BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474119
Length=2757
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49870.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 3552 0.0
AT2G22482.1 | Symbols: | | chr2:9549649-9550084 REVERSE LENGT... 135 2e-30
> AT1G49870.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 10 plant structures; EXPRESSED DURING:
F mature embryo stage, petal differentiation and expansion stage,
E expanded cotyledon stage, D bilateral stage; Has 6518
Blast hits to 5022 proteins in 522 species: Archae - 49; Bacteria
- 635; Metazoa - 3264; Fungi - 379; Plants - 242; Viruses
- 9; Other Eukaryotes - 1940 (source: NCBI BLink). | chr1:18460212-18463785
FORWARD LENGTH=2848
Length=2848
Score = 3552 bits (1923), Expect = 0.0
Identities = 2365/2568 (92%), Gaps = 72/2568 (3%)
Strand=Plus/Plus
Query 43 GATACAACAAATTTGAGGATATGATTAAAGCCGCCATGGATCTCGGTTGCTTGGATTTGG 102
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 GATACAGCAAAATTGAGGATATGATTAAAGCCGCCATGGATCTCGGTTGCTTGGATTTGG 173
Query 103 GATGTCTTTCTGACAAGAAAAGCGGCGTCGGAGTGTCCGATCATCTTGAATGTTCGTCTT 162
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 174 GATGTCTTTCTGACAAGAAAAGCGGCGTCGGTGTTTCCGATCATCTTGAGTGTTCGTCTT 233
Query 163 CACCTTCGAAACTTGGCAAGAATAAATCACCAAGAGAGGCATCATCTCTTAGAAAATCAC 222
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 234 CACCTTCGAAACTTGGCAAGAATAAATCACCAAGAGAGACATCAGCTCTTAGAAAATCAC 293
Query 223 AATCAAAGAGGTCTTCTCAACGTAAAACCTCATCACCTCTTGGCTGGTTCCCACGAACAA 282
||||||||||||||||||||||||||| | | ||||||||||| |||||||| |||| ||
Sbjct 294 AATCAAAGAGGTCTTCTCAACGTAAAA-C-C-TCACCTCTTGGTTGGTTCCCGCGAAGAA 350
Query 283 AGGGGGATTCCTACTTGAATAGGAAGATCAAGAAGCTACAGGAGGTTGGTGGAATGAATC 342
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 AAGGGGATTCCTACTTGAATAGGAAGATCAAGAAGCTACAGGAGGTTGGTGGAATGAATC 410
Query 343 AGACACTTGATGAGACTCTTGGCGACTCGAATCCACACTACTGCAAAATTGTAAGAGAAC 402
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 411 AGACTCTTGATGAGACTCTTGGCGATTCAAATCCACACTACTGCAAAATTGTAAGAGAAC 470
Query 403 AAATGGCTGTGAGAGAGGCTGCGGGTAAGGCTATGGAGCTCCGCAAAGCTGCACTGGTTG 462
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 471 AAATGGCTGTTAGAGAGGCTGCGGGTAAGGCTATGGAGCTTCGCAAAGCTGCTCTGGTTG 530
Query 463 AAGCATCGTGGTGTAGAATACTTCGTGCTGCTAGGATTCCAAGTTTAGAAGCAGAAACTT 522
||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 531 AAGCATCTTGGTGTAGAATACTTCGTGCTGCTAGGATTCCATGTTTGGAAGCAGAAACTT 590
Query 523 TGATGGAGAATGCAGAAAAGGCTGCGGTGGAAGCTTTTGAAGCGGCATCTGCAATGGGAG 582
||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 591 TGATGGAGAATGCAGAAAAAGCTGCAGTGGAAGCTTTTGAAGCGGCATCTGCGTTGGGAG 650
Query 583 TGATAATGCATGATAAACCAAATAGCTCAAGGAAACAATATCGAATCGAAACATCAGGAA 642
