BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474107
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49750.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1812 0.0
AT3G19320.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 688 0.0
> AT1G49750.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr1:18410929-18412801 REVERSE LENGTH=1755
Length=1755
Score = 1812 bits (981), Expect = 0.0
Identities = 1185/1281 (93%), Gaps = 24/1281 (2%)
Strand=Plus/Plus
Query 200 cctcctccacctcc---ccctcctccatgccctcctcctcctccatgccctcctgctcca 256
||| |||| ||||| |||||||||| |||| ||||||||||| |||||||| |||||
Sbjct 242 CCTTCTCCCCCTCCATGCCCTCCTCCA--CCCT-CTCCTCCTCCAAGCCCTCCTCCTCCA 298
Query 257 CAGCTTCCACCGCATCCACCACCGCATCCACCACCT--A-CGCCT-AA--GAAG-C--CG 307
||||||||| | | ||| |||| || ||| || ||| | ||||| || || | ||
Sbjct 299 CAGCTTCCA-C-C-TCCTCCACAGCTTCCGCCGCCTGCACCGCCTAAACCCCAGCCATCG 355
Query 308 CCGCCAACACCTGATCTACAGTTTGCGAGCTCACTAATAAAGAAAGTCTATCCAGTTCTG 367
||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||
Sbjct 356 CCGCCAACACCTGATCTACCGTTTGCGAGCTCATTATTAAAGAAAGTCTATCCAGTTCTC 415
Query 368 CAAAGATTCAAGGATCTAGTCGCAGATGATAAACTTAAGTCTTGGGAAGGACCCGACATT 427
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 416 CAAAGATTTAAGGATCTAGTCGCAGATGATAAACTTAAGTCTTGGGAAGGCCCCGACATT 475
Query 428 TGCAACAAATACCTCGGACTCAAATGTGCGATTTTTCCAGGAACCACCG-ATCTCGCACT 486
|||||||||||||||||||||||||| || | |||||| | || || | ||||||||||
Sbjct 476 TGCAACAAATACCTCGGACTCAAATGCGCCA-TTTTCCCGAAAACAAAGCATCTCGCACT 534
Query 487 CGGGATCGTCAAGTTTAATGGGTTAAAATTGAGAGCCAAGAGAGGCAAGAAACTCCTGTT 546
|| || |||| |||||||||||||||| ||||||| ||||| |||||||| ||| |||
Sbjct 535 CGCGAGCGTCCAGTTTAATGGGTTAAACTTGAGAGGCAAGATAGGCAAGATCCTCAAGTT 594
Query 547 AGATAGCTTCCTCGACAAGTTAGAAGAAGTCACCATCTTCCACGCAAACTCCAACGATTT 606
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 595 AGATAACTTCCTCGACAAGTTAGAAGAAGTCACCATCTTCCACGCAAACTCCAACGGTTT 654
Query 607 CATAGGCTCTGTGCCTGACATCAGCAAGTTGACATACTTATTCGAGCTCGATCTAAGCAA 666
|| ||||||||||||||| ||||||| |||| || ||||| ||||||||||||||||||
Sbjct 655 CACAGGCTCTGTGCCTGATTTCAGCAATTTGAAATTCTTATACGAGCTCGATCTAAGCAA 714
Query 667 CAACAAACTCACCGGAGATTTCCCAACCAATGTCTTG-ATGAAAAACAATCTCACGTTTC 725
|||||||||||| |||||||||||||| | ||||||| | | |||||||||||||||||
Sbjct 715 CAACAAACTCACAGGAGATTTCCCAACTAGTGTCTTGAAAG-GAAACAATCTCACGTTTC 773
Query 726 TTGATCTCAGGTTCAA-TCAGTTCTCAGGCTCTGTTCCTCCTCAGGTCTTTAATCTCGAC 784
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 774 TTGATCTCAGGTTCAATTC-TTTCTCAGGCTCTGTTCCTCCTCAGGTCTTTAATCTCGAC 832
