BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474121
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49910.1 | Symbols: BUB3.2 | Transducin/WD40 repeat-like sup... 1827 0.0
AT3G19590.1 | Symbols: BUB3.1 | Transducin/WD40 repeat-like sup... 1098 0.0
> AT1G49910.1 | Symbols: BUB3.2 | Transducin/WD40 repeat-like superfamily
protein | chr1:18479025-18481475 FORWARD LENGTH=1224
Length=1224
Score = 1827 bits (989), Expect = 0.0
Identities = 1136/1207 (94%), Gaps = 10/1207 (1%)
Strand=Plus/Plus
Query 1 ATGACTCTGTTGCCGGCGATTGGTCGCGAGCTCTCGAATCCGCCGTCCGATGGGATTTCT 60
|||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGACTTTGGTGCCGGCCATTGGTCGCGAGCTCTCGAATCCACCGTCCGATGGGATTTCT 60
Query 61 AATCTCCGATTTTCCAATAGCAGCGATCATTTAATAGTCTCTTCATGGGACAAGAGTGTA 120
||||| |||||||| |||| ||||||||||||| |||||||||||||||| |||||||||
Sbjct 61 AATCTTCGATTTTCTAATAACAGCGATCATTTACTAGTCTCTTCATGGGATAAGAGTGTA 120
Query 121 AGATTGTATGATGCGAACGCCGATTTGATGAGAGGGGAGTTCAAGCATGGAGGAGCGGTA 180
||||||||||||||||||| ||||||||||||||||||||| || ||||| |||||||||
Sbjct 121 AGATTGTATGATGCGAACGGCGATTTGATGAGAGGGGAGTTTAAACATGGTGGAGCGGTA 180
Query 181 CTCGATTGCTGCTTCCATGATGATTCTTCTGGATTCAGTGTTTGCGCCGATACTAAAGTC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCGATTGCTGCTTCCATGATGATTCTTCTGGATTCAGTGTTTGCGCCGATACTAAAGTT 240
Query 241 AGACGAATTGACTTCAATGCTGGCAAAGAGGACGTTTTGGGGACGCATGATAAACCAGTT 300
||| ||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct 241 AGAAGAATTGACTTCAATGCTGGCAAAGAAGACGTTTTGGGTACGCATGAGAAGCCAGTT 300
Query 301 CGATGTGTTGAGTATTCTTATGCTGCAGGGCAAGTGATCACTGGAAGTTGGGATAAAACT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGATGTGTTGAGTATTCTTATGCTGCAGGGCAAGTGATCACTGGAAGTTGGGATAAAACG 360
Query 361 ATTAAATGTTGGGATCCAAGAGGTGCAAGTGGG-CTGGAGCGTACACATATTGGTACATA 419
||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| || ||
Sbjct 361 ATTAAATGTTGGGATCCAAGAGGTGCAAGTGGGACT-GAGCGCACACAGATTGGAACTTA 419
Query 420 TCA-GCAACCTGAGCGTGTTAACTCTCTTTCTGTAGTTGGAAATCGTTTGGTGGTGGCAA 478
| | |||||||||||||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct 420 T-ATGCAACCTGAGCGTGTTAACTCTCTTTCTCTTGTTGGAAATCGTTTGGTAGTGGCAA 478
Query 479 CAGCAGGAAGGCATGTCAACATTTATGATCTCAGAAATATGTCTCAGCCTGAGCAAAGAA 538
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 479 CAGCAGGAAGGCATGTCAACATTTATGATCTTAGAAATATGTCCCAGCCTGAGCAAAGAA 538
Query 539 GAGAGTCCTCACTTAAATACCAGACAAGATGTGTGCGTTGTTATCCCAATGGAACAGGAT 598
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 539 GAGAGTCCTCACTTAAATACCAGACAAGATGTGTACGTTGTTATCCCAACGGAACAGGAT 598
Query 599 ATGCCCTTAGCTCTGTTGAAGGGAGGGTGTCAATGGAGTTCTTTGATCGATCAGAAGCTG 658
|||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct 599 ATGCCCTTAGCTCTGTTGAAGGGAGGGTTTCAATGGAGTTTTTTGATCTATCAGAAGCTG 658
Query 659 CTCAAGCTAAAAAATATGCTTTCAAATGTCACCGGAAATCAGAGGATGGAAGGGACATTG 718
