAAAGTCAGAG---GGTCCACAATA 1660
||| | || | |||||||||||||||||||||||| |||||||||||
Sbjct 1605 TTTGAGTTAATTTGTCTTTGTTACTGAGACTTCCTCAAAGTCAGAGCTTGGTCCACAATA 1664
Query 1661 AGTAATTT 1668
||||||||
Sbjct 1665 AGTAATTT 1672
> AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein
47B | chr3:6611198-6614044 REVERSE LENGTH=1729
Length=1729
Score = 917 bits (496), Expect = 0.0
Identities = 971/1190 (82%), Gaps = 73/1190 (6%)
Strand=Plus/Plus
Query 136 caacaacaacaaTGGATGGCTGCTATGCAGCA-ATAC-CCTGCAGCTGCTATGGCT-ATG 192
||||| ||||| ||||||||||| ||||| | || | || || || || || | | |||
Sbjct 327 CAACAGCAACAGTGGATGGCTGCCATGCA--ATATCCACCAGCGGCGGCGAT-GATGATG 383
Query 193 ATGCAACAACAACAGATGATGATGTATCCTCACCATCAATACGCTCCTTACAATCAAGCT 252
||||| || ||||||||| ||||||||||| |||||||| | ||| || ||||||| |
Sbjct 384 ATGCAGCAGCAACAGATGCTGATGTATCCT---CATCAATATGTTCCGTATAATCAAGGT 440
Query 253 GCTTATCA--A-CAGCATCCTCAG-TT--TCAATACGCTGCTGCTTATCAACAGCAACAA 306
||||||| | || ||||||||| || ||||||| | | |||||||||||| ||
Sbjct 441 CCTTATCAGCAGCATCATCCTCAGCTTCACCAATACG--GGT-CTTATCAACAGC-AC-- 494
Query 307 CAGCATCACCAGAGTCAGCAGCAGAAACAGC-AGCCACGTGGTGGATCTGGTGGTGATGA 365
||| |||| || || | || || || | || ||||||| ||| |||||
Sbjct 495 CAG---CACC--AG-CA--A-CA-CAA-GGCTATTGAC--CGTGGATC---TGGAGATGA 538
Query 366 TGTGAAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCATAC 425
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 539 TGTCAAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCATTC 598
Query 426 CTGTTTTTCTCACACCAATGAGGTTTCTTCTGTGAAAGTTATACGCAACAAGCAAACTTG 485
|| |||||||||||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct 599 TTGCTTTTCTCACACCGGCGAGGTTTCTTCTGTGAAAGTTATACGTAACAAGCTCACTTC 658
Query 486 TCAATCTGAAGGATATGGGTTTGTTGAGTTTCTTTCACGTTCAGCAGCTGAGGAAGCTCT 545
|||||| ||||| ||||||||||||||||||||||||||| | |||||||| |||| |||
Sbjct 659 TCAATCAGAAGGGTATGGGTTTGTTGAGTTTCTTTCACGTGCTGCAGCTGAAGAAGTTCT 718
Query 546 TCAGAGCTTTAGCGGTGTAACA-ATGCCGAACGCGGAACAGCCTTTCCGTTTAAACTGGG 604
||||| || ||| ||| | | ||||| ||| |||| || || |||||| |||||||||
Sbjct 719 TCAGAACTATAGTGGT-TCAGTGATGCCAAACTCGGACCAACCCTTCCGTATAAACTGGG 777
Query 605 CATCTTTCAGTACTGGTGAGAAAAGAGCA-TCAGAGAATGGTCCTGACCTATCAATATTT 663
||||||| ||||||||||| ||||||||| | || |||||||| |||||||| | |||
Sbjct 778 CATCTTTTAGTACTGGTGAAAAAAGAGCAGTG-GAAAATGGTCCAGACCTATCTGTTTTT 836
Query 664 GTTGGAGATTTGGCTCCAGATGTGAGTGATGCTGTCTTGCTTGAGAC-TTTTGCTGGTAG 722
