BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474109
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49780.1 | Symbols: PUB26 | plant U-box 26 | chr1:18428906-1... 2137 0.0
AT3G19380.1 | Symbols: PUB25 | plant U-box 25 | chr3:6714392-67... 889 0.0
> AT1G49780.1 | Symbols: PUB26 | plant U-box 26 | chr1:18428906-18430319
REVERSE LENGTH=1414
Length=1414
Score = 2137 bits (1157), Expect = 0.0
Identities = 1244/1287 (97%), Gaps = 2/1287 (0%)
Strand=Plus/Plus
Query 1 aaaaaaaaTGCCGGGGAATTTAGAGCCGTTGGATCTCGGAATCCAAATACCATACCATTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 AAAAAAAATGCCGGGGAATTTAGAGCCGTTGGATCTCGGAATCCAAATACCATACCATTT 83
Query 61 CAGATGCCCAATCTCACTTGACCTAATGTCCGATCCCGTAACCATCTCCACCGGCCAAAC 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 84 CAGATGCCCAATCTCACTTGACCTAATGTCTGATCCCGTAACCATCTCCACCGGCCAAAC 143
Query 121 TTACGACCGAACCAGCATCGACTCATGGATCGCTATGGGCAACACCACTTGTCCTGTCAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 144 TTACGACCGAACCAGCATCGACTCATGGATCGCTATGGGCAACACCACTTGTCCAGTCAC 203
Query 181 ACGTGTCGCTCTCTCCGACTTCACTCTCATCCCTAACCACACTCTCCGCCGTCTTATCCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 ACGTGTCGCTCTCTCCGACTTCACTCTCATCCCTAACCACACTCTCCGCCGTCTTATCCA 263
Query 241 AGAATGGTGCGTCGCTAACCGCTCTAACGGCGTTGAACGGATTCCTACACCGAAACAACC 300
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 264 AGAATGGTGCGTCGCTAACCGCTCTAACGGCGTCGAACGGATTCCTACACCTAAACAACC 323
Query 301 GGCGGATCCAATCTCCGTTAGGTCTCTCCTTAGTCAAGCCTCCGCAATTACCGGAACTCA 360
|||||||||||||||||||||||| || || |||||||| ||||||||||||||||||||
Sbjct 324 GGCGGATCCAATCTCCGTTAGGTCACTTCTCAGTCAAGCATCCGCAATTACCGGAACTCA 383
Query 361 CGTCTCTGTTCGCTCACGCGCCGCCGCGATTCGTCGTTTGAGAGGATTAGCTAGAGATAG 420
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 384 CGTCTCTGTTCGTTCACGCGCCGCCGCTATTCGTCGTTTGAGAGGATTAGCTAGAGATAG 443
Query 421 TGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGAGAGATTTTGGTGAGGATTTT 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 444 TGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGGGAGATTTTGGTGAGGATTTT 503
Query 481 GTTCGCCGATGTTGAAACGACGTCGTCGTCGTCGGAGCTTGTTTCTGAGTCGCTTGCTCT 540
|||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 504 GTTCGCCGATATTGAAACGACGTCGTTGTCTTCGGAGCTTGTTTCTGAGTCGCTTGCTCT 563
Query 541 TTTGGTTTTATTGCATATGACGGAGACGGAGTGTGAAGCTATTGCGTCGGATCCGGGTCG 600
