BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474105
Length=2177
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49730.1 | Symbols: | Protein kinase superfamily protein | ... 3247 0.0
AT1G49720.2 | Symbols: ABF1 | abscisic acid responsive element-... 111 2e-23
> AT1G49730.1 | Symbols: | Protein kinase superfamily protein
| chr1:18402506-18405681 REVERSE LENGTH=2237
Length=2237
Score = 3247 bits (1758), Expect = 0.0
Identities = 2068/2212 (93%), Gaps = 44/2212 (2%)
Strand=Plus/Plus
Query 1 GTCACTTGTCAGTGAGTATACAAAACTATACACAGAGAGCCCTCGAATGTCATATTCACA 60
|||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||||||
Sbjct 1 GTCACTTGTCAGTGAGTATACAAAACAATACAC--AGAG-CCTCGCATGTCATATTCACA 57
Query 61 CAGGGACCTTCCGTTAAACTCC-TTTTTATAA--tc--tctc-attctctcttctctctc 114
|||||||||||||||||||||| ||||||||| || |||| ||||||||| ||||||
Sbjct 58 CAGGGACCTTCCGTTAAACTCCTTTTTTATAATCTCGTTCTCTCTTCTCTCTT-TCTCTC 116
Query 115 tctGGTTGCTCTTGGCCATGGTTGTGAATAGTCAAGCTTTCTTGTTGGCATTAATTGCAT 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TCTGGTTGCTCTTGGCCATGGTTGTGAATAGTCAAGCTTTCTTGTTGGCATTAATTGCAT 176
Query 175 TACTTGCTACCCAATTGCCTTCACTAATGGCTGCAGATTGTCCATTAGATTTCAGTGCAT 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 177 TACTTGCTACCCAATTGCCTTCACTAATGGCTGCAGATTGTCCATTAGATTTCAGTGGAT 236
Query 235 CAAATTTCACTCTAGTAGCTTCTGTGTGCTCCAACATAACCAACAGAGGCAAATGTTGCC 294
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 237 CAAATTTCACTCTAGTAGCTACTGTGTGCTCCAACATAACCAACAGAGGCAAATGTTGCC 296
Query 295 GCTACATGAACGCCTTTGTTGCGGTATCTGTGGCTCGTTACGCGAACTTGTCAACTAATC 354
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 297 GCTACATGAACGCTTTTGTTGCGGTGTCCGTGGCTCGTTACGCGAACTTGTCAACTAATC 356
Query 355 TTGGAGTCACGTCAGATTTATCTGAAATCTGTATTGCTTCCATCTCTAGAACCATGGAGA 414
|||||||||| |||||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct 357 TTGGAGTCACATCAGATTTATCTGAAACCTGCATTGCTTCCATCTCTAGAGCCATGGAGG 416
Query 415 GCTATGGAGTCTCAAGAAATGCCACTAGTTTCTGCGGTTTGGGAACCAAGATCCTTGTTA 474
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GCTACGGAGTCTCGAGAAACGCCACTAGTTTCTGCGGTTTGGGAACCAAGATCCTTGTTA 476
Query 475 AGTATGACTGCGAAGGTCGAACCACTGTAATACAAATGCATCAGTCTCCGGGATTTGGAC 534
|||||||||| || |||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 477 AGTATGACTGTGACGGTCGAACCACTGTTACACAAATGCATCAGTCTCCGGGATTTGGAC 536
Query 535 ATGTTTCTAGAAACTGCAGACTCCCATTTTCTCCGGGACACCAATGCAGGAAGTGTTTGA 594
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 537 ATGTTTCAAGAAACTGCAGACTCCCATTTTCGCCGGGACACCAATGCAGAAAGTGTTTGA 596
Query 595 ATTCTGGTATCACTTACCTTCGTAATCTCATAGGTGCAGAGACTAATAACATTACAT-TG 653
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 597 ACTCTGGCATCACTTACCTTCGTAATCTCATAGGTGCAGAGACTAATAACATTAC-TCTG 655
Query 654 AGTACTTGTCGTGACGCGACTTATGCTACATTAGCAAGCCGAATTGACGATGCATCGGCT 713
||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 656 TGTACTTGTCGTGATGCGACTTATGCTACATTAGCAAGCCGAATAGACGATACATCAGCT 715
