BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474111

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49800.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   503    6e-142


> AT1G49800.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male 
gametophyte, stamen; EXPRESSED DURING: 4 anthesis; Has 12 
Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr1:18438365-18438939 
REVERSE LENGTH=575
Length=575

 Score =  503 bits (272),  Expect = 6e-142
 Identities = 399/456 (88%), Gaps = 26/456 (6%)
 Strand=Plus/Plus

Query  1    ATCATGGTGATGGCTAAGAACCTTACCAAGTTCTACGTAGCGTTTCTCGTTATTCTGATA  60
            |||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| 
Sbjct  61   ATCATGGTGATGGCAAAGAACCTTACCAAGTTCTACGTAGTGTTTCTCGTTGTTCTGATG  120

Query  61   ATGGTGGGATCGGTGTTACTAGCCATTGAAGGACGACCGGTCAAGGATGGTTCGAGATCG  120
            ||||||| |||| | || |||||||||||||||||||||||||||||| |||||||||||
Sbjct  121  ATGGTGGTATCGCTATTGCTAGCCATTGAAGGACGACCGGTCAAGGATAGTTCGAGATCG  180

Query  121  ATGACACAATTGAGAGATTCATCTGTGTTTAATGGAAGCG---TAATGTCTTCGTTTAAA  177
             |||| ||| |||||||||||||| |||| ||||||||||   ||||||| || ||||||
Sbjct  181  TTGACCCAAATGAGAGATTCATCTATGTTCAATGGAAGCGTTATAATGTCCTCATTTAAA  240

Query  178  CCAGTCGAGTCTTCTGTACAAGATTTGTCGTGGTTAGCCACAGTGAAACAGTCCGGGCCA  237
            ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct  241  CCAGTTGAGTCTTCTGTAAAAGATTTATCGTGGTTAGCCACAGTGAAACAGTCCGGGCCA  300

Query  238  AGCCCAGGGATTGGGCATC---GAGCCAAGGGCTACAATATGTTTGGACGAGCCAAAGAT  294
            ||||||||| |||| ||||   |||||||||| ||||| ||||||||||||||||| |||
Sbjct  301  AGCCCAGGGGTTGGACATCATCGAGCCAAGGGGTACAAAATGTTTGGACGAGCCAATGAT  360

Query  295  TCTGGTCCTAGTCCTGGTGTTGGACACTA-A-AGTAACAAAC----CTCGTGAATTAAAA  348
            ||||||||||||||||||||||||||||| | | |||||||     ||| |||| | |||
Sbjct  361  TCTGGTCCTAGTCCTGGTGTTGGACACTAGATA-TAACAAATTAATCTCATGAACTGAAA  419

Query  349  TTATAGATAATGCAGAT-CA--TGT------T-T--AATAGCCTCTAAGATGTAATCttt  396
            ||||||||||||||||| ||  | |      | |  ||||||||||||||||||||||| 
Sbjct  420  TTATAGATAATGCAGATACAACTTTACCACATGTTCAATAGCCTCTAAGATGTAATCTTC  479

Query  397  ttttCCATTGTTTATGTTTATCTCCTTTACTTCTAC  432
            ||| ||||||||||||||||||| ||||||||||||
Sbjct  480  TTT-CCATTGTTTATGTTTATCTTCTTTACTTCTAC  514



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21715667568


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5