BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474113
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49820.1 | Symbols: ATMTK, MTK | S-methyl-5-thioribose kinas... 2372 0.0
> AT1G49820.1 | Symbols: ATMTK, MTK | S-methyl-5-thioribose kinase
| chr1:18442882-18445098 FORWARD LENGTH=1577
Length=1577
Score = 2372 bits (1284), Expect = 0.0
Identities = 1471/1557 (94%), Gaps = 30/1557 (2%)
Strand=Plus/Plus
Query 1 ATTGGCCACTGACATGAAACAAAACCAAAAGAAGAATCTTTTG-CAAAAATCGAACCTTT 59
||||| |||||| ||||||||||||| ||| |||||| |||| ||||||||||||||||
Sbjct 1 ATTGGTCACTGATATGAAACAAAACC-AAACTAGAATC-TTTGACAAAAATCGAACCTTT 58
Query 60 AAAACTCAGA-TTTATCTCTC--CAGTCTCCACACTGCTTGAAACTGAAGCAGAGAAGCA 116
|||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 59 AAAACTCAGATTTTATCTCTCTTCAGTCTCCACGCTGCTTGAAACTGAAGCAGAGAAGCA 118
Query 117 AA-ACGATGTCTTTTGAGGAGTTTAAGCCATTAAACGAGAAGTCTCTTGTAGACTACATA 175
|| | |||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 119 AAGA-GATGTCTTTTGAGGAGTTTACGCCGTTAAACGAGAAGTCTCTTGTAGACTACATC 177
Query 176 AAGGCAACGCCTGCTCTCTCTTCCAAGATCGGAGCCGACAAGTCC---GATGATTTGGTT 232
||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 178 AAGTCAACACCTGCTCTCTCTTCCAAGATCGGAGCCGACAAGTCCGATGATGATTTGGTT 237
Query 233 ATCAAAGAAGTTGGAGATGGCAATCTCAATTTCGTTTTCATCGTTGTCGGATCCTCTGGT 292
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 ATCAAAGAAGTTGGAGATGGCAATCTCAATTTCGTTTTCATCGTTGTTGGATCCTCTGGT 297
Query 293 TCTCTTGTCATCAAACAGGCACTTCCATATATTCGCTGTATCGGTGAATCGTGGCCAATG 352
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 298 TCTCTTGTCATCAAACAGGCTCTTCCATATATTCGCTGTATCGGTGAATCATGGCCAATG 357
Query 353 ACGAAAGAAAGAGCTTATTTTGAAGCAACAACTTTGAGAAAGCATGGAAATTTATCACCT 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACGAAAGAAAGAGCTTATTTTGAAGCAACAACTTTGAGAAAGCATGGAAATTTATCACCT 417
Query 413 GATCATGTTCCTGAAGTCTACCATTTTGACAGAACAATGGCGTTGATCGGAATGAGATAC 472
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 418 GATCATGTTCCTGAAGTCTACCATTTTGACAGAACAATGGCGTTGATTGGAATGAGATAC 477
Query 473 CTCGAGCCTCCTCATATCATTCTCCGTAAAGGACTCATTGCCGGGATTGAGTATCCTTTC 532
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 478 CTTGAGCCTCCTCATATCATTCTCCGCAAAGGACTCATTGCTGGGATTGAGTATCCTTTC 537
Query 533 CTTGCAGACCACATGTCTGATTACATGGCGAAGACTCTCTTCTTCACTTCGCTCCTCTAT 592
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 538 CTCGCAGACCACATGTCTGATTACATGGCGAAGACTCTCTTCTTCACTTCTCTCCTCTAT 597
Query 593 CACGATACCACAGAGCACAGAAGAGCAGTAACTGAATTTTGTGGTAATGTGGAGTTATGC 652
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 598 CACGATACCACAGAGCACAGAAGAGCAGTAACCGAATTTTGTGGTAATGTGGAGTTATGC 657
Query 653 CGATTAACGGAGCAAGTTGTGTTTTCGGACCCATATAGAGTTTCTACATTTAATCGCTGG 712
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 658 CGATTAACGGAGCAAGTTGTGTTTTCGGACCCATATAGAGTTTCCACATTTAATCGTTGG 717
