BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474117
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49860.1 | Symbols: ATGSTF14, GSTF14 | glutathione S-transfe... 1075 0.0
> AT1G49860.1 | Symbols: ATGSTF14, GSTF14 | glutathione S-transferase
(class phi) 14 | chr1:18458666-18459906 FORWARD LENGTH=985
Length=985
Score = 1075 bits (582), Expect = 0.0
Identities = 743/819 (91%), Gaps = 17/819 (2%)
Strand=Plus/Plus
Query 1 ATAACTAAGT-TAGTAAATAGACAAAGAAATCAACATGGCTGATTCGAAGATGAAGCTCC 59
|||||||| | ||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 11 ATAACTAA-TCTAGTAAATAGACAAAGAAAACAACATGGCTGATTCTAAGATGAAGCTCC 69
Query 60 ACTGTGGCTGGT-TCT-TTTTAAATTCGGCAGCTCTCTTTGGTATCAATGAGAAAGGTCT 117
||||||||| | ||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 70 ACTGTGGCT-TTATCTGGGGT-AATTCGGCAGCTCTCTTTTGTATCAATGAGAAAGGTCT 127
Query 118 AGACTTTGAGCTGGTATTCGTAGATTGGCTTGCTGGTGAAGCCAAAACCAAAACTTTTCT 177
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TGACTTTGAGCTTGTCTTCGTAGATTGGCTTGCTGGTGAAGCCAAAACCAAAACTTTTCT 187
Query 178 CTCTACTCTCAACCCATTTGGTGAAGTCCCGGTTCTTGAAGATGGAGATCTCAAACTTTT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 CTCTACTCTCAACCCATTTGGTGAAGTCCCGGTTCTTGAAGATGGAGATCTCAAACTTTT 247
Query 238 CGGTACCAAAGGCGATCACGGCATCACGCGATACCTAGCGGAGCAGTACAAAGACATTGG 297
| | |||||| | | | | ||||||||||||||||| ||||| ||||||||| ||||
Sbjct 248 C-GAACCAAA-G-G----C-G-ATCACGCGATACCTAGCCGAGCAATACAAAGACGTTGG 298
Query 298 AACAAATCTATTACCAGATGATCCCAAAAAGAGAGCAATCGTGTCCATGTGGATGGAAGT 357
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 299 AACAAATCTATTACCAGATGATCCCAAAAAGAGAGCAATCATGTCGATGTGGATGGAAGT 358
Query 358 AGATACCAATCAATTTCTTCCTATAGCATCAACACTCATCAAAGAACTCATGATAAAACC 417
||||| ||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 359 AGATAGCAATCAATTTCTTCCTATAGCATCAACACTCATCAAAGAACTCATCATCAATCC 418
Query 418 ATATCAAGGTTTAGCCACCGATGTTGCATCAGTTCAAGAAAACCAAGAGAAGTTATCAGA 477
|||||||||||||||||| || | | || |||||||||| ||| |||| |||||||||||
Sbjct 419 ATATCAAGGTTTAGCCACAGACGATACAGCAGTTCAAGAGAACAAAGAAAAGTTATCAGA 478
Query 478 GATTCTGAACATCTACGAGACTCGTTTAGGCGAGTCTCCTTACTTAGCCGGTGAAAGCTT 537
| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 479 GGTTCTGAACATCTACGAGACTCGTTTAGGCGAGTCTCCTTACTTGGCTGGTGAAAGCTT 538
Query 538 CACTTTAGCGGATCTTCATCATCTTCCACTGATTGATTACTTGTTGAACACAGAAGAAGA 597
|| |||||||||||| ||||||||| | | ||||||||||||||||||||| || |||||
Sbjct 539 CAGTTTAGCGGATCTGCATCATCTTGCGCCGATTGATTACTTGTTGAACACGGACGAAGA 598
Query 598 AGAATTGAAAAACTTGATCTATTCACGTCCCAATGTAGCCGCATGGGTCGATAAAATGAA 657
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 599 AGAGTTGAAAAACTTGATCTATTCACGTCCCAATGTAGCGGCATGGGTCGAGAAAATGAA 658
Query 658 GATGAGACCAGCTTGGCTAAAAACAGTCGTCATGAAAAATCACATCGTTGACTTGATGAA 717
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 659 AATGAGGCCAGCTTGGCTGAAAACAGTAGTCATGAAAAATCACATCGTTGACTTGATGAA 718
Query 718 GCAACGGCGTTTGCCTATAAGGTTAGATTCATCGTGTCATGAGTTAACTGTTGTCGCTCA 777
||| || ||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||
Sbjct 719 GCAGCGTCGTTTGCCTATAAAGTTAGATTCATCGTGTCATGAGTCAACCGTTGTGGCTCA 778
Query 778 GAAAACGGCGGTGGC-AGTTGGGAACAATTAAGTAAGCA 815
|||| ||| | || | ||| |||||| |||| |||||
Sbjct 779 AAAAAATGCGATCGCCA-TTGAGAACAAGTAAGCAAGCA 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5