Query 785 CTTGATGTCTTGTTCATCAACAACAACAATCTTGTTCAGAAGCTTCCAAGCAATCTTGGA 844
|| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 833 CTCGACGTCTTGTTCATCAACAACAACAATCTTGTTCAGAAGCTTCCACTCAATCTTGGA 892
Query 845 TCCATCACTGCTCTTTACCTCACCTTCGCCAACAACAGGTTCACGGGTTCAATACCCGAG 904
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 893 TCCATCACTGCTCTTTACCTCACCTTCGCCAACAACAGGTTCACGGGTCCAATTCCCGAA 952
Query 905 AGCATAGGCAACATCAAGTACCTACAAGAAGTCCTTTTCTTGAATAACCAGTTAACCGGA 964
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 953 AGCATAGGCAACATCAAGTACCTACAAGAAGTCCTTTTCCTGAATAACAAGTTAACCGGA 1012
Query 965 TGCTTACCGTACCAAATCGGAAACCTAACCCGAGCCACTGTTTTCGATGTTGGGTTCAAC 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TGCTTACCGTACCAAATCGGAAACCTAACCCGAGCCACTGTTTTCGATGTTGGGTTCAAC 1072
Query 1025 CAATTAACCGGTCCAATACCGTACTCTTTCGGTTGCTTAGAAACGATGGAACAACTCAAT 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CAATTAACCGGTCCAATACCGTACTCTTTCGGTTGCTTAGAAACGATGGAACAACTCAAT 1132
Query 1085 TTAGCCGGAAACAAGTTCTATGGAACCATACCGGAGATCGTATGCGAGATTGCTTGTCTC 1144
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1133 TTAGCCGGAAACAAGTTCTATGGAACCATACCGGAGATTGTATGCGAGATTGCTTGTCTC 1192
Query 1145 AAAAACGTTTCTCTCTCGTATAATTACTTCACTCAGGTTGGTCCGAAATGTAGAAAACTC 1204
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 CAAAACGTTTCTCTCTCGAATAATTACTTCACTCAGGTTGGTCCGAAATGTAGAAAACTC 1252
Query 1205 ATCAAGAGAAACATTATGGACGTTAGTATGAATTGTATACTTGATCTTCCAAACCAGAAA 1264
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 ATCAAGAGAAAAATTATGGACGTTAGTATGAATTGTATACTTGATCTTCCAAACCAGAAA 1312
Query 1265 ACGCCATCGGAGTGTGCTAAGTTCTTCATGCGGAAACAGACTTGTCTTAATTCCAAGTCT 1324
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1313 ACGCCATCGGAGTGTGCTAAGTTCTTCATGCGGAAACAGACTTGTCCTAATTCCAAGTCT 1372
Query 1325 TTGTTTACTGTCCCTTGTGGTAAGAATCCAAACAGGGTTAAACCGGATCAAGAACAATTG 1384
||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| ||||
Sbjct 1373 TTGTTTACTGTCCCTTGTGATAAGAATCCAAACCGGGGTAAACCGGATCAAGAACGATTG 1432
Query 1385 GAGGACGAAAAAGCTCGAGTTTCTCATTCGGTATCTTACAACACACTTAACCCGGACCGG 1444
||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1433 GAGGAGGAAAAAGCTCAAGTTTCTCATCCGGTAACTTACAACACACTTAACCCGGACCGG 1492
Query 1445 ATTCGGAATCTATAACCTTGG 1465
||||||||||||||||||||
Sbjct 1493 CTTCGGAATCTATAACCTTGG 1513
Score = 346 bits (187), Expect = 4e-94
Identities = 227/245 (93%), Gaps = 8/245 (3%)
Strand=Plus/Plus
Query 1 ACCACAAAAtctcatcaactcaatggcttcaattctctcaattcttcttctcattctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCACAAAATCTCATCAACTCAATGGCTTCAATTCTCTCAATTCTTCTTCTCATTCTTTC 60