Query 713 ACTTCACCTTATCTTGATGATGATGCTAAGGCTGTGCGCGAAGACAGTGCCTTGAAGCTC 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACTTCACCTTATCTTGATGATGATGCTAAGGCTGTGCGCGAAGACAGTGCCTTGAAGCTC 777
Query 773 GAGATCGCAGAGCTTAAATCGATGTTCTGTGAAAGAGCTCAAGCTCTAATACATGGTGAT 832
|| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 778 GAAATCGCAGAGCTAAAATCGATGTTCTGTGAAAGAGCTCAAGCTTTAATACATGGTGAT 837
Query 833 CTTCACACTGGTTCTGTCATGGTTACTCAAGATTCGACACAAGTTATAGATCCAGAGTTT 892
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 838 CTTCATACTGGTTCTGTCATGGTTACTCAAGATTCAACGCAAGTTATAGATCCAGAGTTT 897
Query 893 TCGTT-TATTGGACCGATGGGTTTCGATATTGGAGCTTATCTTGGTAACTTGATACTAGC 951
||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 898 TCGTTCTA-TGGACCGATGGGTTTCGATATTGGCGCTTATCTTGGTAACTTGATACTAGC 956
Query 952 TTTCTTTGCACAAGATGGACACGCCGCTCAGGGAAATGATCGAAAAGAATACAAGCAGTG 1011
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 957 TTTCTTTGCACAAGATGGACACGCCACTCAGGAAAATGATCGAAAAGAATACAAGCAGTG 1016
Query 1012 GATCTTGAGAACCATTGAGCAAACTTGGGATTTGTTTAACAAAAGGTTCATTGCGCTATG 1071
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1017 GATCTTGAGAACCATTGAGCAAACTTGGAATTTGTTTAACAAAAGGTTCATTGCGCTATG 1076
Query 1072 GGATCAAAACAAAGATGGACCCGGCGAAGCATACCTTGCAGATATCTATAACAACCCCGG 1131
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1077 GGATCAAAACAAAGATGGACCAGGCGAAGCATACCTTGCAGATATCTATAACAATACCGA 1136
Query 1132 GGTTTTGCAGCTTGCTCAAGAAAACTACATGAGGAATTTGTTGCATGACTCACTCGGATT 1191
||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GGTTTTGAAGTTTGTTCAAGAAAACTACATGAGGAATTTGTTGCATGACTCACTCGGATT 1196
Query 1192 CGGCGCTGCAAAGATGATTAGGAGAATTGTGGGAGTGGCACATGTTGAGGACTTTGAATC 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CGGCGCTGCAAAGATGATTAGGAGAATTGTGGGAGTGGCACATGTTGAGGACTTTGAATC 1256
Query 1252 AATCGAAGAAGATAAGCGAAGAGCGGTTTGCGAGAGAAGTGCGCTCGAGTTTGCAAAGAT 1311
|||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 1257 AATCGAAGAAGATAAGCGAAGAGCTATTTGCGAGAGAAGTGCACTCGAGTTTGCGAAGAT 1316
Query 1312 GCTTCTTAAGGAAAGGAGAAAGTTTACTTGTATCGGTGAAGTTGTTTCAGCAATTCAACA 1371
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1317 GCTTCTCAAGGAAAGGAGAAAGTTTAAGAGTATCGGTGAAGTTGTTTCAGCAATTCAACA 1376
Query 1372 TCAAAGCTAAGACATTTTATAATGAAATGTTCTTCTGCTAAAGTTCTTGAAAGTCTTGTT 1431
||||||||||||| ||||||||| | | |||||||| ||||||||||||||||||||
Sbjct 1377 ACAAAGCTAAGACAATTTATAATG---T-T-CTTCTGCTGAAGTTCTTGAAAGTCTTGTT 1431
Query 1432 TTGGATCTTGG-AGTTAATTGCCAAGAAAAATATCACAATGCTGGAGTTATCACATGGAT 1490
||| ||||||| ||||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct 1432 TTG-ATCTTGGGAGTTAATTGGCAAGAAAAGTATCACAATGCTGC--TTATCACATGGAT 1488
Query 1491 ATGTAATTTGGTGGTTTGTGCCTTTGTGGTGGTGATGATAGTATTCAAATGCATTTT 1547
|||||||| |||||||||| |||||| ||||| |||||||||||||||||
Sbjct 1489 TTGTAATTTAGTGGTTTGTG-----GTGGTGATGATG---GTATTCAAATGCATTTT 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76355028945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5