BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474123
Length=1349
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49950.3 | Symbols: TRB1, ATTRB1 | telomere repeat binding f... 1808 0.0
AT5G67580.1 | Symbols: TRB2, ATTRB2, TBP3, ATTBP3 | Homeodomain... 119 8e-26
> AT1G49950.3 | Symbols: TRB1, ATTRB1 | telomere repeat binding
factor 1 | chr1:18494115-18497187 REVERSE LENGTH=1530
Length=1530
Score = 1808 bits (979), Expect = 0.0
Identities = 1184/1275 (93%), Gaps = 45/1275 (4%)
Strand=Plus/Plus
Query 108 TGCAGAACGGACTTGCTTTGACACAGCAGACCGTAAATCGGGATGGGTGCTCCAAAGCAG 167
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 263 TGC-GAACGGACTTGCTTTGACACAGCAGACCGTAAATCGGGATGGGTGCTCCTAAGCAG 321
Query 168 AAATGGACTCAAGAAGAAGAATCAGCTTTAAAGTCTGGCGTTATAAAGCATGGACCTGGT 227
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 322 AAATGGACTCAAGAAGAAGAGTCAGCTTTAAAGTCTGGAGTTATAAAGCATGGACCTGGT 381
Query 228 AAATGGCGCACAATTCTCAAAGATCCTGAATTTAGCGGAGTCTTATACCTGCGTTCCAAT 287
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 382 AAATGGCGCACAATTCTCAAAGATCCTGAATTTAGCGGAGTCTTGTACCTGCGTTCCAAT 441
Query 288 GTTGATCTTAAGGACAAATGGAGAAACATGAGTGTCATGGCGAATGGGTGGGGATCGCGC 347
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 442 GTTGATCTTAAGGACAAATGGAGAAACATGAGTGTCATGGCAAATGGCTGGGGATCGCGC 501
Query 348 GAAAAGTCTAGGTTAGCTGTTAAAAGGACACTCTCCCTTCCTAAACAGGAAGAGAACTCA 407
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 502 GAAAAGTCTAGGTTAGCTGTTAAAAGGACGTTCTCCCTTCCTAAACAGGAAGAGAACTCA 561
Query 408 CTAGCCCTAACCAATTCTTTGCAAAGTGATGAAG-AAATGGTGGATGCGACCTCTGGACT 466
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 562 CTAGCCCTAACCAATTCTTTGCAAAGTGATGAAGAAAAT-GTGGATGCGACCTCTGGACT 620
Query 467 GCAAGTTTCTTCTAATCCTGCTCCAAGGAGACCTAATGTAAGGTTGGATAGCCTTATAAT 526
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CCAAGTTTCTTCTAATCCTCCTCCAAGGAGACCTAATGTAAGGTTGGATAGCCTTATAAT 680
Query 527 GGAAGCAATAGCTACCCTGAAAGAGCCTGGTGGCTGTAATAAAACAACAATTGGTGCCTA 586
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 681 GGAAGCAATAGCTACCCTGAAAGAACCTGGTGGCTGTAACAAAACAACAATTGGTGCCTA 740
Query 587 CATTGAGGATCAATATCATGCTCCAATGGACTTCAAACGGTTGTTGTCTACCAAGCTAAA 646
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 741 CATTGAGGATCAATATCATGCTCCACCAGACTTCAAACGCTTGTTGTCTACCAAGCTAAA 800
Query 647 GTACTTGACAGCTTGCGGCAAACTTGTGAAGGTTAAGCGTAAGTATAGAATTCCAAACTC 706
|||||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 801 GTACTTGACATCTTGCGGGAAACTTGTGAAGGTTAAACGTAAGTACAGAATTCCAAACTC 860
Query 707 CACTCCGTTATCTTCCCACAGGAAAAAAGGTCTGGGGGCGTTTGCAGGAAGACAGAGGAC 766
|||||| || ||||||||||||| |||||||||||||| ||||| ||||| |||||||||
Sbjct 861 CACTCCCTTGTCTTCCCACAGGAGAAAAGGTCTGGGGGTGTTTGGAGGAAAACAGAGGAC 920
Query 767 TTCTTCATTGCCTTCACCTAAAACAGACAGAGATGAAGTGAATTTTCAGACAAGGTCACA 826
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 921 TTCTTCTTTGCCTTCACCTAAAACAGACATAGATGAAGTGAATTTTCAGACAAGGTCACA 980