Query 714 CTTGAACTCCTTGGCTGTTTCTTTCAAGTGACAGAGCTTAGCATTCCTTCAGAGTCATTT 773
|||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 716 CTTGAACTCCTTAGTTGTTTCTTTCAAGTGACAGAGCTTAACATTCCTTCAGAGTCATTT 775
Query 774 TCACCATTGGCAAGTCCAGAACCTTCTCCAAGCACAGTTGGTGCTATTAGCCCAAGCAAC 833
|||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 776 TCACCAGTGGCAAGTCCAGAACCTTCTCCAAGCACGGTTGGTGGTATTAGCCCAAGCAAC 835
Query 834 AGTGATTCTCAAATGACTACAAGTAGAAGCACCAATCCATATCACTTAACAATGGTTCCA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AGTGATTCTCAAATGACTACAAGTAGAAGCACCAATCCATATCACTTAACAATGGTTCCA 895
Query 894 ACCATTGGGATTGTTGTTACAGCTGTTGCTCTTACGCTGCTCGTAGTCCTGGTAATTCTT 953
|||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||
Sbjct 896 ACCATTGGGATTGTTGTTACAGCTGTTGCTCTTACGATGCTTGTAGTCTTGGTAATTCTT 955
Query 954 ATCCGTAGAAAAAACCGGGAACTCGATGAATCTGAGAGTTTGGATAAGAA-GTCAACAAA 1012
||||||||||| ||||||||||| |||||||||||||| ||||||| ||| |||||||||
Sbjct 956 ATCCGTAGAAAGAACCGGGAACTGGATGAATCTGAGAGCTTGGATA-GAAAGTCAACAAA 1014
Query 1013 ATCAGTTGCTTCTTCC-TTGCCTGTATTCAAGATTCATGAAGATGATTCTTCTTCAGCTT 1071
||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1015 ATCAGTTCCTTCTTCCCTT-CCTGTATTCAAGATTCATGAAGATGATTCTTCCTCAGCTT 1073
Query 1072 TCAGAAAATTCAGCTACAAGGAAATGACAAATGCAACGAATGATTTCAACACGGTGATTG 1131
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1074 TCAGAAAGTTCAGCTACAAGGAAATGACAAATGCAACAAATGATTTCAACACGGTTATCG 1133
Query 1132 GTCAGGGAGGTTTTGGTACTGTTTACAAAGCCGAGTTCAGCGACGGTCTGATTGCAGCGG 1191
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1134 GTCAGGGAGGTTTTGGTACTGTTTACAAAGCCGAGTTCAACGATGGTCTGATTGCAGCGG 1193
Query 1192 TGaaaaaa-aTGAACAAAGTCTCTGATCAAGCTGAACAAGATTTTTGTAGAGAGATAGGG 1250
| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1194 T-AAAAAAGATGAACAAAGTCTCTGAACAAGCTGAACAAGATTTTTGTAGAGAGATAGGG 1252
Query 1251 CTTTTAGCTAAGCTGCATCACCGTAACCTTGTTGCTTTGAAAGGCTTTTGCATTAACAAG 1310
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1253 CTTTTAGCTAAGCTGCATCACCGTAACCTCGTTGCTTTGAAAGGCTTTTGCATCAACAAG 1312
Query 1311 AAAGAAAGGTTCTTGGTCTATGACTATATGGAAAATGGCAGCTTAAAAGATCATTTACAT 1370
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||
Sbjct 1313 AAAGAAAGGTTCTTGGTCTACGACTATATGAAAAATGGCAGCTTAAAAGATCACTTACAT 1372
Query 1371 GCCACTGGAAAGCCTCCACCTAGTTGGGGAACAAGAATGAAAATTGCAATTGATGTGGCA 1430
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GCCATTGGAAAGCCTCCACCTAGTTGGGGAACAAGAATGAAAATTGCAATTGATGTGGCA 1432
Query 1431 AATGCTTTGGAATATCTTCATTTCTACTGTGATCCTCCTCTGTGTCATAGAGACATTAAA 1490
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1433 AATGCTTTGGAATATCTTCATTTCTACTGTGATCCTCCTCTCTGTCATAGAGATATTAAA 1492
Query 1491 TCAAGCAATATATTACTCGATGAGAACTTCGTTGCTAAGCTTTCAGATTTTGGCCTTGCA 1550
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1493 TCAAGCAATATATTACTCGATGAGAACTTCGTCGCTAAGCTTTCAGATTTTGGCCTTGCA 1552
Query 1551 CATTCGTCTAGAGATGGCTCTGTTTTCTTTGAGCCTGTGAATACCGATATCCGTGGAACT 1610