Query 61 actttctaatctccacttcacttTA-CCTACCGGAAACAGCCACATTAACGACAGAAAAT 119
|||||| |||||||||||||||| | || |||||||||| ||||||||||||||||||||
Sbjct 61 ACTTTCAAATCTCCACTTCACTTCAACC-ACCGGAAACAACCACATTAACGACAGAAAAT 119
Query 120 CCTTAGAAATCATTATCGGTGGTGGTGACGACGGCAATCCTCCACCGTCACC------GG 173
|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 120 CCTTAGAAATCATTATCGGTGGTGGTAACGACAACAATCCTCCACCGTCACCTTCACCGG 179
Query 174 AACCGGAACCAGAACCTGCAGATTGccctcctccacctccccctcctccatgccctcctc 233
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 180 AACCAGAACCAGAACCTGCAGATTGCCCTCCTCCCCCTCCTCCTCCTCCATGCCCTCCTC 239
Query 234 ctcct 238
| |||
Sbjct 240 CACCT 244
Score = 239 bits (129), Expect = 7e-62
Identities = 170/189 (90%), Gaps = 5/189 (3%)
Strand=Plus/Plus
Query 1475 AGCCAAGTTGTTTATAATTTGAGGTGTCTAATGCAATATAAAAGAATAAATGTATTTGTA 1534
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1565 AGCCAAGTTGTTTATAATTTGAGGTGTCTAATGCAATATAAGTGAATAAATGTATT-GTA 1623
Query 1535 GTTGTGTACTTTCGGATCATCACTATATGTATTTTCATTGTTGTTTAATCCATCCTT-T- 1592
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct 1624 GTTGTGTACTTTCGGATCATCACTATATGTATTTTCATTGATGTATAATCCATCCTTCTG 1683
Query 1593 TCTTAA-TAAA-ACATCTTGTTTTGTATGAATCACTGCAAACTTGTTCATCCAATGGTGG 1650
| || | |||||||| ||||| |||||||||| ||| ||||||||||||||||||
Sbjct 1684 TTTTTTCTTTGTACATCTTGCTTTGTGTGAATCACTGTAAAATTGTTCATCCAATGGTGG 1743
Query 1651 ATATCATCG 1659
|||||||||
Sbjct 1744 ATATCATCG 1752
> AT3G19320.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr3:6696395-6698073 REVERSE LENGTH=1482
Length=1482
Score = 688 bits (372), Expect = 0.0
Identities = 763/946 (81%), Gaps = 49/946 (5%)
Strand=Plus/Plus
Query 530 GGCAAGAAACTCCTGTTAGATAGCTTCCTCGACAAGTTAGAAGAAGTCACCATCTTCCAC 589
||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||| |||
Sbjct 562 GGCAAGAAACTCCGGCTAGATAACTTCCTCAACAAGTTAGAAGAAGTCACCATCTTTCAC 621
Query 590 GCAAACTCCAACGATTTCATAGGCTCTGTGCCTGACATCAGCAAGTTGACA-TA-CTTAT 647
|||||| ||| |||| | |||||||| || || ||||||| |||| | || ||| |
Sbjct 622 GCAAACAGTAACAATTTTGTGGGCTCTGTTCCAAACTTCAGCAAATTGA-AGTACCTT-T 679
Query 648 TCGAGCTCGATCTAAGCAACAACAAACTCACCGGAGATTTCCCAACCAATGTCTTGATGA 707
||||||| ||||| |||||||| || ||| | ||||| ||||||| | ||| || | |
Sbjct 680 TCGAGCTTGATCTCAGCAACAATAAGCTCTCTGGAGAGTTCCCAAGCTCTGTGTT-A--A 736
Query 708 AA--AAC-AATCTCACGTTTCTTGATCTCAGGTTCAA-TCAGTTCTCAGGCTCTGTTCCT 763
|| ||| || ||||||||||| |||||||| ||||| || ||||| || ||||| |||
Sbjct 737 AAGCAACGAACCTCACGTTTCTCGATCTCAGATTCAATTC-TTTCTCCGGTTCTGTCCCT 795
Query 764 CCTCAGGTCTTT-AATCTCGACCTTGATGTCTTGTTCATCAACAACAACAATCTTGTTCA 822