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTCAGGCTAAAAAATATGCTTTCAAATGTCACCGGAAATCAGAGGATGGAAGGGACATTG 718
Query 719 TCTACCCTGTAAATGCAATTGCTTTCCATCCGATTTATGGCACTTTTGCTTCCGGAGGTT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 719 TCTACCCTGTAAATGCAATTGCTTTCCATCCGATTTATGGCACTTTTGCTTCCGGAGGCT 778
Query 779 GTGATGGTTTCGTCAACATTTGGGATGGTAACAACAAGAAGAGGCTATATCAGTACTCTA 838
|||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 779 GTGATGGTTTTGTCAACATTTGGGACGGTAACAATAAGAAGAGGCTTTATCAGTACTCTA 838
Query 839 AGTATCCAACAAGTATTGCGGCGCTGTCATTCAGCCGAGATGGTGGATTACTGGCTGTTG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGTATCCAACAAGTATTGCGGCGCTGTCATTCAGCCGAGATGGTGGATTACTGGCTGTTG 898
Query 899 CTTCTAGTTACACGTTTGAAGAGGGAGACAAACCGCATGAACCAGACGCCATCTTTGTTC 958
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 899 CTTCTAGTTACACGTTTGAAGAGGGAGACAAACCGCATGAACCGGACGCCATCTTTGTTA 958
Query 959 GAAGTGTTAATGAAATCGAAGTGAAACCAAAACCCAAAGTATACCCCAATCCTCCGATAT 1018
|||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||| |||
Sbjct 959 GAAGTGTTAATGAAATTGAAGTGAAACCGAAACCCAAAGTATACCCAAATCCCCCGGTAT 1018
Query 1019 AGACTAGTCAGTAATAATGGAATGAGCAGAGTTAAATTCGACTTGTGTGTTGTATTGTAT 1078
|| | || | |||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct 1019 AGTCAAG--A--AATAATGGAATGAGCAGAGTCAAATTCGACTTGTGTGTTGT-T-GTAT 1072
Query 1079 TGTAGGACTTTAAAGTGAGTTTTAAAATCTTATTGTGGCTGTAAAGTGAATTGTGAACAT 1138
||||| |||| |||||||||| |||||||||||| ||||||||||||||| ||||||| |
Sbjct 1073 TGTAGCACTTGAAAGTGAGTTATAAAATCTTATTTTGGCTGTAAAGTGAAATGTGAACGT 1132
Query 1139 TACAAAGGCTTTCGAATCTGAGATTGTGTTCCATTTACTCTCTGGTTTGCCTCCAAtttt 1198
|| || |||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1133 TATAATGGCTTTCGAATCTGAGATGGTGTTCCATTTACTCTCTGGGTTGCCTCCAATTTT 1192
Query 1199 ttttttA 1205
| |||||
Sbjct 1193 TCTTTTA 1199
> AT3G19590.1 | Symbols: BUB3.1 | Transducin/WD40 repeat-like superfamily
protein | chr3:6805631-6808593 FORWARD LENGTH=1409
Length=1409
Score = 1098 bits (594), Expect = 0.0
Identities = 871/1003 (87%), Gaps = 26/1003 (3%)
Strand=Plus/Plus
Query 22 GGTCGCGAGCTCTCGAATCCGCCGTCCGATGGGATTTCTAATCTCCGATTTTCCAATAGC 81
||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||| |
Sbjct 192 GGTCGTGAGCTCTCGAATCCGCCGTCCGACGGCATTTCTAATCTCCGATTTTCTAATAAC 251
Query 82 AGCGATCATTTAATAGTCTCTTCATGGGACAAGAGTGTAAGATTGTATGATGCGAACGCC 141
|| |||||| | | || ||||||||||| ||| |||| ||||||||||||| || | ||
Sbjct 252 AGTGATCATCTCCTCGTTTCTTCATGGGATAAGCGTGTGAGATTGTATGATGTGAGCACC 311
Query 142 GATTTGATGAGAGGGGAGTTC-AAGCATGGAGGAGCGGTACTCGATTGCTGCTTCCATGA 200
||| | ||| ||| |||||| | ||||| ||||| |||||||||||||| || || ||
Sbjct 312 AATTCGTTGAAAGGAGAGTTCTTA-CATGGCGGAGCAGTACTCGATTGCTGTTTTCACGA 370
Query 201 TGA-TTCTTCTGGATTCAGTGTTTGCGCCGA-TACTAAAGTCAGACGAATTG-ACTTCAA 257
||| ||| || || ||||||||| |||| || ||| |||||| |||| |||| | |||||