|| ||||| ||| |||||||||| | ||| | | | |||| |||||| |||| ||| |||
Sbjct 837 GTGGGAGACTTGTCTCCAGATGTCACTGACGTTTTATTGCATGAGACCTTTT-CTGATAG 895
Query 723 ATATCCATCTGTCAAAGGTGCGAAAGTTGTGATCGATTCCAACACCGGGCGTTCCAAAGG 782
|||||| ||||||||| | || ||||||||||| |||||||||||||| || ||||||||
Sbjct 896 ATATCCTTCTGTCAAAAGCGCCAAAGTTGTGATTGATTCCAACACCGGCCGGTCCAAAGG 955
Query 783 TTACGGGTTTGTCAGGTTTGGTGATGAGAATGA-ACGATCAAGGGCTATGACAGAAATGA 841
||| || ||||| ||||| |||||||| ||||| | | ||||||||| ||||||||||||
Sbjct 956 TTATGGTTTTGTGAGGTTCGGTGATGAAAATGAGAGG-TCAAGGGCTTTGACAGAAATGA 1014
Query 842 ATGGTGCTTTCTGTTC-AAGCAGGCAAATGCGTGTTGGTATCGCAAC-CCCGAAAAGAGC 899
|||| |||| |||||| || ||||||||||||||| ||||| ||||| ||| ||||||||
Sbjct 1015 ATGGAGCTTACTGTTCGAA-CAGGCAAATGCGTGTAGGTATTGCAACTCCC-AAAAGAGC 1072
Query 900 TGCT-GCTTA-CGGCCAACAAAATGGTTCACAAGCTCTCACACTGGCTGGTGGACATGGA 957
| | ||| | | || ||||| || |||||||||| | | ||||||||||||||||||
Sbjct 1073 -GATTGCTAATCAGC-AACAACATTCTTCACAAGCTGTGATTCTGGCTGGTGGACATGGA 1130
Query 958 GGAAATGGTTC-A----------CT-G---TCTGATGGAGAATCAAATAACTCAACAATA 1002
||||||||| | || | |||||||| ||||||| |||| ||||||||
Sbjct 1131 TCAAATGGTTCCATGGGTTATGGCTCGCAGTCTGATGGCGAATCAACTAACGCAACAATA 1190
Query 1003 TTTGTTGGTGGCCTTGATGCTGATGTTACTGAGGAAGACCTCATG-CAACCTTTTTCCCA 1061
|||||||| ||| |||| ||||||||| ||| |||||||||| | ||||||||||||||
Sbjct 1191 TTTGTTGGCGGCATTGACCCTGATGTTATTGATGAAGACCTCA-GACAACCTTTTTCCCA 1249
Query 1062 GTTTGGGGAAGTTGTTTCAGTGAAGATCCCAGTAGGAAAAGGATGTGGCTTTGTCCAATT 1121
|||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1250 GTTTGGAGAGGTTGTTTCAGTGAAGATCCCAGTAGGGAAAGGATGTGGATTTGTCCAATT 1309
Query 1122 TGCTAACAGGCAGAGTGCTGAAGAAGCCATTGGGAACTTGAACGGGACAGTCATCGGGAA 1181
|||| ||||| ||||||||||||| || || | || |||||||||||||||||||| ||
Sbjct 1310 TGCTGACAGGAAGAGTGCTGAAGATGCTATCGAGAGTTTGAACGGGACAGTCATCGGCAA 1369
Query 1182 AAACACTGTCCGCCTTTCGTGGGGAAGAAGCCCCAACAAACAGTGGAGAAGTGACACTGG 1241
||||||||| | || || |||||| ||||||| ||||| ||||||||| | ||| | ||
Sbjct 1370 GAACACTGTCAGACTCTCCTGGGGACGAAGCCCAAACAAGCAGTGGAGAGGAGACTCAGG 1429
Query 1242 -CAACCAATGGAATGGAGGATATTCAAGAGGTCAAGGTTACAACAATGGA 1290
|| | | |||||||||||||| ||| |||| || |||||||||||||||
Sbjct 1430 GCAGC-AGTGGAATGGAGGATACTCACGAGGACATGGTTACAACAATGGA 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82429294890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5