|||||||| ||| ||||| ||||| || || |||||||||||||||||||||||||||||
Sbjct 796 CCTCAGGT-TTTCAATCTAGACCTCGACGTATTGTTCATCAACAACAACAATCTTGTTCA 854
Query 823 GA-AGCTTCCAAGCAA-TCTTGGATCCATCACTGCTCTTTACCTCACCTTCGCCAACAAC 880
|| | || || | || ||||||||| ||||| |||||||||||||| ||||| || |||
Sbjct 855 GAGA-CTCCCT-GAAAATCTTGGATCGATCACCGCTCTTTACCTCACATTCGCTAATAAC 912
Query 881 AGGTTCACGGGTTCAATACCCGAGA-GCATAGGCAACATCAAGTACCTACAAGAAGTCCT 939
|| ||||| ||| | || || | || |||| || ||||||||| |||||||||||||||
Sbjct 913 AGATTCACAGGTCCTATTCCGG-GAAGCATTGGTGACATCAAGTCCCTACAAGAAGTCCT 971
Query 940 TTTCTTGAATAACCAGTTAACCGGATGCTTACCGTACCAAATCGGAAACCT-AACCCGAG 998
||||||||||||| ||||||| || ||||||||||||||||| || ||||| |||| |||
Sbjct 972 TTTCTTGAATAACAAGTTAACTGGTTGCTTACCGTACCAAATTGGGAACCTTAACC-GAG 1030
Query 999 CCACTGTTTTCGATGTTGGGTTCAACCAATTAACCGGTCCAATACCGTACTCTTTCGGTT 1058
| || ||||||||||||| ||| ||||| ||||||||||| || |||||||||||||| |
Sbjct 1031 CTACGGTTTTCGATGTTGAGTTAAACCAGTTAACCGGTCCGATTCCGTACTCTTTCGGAT 1090
Query 1059 GCTTAGA-AACGATGGAACAACTCAATTTAGCCGGAAACAAGTTCTATGGAACCATACCG 1117
|| || | || |||||| || || ||||| || ||||||| ||||| || || ||||||
Sbjct 1091 GCCTAAAGAA-GATGGAGCAGCTGAATTTGGCTAGAAACAATTTCTACGGTACTATACCG 1149
Query 1118 GAGATCGTATGCGAGAT-TGCTTGTC-TCAAAAACGTTTCTCTCTCGTATAATTACTTCA 1175
||||| || |||||| | | | | | |||| ||| ||||||||||||| ||||||||||
Sbjct 1150 GAGATTGTCTGCGAGCTCT-CA-GCCCTCAAGAACCTTTCTCTCTCGTACAATTACTTCA 1207
Query 1176 CTCAGGTTGGTCCGAAATGTAGAAAACTCATCAAGAGAAACATTATGGACGTTAGTATGA 1235
| ||||| ||||| |||||| ||| |||||||||||| || ||| | || || ||||||
Sbjct 1208 CACAGGTCGGTCCAAAATGTCGAACACTCATCAAGAGGAAGATTCTTGATGTGGGTATGA 1267
Query 1236 ATTGTATACTTGATCTTCCAAACCAGAA-AACGCCATCGGAGTGTGCTAAGTTCTTCATG 1294
||||||| || |||||| | || || || ||| |||| ||| || || ||||| ||| ||
Sbjct 1268 ATTGTATTCTAGATCTTACGAATCA-AAGAACACCATGGGAATGCGCCAAGTTTTTCTTG 1326
Query 1295 CGGAAACAGACTTGTCTTAA-TTCCAAGTCTTTGTTT-ACTGTCCCTTGTGGTAA-GAAT 1351
|||||||||| ||||| ||| || |||||||| ||| | | |||||||||| || || |
Sbjct 1327 CGGAAACAGAGTTGTCCTAACTTT-AAGTCTTTCTTTTA-TCTCCCTTGTGGCAAAGA-T 1383
Query 1352 CCAAACAGGGTTAAACCGGATCAAGAACAATTGGAGGACGAAAAAGCTCGAGT-TTCTC- 1409
|| || || ||||||||||||||||| || || ||| | || || ||| |
Sbjct 1384 CCCCACCGGATTAAACCGGATCAAGAAGGATC--AG-ACG-----G-TC-AGGCTTCGCC 1433
Query 1410 ATTCGGTATCTTACAACACACTTAACCCGGACCGGATTCGGAATCT 1455
| ||||||||||||| | |||||||| |||||||||||||||||
Sbjct 1434 AC-CGGTATCTTACAATGCTCTTAACCCAGACCGGATTCGGAATCT 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81977489985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5