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 564 TTTGGTTTTATTGCATATGACGGAGACGGAGTGTGAAGCTGTTGCGTCGGATCCTAGTCG 623
Query 601 GGTCGGGTTTATGACCCGGTTGTTGTTTGATTCTTCGATTGAAATTAGGGTTAACGCCGC 660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 624 GGTCGGGTTTATGACCCGATTGTTGTTTGATTCTTCGATTGAAATTAGGGTTAACGCCGC 683
Query 661 CGCGTTGATTGAGATGGTGTTGACCGGTTCGAAATCGATGGATCTGAAACTGATAATTTC 720
||||||||||||||||||||||||||| ||||||| |||||||||||| |||| |||||
Sbjct 684 CGCGTTGATTGAGATGGTGTTGACCGGAGCGAAATCCATGGATCTGAAATTGATCATTTC 743
Query 721 CGGATCCGATTCGATTTTCGAAGGCGTTCTCGATCTTCTCAAGAATCCGATTTCATCGCG 780
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 CGGATCTGATTCGATATTCGAAGGCGTTCTCGATCTTCTCAAGAATCCGATTTCATCGCG 803
Query 781 GCGAGCTTTGAAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCTCGTGAAACAAACGAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 GCGAGCTTTGAAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCTCGTGAAACAAACGAG 863
Query 841 ACATCTCGCGATCTCCGCCGGAGCTCCGGGGATTTTAATCGACCGTCTCGCGGCGGATTT 900
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 ACATCTAGCGATCTCCGCCGGAGCTCCGGGGATTTTAATCGACCGTCTCGCGGCGGATTT 923
Query 901 CGATAGATGTGATACAGAGCGGGGTTTAGCGACGGTGGAGCTTCTCTGCCGGTTACCGGA 960
|||||| |||||||| ||||| ||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 924 CGATAGGTGTGATACGGAGCGAGGTTTAGCGACAGTGGAGCTTCTTTGCCGATTACCAGA 983
Query 961 AGGATGTGCTGCGTTTGGTGAGCATGCTTTGACGGTGCCGCTAATGGTGAAGACGATATT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 AGGATGTGCTGCGTTTGGTGAGCATGCTTTGACGGTGCCGCTAATGGTGAAGACGATATT 1043
Query 1021 GAGAGTTTCGGAAAGAGCGACGGAGTACGCGGCGGGAGCGTTGTTGGCTTTGTGTACGGC 1080
|||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1044 AAGAGTTTCAGATAGAGCGACGGAGTACGCGGCGGGAGCGTTGTTGGCTTTATGTACGGC 1103
Query 1081 GGAGGAACGGTGTAGAGATGAGGCAGCGGCGGCGGGATTGGTGACGCAGTTGTTGCTAT- 1139
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 1104 GGAGGAACGGTGTAGAGATGAAGCTGCGGCGGCGGGATTGGTGACGCAGTTGTTGCT-TC 1162
Query 1140 TGGTGCAGAGTGATTGTACGGAGAGAGCGAAGAGAAAAGCTCAGATGCTTTTGAAGCTTC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 TGGTGCAGAGTGATTGTACGGAGAGAGCGAAGAGAAAAGCTCAGATGCTTTTGAAGCTTC 1222
Query 1200 TCAGAGATTCTTGGCCTGACGATTCTACCGTTAATTCCGACGATTTCAATCGTAGCGAAG 1259
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1223 TCAGAGACTCTTGGCCTGACGATTCTACCGTTCATTCCGACGATTTCAATCGTAGCGAAG 1282
Query 1260 TGGCGCCGTTTTGAGtttttttttttt 1286
|||||||||||||||||||||||||||
