BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474096

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49620.1 | Symbols: KRP7, ICN6, ICK5 | Cyclin-dependent kina...   913    0.0  


> AT1G49620.1 | Symbols: KRP7, ICN6, ICK5 | Cyclin-dependent kinase 
inhibitor family protein | chr1:18365491-18366559 REVERSE 
LENGTH=789
Length=789

 Score =  913 bits (494),  Expect = 0.0
 Identities = 564/596 (95%), Gaps = 12/596 (2%)
 Strand=Plus/Plus

Query  1    ATGAGCGAAACAAAATCCAAGAGAGATTCTGATTACGAAGGATCAAACATCAAGAGGATG  60
            ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1    ATGAGCGAAACAAAACCCAAGAGAGATTCTGAGTACGAAGGATCAAACATCAAGAGGATG  60

Query  61   AGACTCGATGATGATGATGGCGTTTTACTCTCACCGACGAGAACtctttcttcttcttcc  120
            ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct  61   AGACTCGATGATGATGATGACGTTTTACGCTCACCGACGAGAACTCTTTCTTCTTCTTCC  120

Query  121  tcttcttctctGGCTTACTCGGTTTCAGATTCCGGAGGTTTTTGCTCCGTCGCGTTATCT  180
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  121  TCTTCTTCTCTGGCTTACTCGGTTTCAGATTCCGGAGGTTTCTGCTCCGTCGCGTTATCT  180

Query  181  GAAGAAGAATACGATCATCGAAGCTCAAGCATCATCAGCTCTGGTTGTTCTAGCAGCGAA  240
            ||||||||| ||||||||| |||||||||   |||||||||||||||||| |||||||||
Sbjct  181  GAAGAAGAAGACGATCATCTAAGCTCAAG---CATCAGCTCTGGTTGTTCCAGCAGCGAA  237

Query  241  ACTAACGAAATCGCTACTCGTCTTCCATTTTCAGATCTGGAGGCTCATGAAATCTCCGAA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  ACTAACGAAATCGCTACTCGTCTTCCATTTTCAGATCTGGAGGCTCATGAAATCTCCGAA  297

Query  301  ACCGAAATCTCAACGTTAATCACCAACAACAATTTCAGCAAACAGGGAAGTCCATTAAGC  360
            |||||||||||||||||| ||||||||||   |||||| |||||||||| | ||| ||||
Sbjct  298  ACCGAAATCTCAACGTTACTCACCAACAA---TTTCAGGAAACAGGGAATTTCATCAAGC  354

Query  361  GAGAATCTGGGAGAAAGAGCTGAAATGGACTCGGCGACGACGGAGAGGAGAGATCAGAGA  420
            |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct  355  GAGAATCTGGGAGAAACAGCAGAAATGGACTCGGCGACGACGGAGATGAGAGATCAGAGA  414

Query  421  AAGACGGAGAAGAAGA------TGGAAAAAGCACCGACGCAGGCAGAGCTTGATGACTTT  474
            ||||||||||||||||      |||||||| |||||||||||||||||||||||||||||
Sbjct  415  AAGACGGAGAAGAAGAAGAAGATGGAAAAATCACCGACGCAGGCAGAGCTTGATGACTTT  474

Query  475  TTCTCGGCGGCCGAGAGATTCGAACAGAAACGATTCACAGAAAAGTACAACTACGACATC  534
            ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  475  TTCTCGGCGGCGGAGAGATACGAACAGAAACGATTCACAGAAAAGTACAACTACGACATC  534

Query  535  GTCAATGATACGCCGCTTGAAGGTCGGTACCAGTGGGTTAGTCTCAAACCTTAGAA  590
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  535  GTCAATGATACGCCGCTTGAAGGTCGGTACCAGTGGGTTAGTCTGAAACCTTAGAA  590



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28382293055


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5