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1553 CATTCGTCTAGAGATGGCTCTGTTTGCTTTGAGCCTGTGAATACCGATATCCGTGGAACT 1612
Query 1611 CCAGGTTATGTAGATCCAGAATATGTAGTAACGCAAGAGCTGACAGAGAAGAGTGATGTG 1670
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1613 CCAGGTTATGTAGATCCGGAATATGTAGTAACGCAAGAGTTGACAGAGAAGAGTGATGTG 1672
Query 1671 TACAGCTACGGAGTTGTGTTGCTGGAGCTCATAACCGGGAGAAGAGCAGTCGATGAAGGC 1730
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1673 TACAGCTACGGAGTTGTGTTGCTGGAGCTCATAACCGGGAGAAGAGCAGTTGATGAAGGT 1732
Query 1731 AAGAACCTTGTGGAAATGTCTCAGCGAAATTTGTTGACGAAATCAAACCACCGGGATTTG 1790
| |||||||||||||||||||||||| ||||||| |||||||||| |||| || |||
Sbjct 1733 AGGAACCTTGTGGAAATGTCTCAGCGGTTTTTGTTGGCGAAATCAAAACACCTCGAGTTG 1792
Query 1791 GTAGACCCGAGAATCAAAGACTCCATTGATGATGCTGGAAGAAAAGAGCTTGAAGCAGTT 1850
||||||||||||||||||||||| ||| ||||||||||| ||||| | ||||| ||||||
Sbjct 1793 GTAGACCCGAGAATCAAAGACTCTATTAATGATGCTGGAGGAAAACAACTTGATGCAGTT 1852
Query 1851 GTGGCGGTTGTGAGATGGTGTACCGAGAAAGAAGGCCGATCTAGGCCATCGATTAAACAA 1910
||| |||||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1853 GTGACGGTTGTGAGATTGTGTACCGAGAAAGAAGGCCGGTCTAGGCCATCAATTAAGCAA 1912
Query 1911 GTCCTGAGGCTGTTGTGTGAAAGCTGTGATCAGTTGCATAGTGCATTTGCTAAAGCGGTT 1970
||| ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 1913 GTCTTGAGGCTGTTGTGTGAAAGCTGTGATCCGGTGCATAGCGCATTTGCTAAAGCGGTT 1972
Query 1971 GAGGAAGAGATAGGCTGGGATAGTAGGAAGAGAAGCAATTTGAGAATTCAAAGAGGCGAT 2030
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1973 GAAGAAGAGATAGGCTGGGATAGTAGGAAGAGAAGCAATTTGAGAATTCAAAGAGGTGAT 2032
Query 2031 TCCCGGAT-TA------AT-G----G-ACAACTT--A----A--TTACAGCCGTAGTTTA 2069
|||||||| | || | | || |||| | | ||||||||| ||||||
Sbjct 2033 TCCCGGATCTTTGGTCCATCGTCTAGTACTACTTCCAGGTCACATTACAGCCGGAGTTTA 2092
Query 2070 CCTCACTCTCCAATTAATGGACTTTCTTTCTGAGTTAAGTCACATCT-CT--ATAGCTAA 2126
||||||||||||||||| ||| ||||||||||||||| ||||||||| || ||||||||
Sbjct 2093 CCTCACTCTCCAATTAACGGATTTTCTTTCTGAGTTA-GTCACATCTTCTCTATAGCTAA 2151
Query 2127 ATAGGAAAGTTT-ACATATATATATGAAAATTATGAATTCATATTGAAAGCT 2177
|| |||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 2152 ATCTGAAAGTTTTACATATGTTTATGAAAATTATGAATTCATATTGAAAGCT 2203
> AT1G49720.2 | Symbols: ABF1 | abscisic acid responsive element-binding
factor 1 | chr1:18400092-18402628 FORWARD LENGTH=1589
Length=1589
Score = 111 bits (60), Expect = 2e-23
Identities = 81/90 (90%), Gaps = 5/90 (6%)
Strand=Plus/Minus
Query 2092 TTTCTTTCTGAGTTAAGTCACA---TCTCTATAGCTAAATAGGAAAG-TTTACATATATA 2147
|||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||| |
Sbjct 1589 TTTCTTTCTGAGTT-AGTCACATCTTCTCTATAGCTAAATCTGAAAGTTTTACATATGTT 1531
Query 2148 TATGAAAATTATGAATTCATATTGAAAGCT 2177
||||||||||||||||||||||||||||||
Sbjct 1530 TATGAAAATTATGAATTCATATTGAAAGCT 1501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107981372295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5