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 651 TGATAATGCATGATAAACCAAATAGCTCGAGGAAACAATATCGAATTGAAACATCAGGTA 710
Query 643 CACATGGAAGGGGATCTCCTACTCATACCGTTACAGCATCTTTTGAAACTGCTTTTGATG 702
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 711 CACATGGAAGGGGATCTCCTACTCATACCGTTACAGCATCTTTTGAAACTGCGTTTGATG 770
Query 703 TAGATAAAGAAGTAGCAGCTGCTGTTAAAACTGCATTTGCTAGGCTTGCAAATTGCCCCT 762
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TTGATAAAGAAGTAGCAGCTGCTGTTAAAACTGCATTTGCTAGGCTTGCAAATTGCCCCT 830
Query 763 CTCTTAGTAAAGCTGAGTTTAAAGACCTTCTGAAGAAAATCAGCGAGAATCCTGATGTGC 822
|| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 CTTTTAGCAAAGCTGAGATTAAAGACCTTCTGAAGAAAATCAGCGAGAATCCTGATGTGC 890
Query 823 GTGATAATCATGAGATTACTGAGATGTCTTCAGAATGCGACACAGAGTCCGATTCTGAGC 882
|||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |
Sbjct 891 GTGATAATCATGAGATCACTGAGATGTCTTCAGAATGCGACACAGAGTCTGACTCTGAAC 950
Query 883 TCGGCATTCTCCACAAGGTTGATGAAGAAGTGTCTGAATGTGAGGAGACTTCATATTTCA 942
||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct 951 TCGGCATTCTCCACAAGGTCGATGAAGAAGTGGCTGAATGTGAGGAGACTTCGTATTTCA 1010
Query 943 AAATGAGACAGCTAAAAGTCAAGAGGTGGCAGTCCTTTGGGAAGTTTAGCAGGGAGAAGC 1002
|||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 1011 AAATGAGACAACTAAAAGTCAAGAGGCGGCAGTCATTTGGGAAGTTTAGCAGGGAGAAAC 1070
Query 1003 TAGTGG-ATATGATGCTTGAGAGGCTTCAGGGATTACAAGAAGATCAACTTTCAAGTCTT 1061
|||||| || ||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1071 TAGTGGAAT-TGATGCTGGAGAGGCTTCAGGGCTTACATGAAGATCAACTTTCAAGTCTT 1129
Query 1062 GCCTCTGTAGTTGCTACTTGTGGTTTAAATGAGGTCTTGGCTGAAGTTGGTAGTCAGAGG 1121
|||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||
Sbjct 1130 GCCTCTGTAGTTGCTACTTGTGGTTTAAATGAGGCCTTGGCTGAAGTTAGTAGCCAGAGG 1189
Query 1122 CTGCACACCACAAACATCGAACCAACTGTTTCAG-ACCATGGGAGTTATTCTTCAATGGA 1180
| ||| || | | ||| | ||| | |||| | || | ||| | ||
Sbjct 1190 --G-----GACAGAC--C--A-CAA--GCTTC-GAACCA----A-TT-GT-TTC-A--GA 1224
Query 1181 TACAAGATCAAGAAGAGATTCTAAATTCTGGTCTTTAACGGAAGGAAAAACAACAAGGGA 1240
|||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||
Sbjct 1225 TACAAGATCAAGAAGAGATTCTAAATTCGGGTCCTTAATGGAAGGAAAAACAACAAGGGA 1284
Query 1241 TGGAACAGAGACAGAAATTCCGAGTTTGGACAAGTATTTAGTTAAGCACATGACCAAATT 1300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1285 TGGAACAGAGACAGAAATTCCGAGTTTGGACAAGTATCTAGTTAAGCACATGACCAAATT 1344
Query 1301 AGAAAGAGAAGTACATGAAGCCAAAAGGGCTTCAAAGGAAGTATCTGATAAAAACAAAAA 1360
|||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1345 AGAAAGAGAAGTCCATGAAGCCAAAAGGGTTTCAAAGGAAGTATCTGAGAAAAACAAAAA 1404
Query 1361 GGTTCCTCAAGGTGTTGCAAGTAATCCTGTTCCGGATTTGGGAAGCATCCTTGTGAAACA 1420