Sbjct 1283 TGGCGCCGTTTTGAGTTTTTTTTTTTT 1309
> AT3G19380.1 | Symbols: PUB25 | plant U-box 25 | chr3:6714392-6716099
REVERSE LENGTH=1708
Length=1708
Score = 889 bits (481), Expect = 0.0
Identities = 999/1242 (80%), Gaps = 64/1242 (5%)
Strand=Plus/Plus
Query 7 aaTGCCGGGGAATTTAGAGCCGTTGGATCTCGGAATCCAAATACCATACCATTTCAGATG 66
|||||| ||||| |||| || |||||||| ||||||||||||||||| |||||||||||
Sbjct 232 AATGCCTAGGAATATAGAACCATTGGATCTTGGAATCCAAATACCATATCATTTCAGATG 291
Query 67 CCCAATCTCACTTGACCTAATGTC-CGATCCC-GTAACCATCTCCACCGGCCAAACTTAC 124
||||| ||||| || || ||| | || ||| || ||| ||| |||||||||||| |||
Sbjct 292 TCCAATATCACTCGAACTTATG-CAAGA-CCCAGTCACCGTCTGCACCGGCCAAACCTAC 349
Query 125 GACCGAACCAGCATCGACTCATGGATCGCTAT-GG--GCAACACCACTTGTCCTGTCACA 181
|||||| |||||||||| |||||| || | || || |||||| || ||||| ||||||
Sbjct 350 GACCGAGCCAGCATCGAGTCATGGGTCTCCATCGGTAACAACACGACATGTCCAGTCACA 409
Query 182 CGTG-TCGCTCTCTCCGACTTCACTCTCATCCCTAACCACACTCTCCGCCGTCTTATCCA 240
|| | || |||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 410 CGAGCTC-CTCTCTCCGACTTCACACTCATCCCTAACCACACTCTCCGTCGTCTCATCCA 468
Query 241 AGAATGGTGCGTCGCTAACCGCTCTAACGGCGTTGAACGGATTCCTACACCGAAACAACC 300
|||||||||||||||||||||||| || || || ||||| || ||||| || ||||||||
Sbjct 469 AGAATGGTGCGTCGCTAACCGCTCCAATGGAGTCGAACGTATCCCTACTCCTAAACAACC 528
Query 301 GGCGGATCCAATCTCCGTTAG-GTCTCTCCTTAGTCAAGCCTCCGCAATTACCGGAACTC 359
|| ||||||| ||| ||| | | |||| || ||||||||||| || || || ||||| |
Sbjct 529 AGCTGATCCAACCTCTGTTCGTG-CTCTTCTCAGTCAAGCCTCTGCTATAACAGGAACCC 587
Query 360 ACGTCTCTGTTCGCTCACGCGCCGCCGCGATTCGTCGTTTGA-GAGGATTAGCTAGAGAT 418
||||||||||||| |||||||||||||| | || ||||| | | || || ||| | |||
Sbjct 588 ACGTCTCTGTTCGTTCACGCGCCGCCGCTCTCCGCCGTTT-ACGTGGTTTCGCTCGTGAT 646
Query 419 AGTGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGAGAGATTTTGGTGAGGATT 478
||| || ||||||||||||||||| | ||||||||| | |||||||||| | | ||||
Sbjct 647 TCTGATAAAAATCGCGTTTTGATCGCAGCTCATAACGCTACAGAGATTTTGATTAAGATT 706
Query 479 TTGTTCGCCGATGTTGAAACGACGTCGTCGTCGTCGGAGCTT-GTTTCTGAGTCGCTT-G 536
||||| | || |||||||||||||| | || || || |||||||| || |
Sbjct 707 CTGTTCTC---TG---AAACGACGTCGTCG--G----AG-TTAGTCTCTGAGTCT-TTAG 752
Query 537 CTCTT-TTGGTTTTATTGCATATGACGGAGACGGA---GTGTGAAGCTAT-TGCGTCGGA 591
|||| ||| || | || | || |||||| || | || || | || | |||||||
Sbjct 753 CTCTACTTG-TTATGTTACCGATAACGGAGCCGAACCAGTTTGTTTCGATAT-CGTCGGA 810