Query 827 GATGGATACAGAGTTAGCCAGAATGAAGAGTATGAACGTACATGAGGCGGCAGCAGTTGC 886
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 GATTGATACAGAGATAGCCAGAATGAAGAGTATGAACGTACATGAGGCGGCAGCAGTTGC 1040
Query 887 AGCACAGGCAGTAGCAGAGGCAGAAGCT-CTCATGGCAGAGGCTGAGGAAGCTGCAAAGG 945
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1041 AGCACAGGCAGTAGCAGAGGCAGAAGCTGC-CATGGCAGAGGCTGAGGAAGCTGCAAAGG 1099
Query 946 AAGCAGAGGCAGCAGAAGCCGAAGCCGAAGCAGCTCAAGCTTTCGCTGAAGAAGCTTCAA 1005
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1100 AAGCGGAGGCAGCAGAAGCCGAAGCAGAAGCAGCTCAAGCTTTCGCTGAGGAAGCTTCAA 1159
Query 1006 AGACACTGAAAGGAAGAAACAACTGCAAAATGATGATCCGTGCCTGAGGTGATGGAAAGC 1065
||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1160 AGACATTGAAAGGAAGAAACATCTGCAAAATGATGATCCGTGCCTGAGGTAATGGAAAGC 1219
Query 1066 GAGAGAAGAAGAA-ACTAAAAGTGAAGAGAGAGTAAAGAGTTGCCTAGTGTTTGTGTTG- 1123
||||||||||| | |||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 1220 GAGAGAAGAAGGAGACTAAATGTGAAGAGAGAGTAGAGAGAAGCCTAGTGTTTGTGTTGA 1279
Query 1124 T--TT-T-TT-A---G-----T--------AGTA--A-GCAATCAAATATGTTTGTCAGT 1159
| || | || | | | |||| | ||||||||||||||||||||||
Sbjct 1280 TCATTCTCTTTACTTGGGAAGTTGTTTTTTAGTAGTAAGCAATCAAATATGTTTGTCAGT 1339
Query 1160 ATGTCG-C-CT--GACTCTTTTGATTCCTGCACAACTTT-GGGaaaaaaaaaGTTTTATT 1214
|||||| | || |||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1340 ATGTCGTCGCTCTGACTCTTTTGATTCCTGCACAACTTTTGGGAAAAAAT--GTTTTATT 1397
Query 1215 TG-CTCTTCTCGCTCTCCAATATAC---CA-CTATCGTTAGTAAAATGTGTATAATTTAT 1269
|| |||||||| ||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 1398 TGGCTCTTCTCACTCTCCAATATACATACAACTATCGTTAGTAA--TGTGTATAATTTAT 1455
Query 1270 ACATCGATCTATCTATGCACTATCATGCTTATCGCCAATGAGCATTTTAATTATGTATGT 1329
| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1456 AGACCGATCTATCTATGCACTATCATGCTTATCGCCAATGAGCATTTTGATTATGTATGT 1515
Query 1330 ATTATCAATTAATAG 1344
|||||||||||||||
Sbjct 1516 ATTATCAATTAATAG 1530
> AT5G67580.1 | Symbols: TRB2, ATTRB2, TBP3, ATTBP3 | Homeodomain-like/winged-helix
DNA-binding family protein | chr5:26955135-26957743
REVERSE LENGTH=1862
Length=1862
Score = 119 bits (64), Expect = 8e-26
Identities = 136/170 (80%), Gaps = 8/170 (5%)
Strand=Plus/Plus
Query 148 GGATGGGTGCTCCAAAGCAGAAATGGACTCAAGAAGAAGAATCAGCT-TTAAAGTCTGGC 206
|||||||||| ||||||||||| ||||| | ||||||||| ||||| |||||| ||||
Sbjct 253 GGATGGGTGCACCAAAGCAGAAGTGGACACCGGAAGAAGAAGCAGCTCTTAAAG-CTGGA 311
Query 207 GTTATAAAGCAT-GGACCTGGTAAATGGCGCACAATTCTCAAAGATCCTGAATTTAGCGG 265
||| | |||||| ||| |||| || ||||| || || ||| ||| |||| |||||
Sbjct 312 GTTCTTAAGCATGGGA-CTGGGAAGTGGCGTACCATACTCTCGGATACTGAGTTTAGTTT 370
Query 266 AGT-CTTATA-CCTGCGTTCCAATGTTGATCTTAAGGACAAATGGAGAAA 313
| | |||| | || || || |||||||||||||||||||||||||||||
Sbjct 371 AATCCTTA-AGTCT-CGCTCTAATGTTGATCTTAAGGACAAATGGAGAAA 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66415321035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5