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1405 GGTTCCTCAAGGTGTTGCAAGTGATCCTGTTCCAGATTTGGGAAGCATCCTTGTGAAACA 1464
Query 1421 TTCTTCAAGGCTTGAGAAGGAGATCGAAGAAGCCAAGAAGAATGCAGGAGTGAGTTTTGG 1480
||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1465 CTCTTCAAGGCTTGAGAAAGAGATTGAAGAAGCCAAAAAGAACGCAGGAGTGAGTTTTGG 1524
Query 1481 AAAGTACCAAAAGACTTCAGGCAGAAACAAAACGCCATTGGATCCTATCCCGGACTTGGA 1540
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1525 AAAGTACCAAAAGACTTCAAGCAGAAACAAAACACCATTGGATCCTATCCCGGACTTGGA 1584
Query 1541 AAGTTTGCTAGTGAAAAAGCATGTTTCTGGATTCGAGAAAGAAGTTCAAGAAACTATAAA 1600
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1585 AAGTTTGCTAGTGAAAAAGCATGTTTCGGGATTGGAGAAGGAAGTTCAAGAAACTATAAA 1644
Query 1601 GAACTGCGGAAAAATGTATGAAAACGTGAAGAAACCGGGACA-AAAAGATAGTTTGTCGG 1659
|||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |
Sbjct 1645 GAACTGCGGAAAAATGTATGAAAACGTGAAGAAACCGGGA-AGAAAAGATGGTTTGTCTG 1703
Query 1660 AAATTCCAAGCCTTGATAGCTGTCTGGTAAAACATGTCTCcaagctagagaaaga-gatc 1718
|| |||||||||| ||||| ||||||||||||||| ||||||||||||||||||| | ||
Sbjct 1704 AAGTTCCAAGCCTGGATAGTTGTCTGGTAAAACATTTCTCCAAGCTAGAGAAAGAAG-TC 1762
Query 1719 caagaagcaaagaagag-aggccaagaagatcttgaagcaagTAATTCAAAAACAGTTTC 1777
||||||||||| ||||| || | ||||||||||||||||||| |||| | ||||||||||
Sbjct 1763 CAAGAAGCAAAAAAGAGGAG-CAAAGAAGATCTTGAAGCAAGGAATTTAGAAACAGTTTC 1821
Query 1778 AAGTGTGTTG--A-CAGAAGAATTGGGCAAAGAAAACGTAGACTCGAACAATAATACAGA 1834
|||||||||| | |||||||| |||||||||||||||||||||| |||||||||| ||
Sbjct 1822 AAGTGTGTTGTTAACAGAAGAACTGGGCAAAGAAAACGTAGACTCTAACAATAATAAAGC 1881
Query 1835 TGCGGGTCAAGAAAAAAGCCTAGACAAGATCTTGGTAAAGCCGGTTCACAGATTAGAGAC 1894
|| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1882 TGAGGGTCAAGAAGAAAGCCTAGACATGATCTTGGTAAAGCCGGTTCACAGATTAGAAAC 1941
Query 1895 AGAAAAAATTGCATGGGAAGCAGTTTATGGAAACAGGAGGATTCAGAAGAGAAAACAAGC 1954
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1942 AGAAAAAATTGCATCGGAAGCAGTTTATGGAAACCGGAGGATTCAGAAGAGAAAACAAGG 2001
Query 1955 AGCAAAAACAGAGTCAGATTATGAGAGTTTGGACAAAATTCTGGTGAAACATGTTCCCAA 2014
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2002 AGCAAAAACAGAGTCAAATTATGAGAGTTTGGACAAAATTCTGGTGAAACATGTTCCAAA 2061
Query 2015 GTTGGAGAAGGAGAAGCTCAGAT-T-CAAAGCTGGAGTAGAGGAGACGGAAAACTCAAAA 2072
| | ||||||||||||| |||| | ||||||||| ||||| |||||||| ||||||||
Sbjct 2062 GCTAGAGAAGGAGAAGC--AGATGTTCAAAGCTGGTGTAGAAGAGACGGAGAACTCAAAG 2119
Query 2073 A-ACAATAATGAAGATAGCTTGAAGCAAACAGTGGAGAAAAATAACCAGGGAACCGAAAG 2131
| | |||||||||| |||||||| | ||| ||| | | | || | |
Sbjct 2120 AGA-AATAATGAAGGGAGCTTGAA-C---CAG-GGACA----T-----G--AA---A--G 2157
Query 2132 CATGAAGATGGCAAAACCGAGTTTT-ACCAGACAACAATTGAGGGATAGAGAACTACAAG 2190