Query 592 TCCGGGTCGGGTCGGGTTTATGACCCGGTTGTTGTTTGATTCTTCGATTGAAATTAGG-G 650
|||||||||||||| |||| ||||||||||||| || ||||| |||||||||| | | |
Sbjct 811 TCCGGGTCGGGTCGAGTTTTTGACCCGGTTGTTATTCGATTCGTCGATTGAAAC-ACGCG 869
Query 651 TTAACGCCGCCGCGTTGATTGAGATGGTGTT-GACCGGTTCGAAATCGATGGATCTGAAA 709
||||||||||||||||||| ||||| || || ||| || | |||||| ||| ||||||
Sbjct 870 TTAACGCCGCCGCGTTGATCGAGATTGT-TTCGACGGGAACCAAATCGGCGGACCTGAAA 928
Query 710 CTGATA-ATTTCCGGATCC-GATTC-GATTTTCGAAGGCGTTCTCGATCTTCTCAAGAA- 765
| | ||||| | || | || || | | |||||||| |||||||||||||| | |||
Sbjct 929 G-GTTCGATTTC-GAATTCAGAATCTG-TATTCGAAGGAGTTCTCGATCTTCTGA-GAAA 984
Query 766 TCCGATTTCATCGCGGCGAGCTTTGAAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCT 825
||||||||| || || |||||| | || |||||||||||| | | ||||| |||||| |
Sbjct 985 TCCGATTTCGTCACGACGAGCTCTCAAAATCGGAATCAAAACTCTGTTCGCGCTCTGT-T 1043
Query 826 C-GTGAAA-CAAACGAGACATC-TCGCGATCTCCGCCGGAGCTCCGGGGATTTTAATCGA 882
| |||||| | | || |||| | |||||||| | ||||| || |||| |||| |||| ||
Sbjct 1044 CAGTGAAATCGA-CGCGACA-CATCGCGATCACAGCCGGTGCGCCGGAGATTCTAATAGA 1101
Query 883 CCGTCTCGCGGCGGATTTCGATAGATGTGATACAGAGCGGGGTTTAGCGACGGTGGAGCT 942
| | ||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||
Sbjct 1102 CAGACTCGCGGCGGATTTCGATAGATGCGATACGGAGCGAGCCTTAGCGACGGTGGAGCT 1161
Query 943 TCTCTGCCGGTTACCGGAAGGATGTGCTGCGTTTGGTGAGCATGCTTTGACGGTGCCGCT 1002
|||||||| ||||||||||| || ||||| |||||||| ||||| ||||||||| |
Sbjct 1162 ACTCTGCCGAACGCCGGAAGGATGCGCGGCGTTCGGTGAGCACGCTTTAACGGTGCCGTT 1221
Query 1003 AATGGTGAAGACGATATTGAGAGTTTCGGAAAGAGCGACGGAGTACGCGGCGGGAGCGTT 1062
| || || |||||||||||||||||||| | ||||||||||| |||||||| |||||
Sbjct 1222 GTTAGTTAAAACGATATTGAGAGTTTCGGATCGCGCGACGGAGTATGCGGCGGGGGCGTT 1281
Query 1063 GTT-G-GCTTTGTGTACGGCGGAGGAACGGTGTAGAGATGAGGCAGCGGCGGCGGGATTG 1120
||| | ||||||| |||||||||||| |||| || || || || |||| ||||||| ||
Sbjct 1282 GTTAGCGCTTTGT--ACGGCGGAGGAAAGGTGGAGGGAGGAAGCGGCGGGGGCGGGAGTG 1339
Query 1121 GTGACGCAGTTGTTGCT-ATTGGTGCAGAGTGATTGTACGGAGAGAGCGAAGA-GAAAAG 1178
||| ||||||||| | || |||||||||||| ||||||||||||||||||| |||| |
Sbjct 1340 GTGGTACAGTTGTTGTTGAT-GGTGCAGAGTGAGTGTACGGAGAGAGCGAAGAAGAAA-G 1397
Query 1179 CTCAGATGCTT-TTGAAGCTTCTCAGAGATTCTTGGCCTGAC 1219
| |||| | || ||||||||||| |||||||| |||||||||
Sbjct 1398 CACAGAAG-TTATTGAAGCTTCTGAGAGATTCATGGCCTGAC 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63252686700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5