Sbjct 371 TGACTTC-TCCGGCTTCAGTGTTGGCGCTGATTAC-AAAGTCCGACGGATTGTA-TTCAA 427
Query 258 TGCT-GGCAAAGAGGACGTTTTGGGGACGCATGATAAACCAGTTCGATGTGTTGAGTATT 316
|| | |||||||||||| |||||||||| ||||| ||| |||| ||||||||||||||||
Sbjct 428 TG-TCGGCAAAGAGGACATTTTGGGGACACATGACAAAGCAGTGCGATGTGTTGAGTATT 486
Query 317 CTTATGCTGCAGGG-CAAGTGATCACTGGAAGTTGGGATAAAACTA-TTAAATGTTGGGA 374
|||| ||||| ||| ||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 487 CTTACGCTGC-GGGACAAGTGATCACTGGATCTTGGGATAAAAC-AGTTAAATGTTGGGA 544
Query 375 TCCAAGAGGTGCAAGTGGG-CTGGAGCGTACACATA-TTGGTACATATCAGCAACCTGAG 432
||||||||| || |||||| || || || || || | | || |||||| |||||| ||
Sbjct 545 TCCAAGAGGCGCTAGTGGGCCT-GAACGCACCCA-AGTGGGAACATATTTGCAACCAGAA 602
Query 433 CGTGTTAACTCTCTTTCTGTAGTTGGAAATCGTTTGGTGGTGGCAACAGCAGGAAGGCAT 492
|||||| ||||| | ||| | |||||| |||||||||| ||||| |||||||||||||||
Sbjct 603 CGTGTTTACTCTATGTCTCTTGTTGGACATCGTTTGGTAGTGGCTACAGCAGGAAGGCAT 662
Query 493 GTCAACATTTATGATCTCAGAAATATGTCTCAGCCTGAGCAAAGAAGAGAGTCCTCACTT 552
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 663 GTAAACATCTATGATCTCAGAAATATGTCTCAGCCTGAGCAAAGAAGGGAGTCTTCACTG 722
Query 553 AAATACCAGACAAGATGTGTGCGTTGTTATCCCAATGGAACAGGATATGCCCTTAGCTCT 612
||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 723 AAATACCAGACGAGATGTGTGCGTTGTTATCCTAATGGAACAGGCTATGCTCTTAGCTCT 782
Query 613 GTTGAAGGGAGGG-TGTCAATGGAGTTCTTTGATC-GATCAGAAGCTGCTCAAGCTAAAA 670
|||||||| |||| || |||||||||| ||||||| | ||||| ||||||||||||||||
Sbjct 783 GTTGAAGGAAGGGTTG-CAATGGAGTTTTTTGATCTG-TCAGAGGCTGCTCAAGCTAAAA 840
Query 671 AATATGCTTTCAAATGTCACCGGAAATCAGAGGATGGAAGGGACATTGTCTACCCTGTAA 730
||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||
Sbjct 841 AATATGCTTTCAAATGTCATCGGAAATCAGAGGCTGGAAGGGACATTGTTTACCCTGTAA 900
Query 731 ATGCAATTGCTTTCCATCCGATTTATGGCACTTTTGCTTCCGGAGGTTGTGATGGTTTCG 790
|| | ||||| |||||||| || |||||||| ||||| | ||||| |||||||||||||
Sbjct 901 ATTCCATTGCCTTCCATCCAATCTATGGCACCTTTGCAACTGGAGGCTGTGATGGTTTCG 960
Query 791 TCAACATTTGGGATGGTAACAACAAGAAGAGGCTATATCAGTACTCTAAGTATCCAACAA 850
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 961 TCAACATTTGGGATGGTAACAACAAGAAGAGGCTATATCAGTACTCAAAGTATCCAACGA 1020
Query 851 GTAT-TGCGGCGCTGTCATTCAGCCGAGATGGTG-GATTACTGGCTGTTGCTTCTAGTTA 908
|||| | |||| ||||||||||| ||||||||| | | |||||||||||||| |||||
Sbjct 1021 GTATCT-CGGCACTGTCATTCAGTCGAGATGGTCAGCTG-CTGGCTGTTGCTTCAAGTTA 1078
Query 909 CACGTTTGAAGAGGGAGACAAACCGCATGAACCAGACGCCATCTTTGTTCGAAGTGTTAA 968
||| |||||||||||||| ||| |||| ||||| || ||||||||||| |||| || ||
Sbjct 1079 CACATTTGAAGAGGGAGAGAAATCGCAAGAACCGGAGGCCATCTTTGTAAGAAGCGTGAA 1138
Query 969 TGAAATCGAAGTGAAACCAAAACCCAAAGTATACCCCAATCCT 1011
|||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1139 TGAAATCGAAGTGAAACCAAAACCGAAAGTATACCCGAATCCT 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5