||||||| |||||||||||| || | | ||| | ||| ||||||||| |||| ||||||
Sbjct 2158 CATGAAGGTGGCAAAACCGA-TTCTCAGCAGGCGCCAAATGAGGGATAAAGAAATACAAG 2216
Query 2191 AAACTTGGGGTGGTTTAGCCCTTGGGGAGTCAAAGAACAATAACCAGAAGAGACCTGAAA 2250
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2217 AAACTTGGGGTGGTTTAGGACTTGGGGAGTCAAAGAACAATAACCAGAAGAAACCTGAAA 2276
Query 2251 GCAAGAAAACAGAAACTACTGAGCATTTAGGAGGAGAAGAGACAAGACCGGTGCTAACTA 2310
|||||||||||||| |||||||| |||| || | |||||||||||||||||| |||||||
Sbjct 2277 GCAAGAAAACAGAAGCTACTGAGAATTT-GG-G-AGAAGAGACAAGACCGGTCCTAACTA 2333
Query 2311 GACGACAAGAGAGGGACAAAGAAATGCTAGAAGCTTGGGGTGGTTTAGGACTTGGGGACT 2370
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2334 GACGACAAGAGAGGGACAGAGAAATGCTAGAAGCTTGGGGTGGTTTAGGACTTGGGGACT 2393
Query 2371 CAAGCTTGTACCAAACAGTTAATAAGCATAAAAGGAAACCTGAAAGCGAGAAGATGGAGA 2430
||| || ||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2394 CAACCTCGTACCAACCAGTTAATAAGAATAAAAGGAAACCTGAAAGCGAGAAGATGGAGA 2453
Query 2431 CAGCAACACCATTGTTAACAAGAAGACAAGCAAGGGATAGAGAAATGCAAGAAGCTTGGG 2490
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2454 CAGCAACACCATTGCTAACAAGAAGACAAGCACGGGATAGAGAAATGCAAGAAGCTTGGG 2513
Query 2491 GTGGTTTAGATCTCGGAAACTCAATTCGACCGAGTCTGTCAAAACTCGAAAGAGAAAAGG 2550
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2514 GTGGTTTAGACCTCGGAAACTCGATTCGACCGAGTCTGTCAAAACTCGAAAGAGAAAAGG 2573
Query 2551 CTGCATGGAGTAAGGCAGAGAAAGAGGAAACGACTCGAGGAAACTAAT 2598
||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 2574 CTGCATGGATTAAGGCCGAGAAAGAGGAAACGACTCGAGGAAACTAAT 2621
Score = 145 bits (78), Expect = 3e-33
Identities = 91/97 (94%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 2662 TCTAGCTAGTTTCAAGAAATATTGTGTAAATTTCATTTGGTAACAGTTGTAGAGTGTATG 2721
||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 2699 TCTAGCTAGATTCAAGAAATATTGGGTAAATTTCATTTGGTAACAGTTGTAGAATGTATG 2758
Query 2722 CAATAAAGAtttt-tttGTTAGGGACCAAtttttttt 2757
||||||| |||| |||||||||||||||||||||||
Sbjct 2759 TAATAAAG-TTTTCTTTGTTAGGGACCAATTTTTTTT 2794
> AT2G22482.1 | Symbols: | | chr2:9549649-9550084 REVERSE LENGTH=436
Length=436
Score = 135 bits (73), Expect = 2e-30
Identities = 87/94 (93%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 51 AAATTTGAGGATATGATTAAAGCCGCCATGGATCTCGGTTGCTTGGATTTGGGATGTCTT 110
|||||||| |||||||| |||||| |||||||||| |||||| |||||||||||||||||
Sbjct 66 AAATTTGAAGATATGATCAAAGCCACCATGGATCTTGGTTGCCTGGATTTGGGATGTCTT 125
Query 111 TCTGACAAGAAAAGCGGCGTCGGAGTGTCCGATC 144
|||||||||||||||||||||||||| ||| |||
Sbjct 126 TCTGACAAGAAAAGCGGCGTCGGAGTTTCCAATC 159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136955754390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5