BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474126
Length=1781
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49960.1 | Symbols: | Xanthine/uracil permease family prote... 2785 0.0
AT1G49970.1 | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease prote... 470 3e-131
> AT1G49960.1 | Symbols: | Xanthine/uracil permease family protein
| chr1:18498639-18501886 FORWARD LENGTH=1829
Length=1829
Score = 2785 bits (1508), Expect = 0.0
Identities = 1696/1785 (95%), Gaps = 20/1785 (1%)
Strand=Plus/Plus
Query 1 TATGGCGACAAAGACCGATGATTTTGCACCATTTCCAGTTAAAGATCAGCTTCCCGGAGT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATGGCAACAAAGACCGATGATTTTGCACCATTTCCAGTTAAAGATCAGCTTCCCGGAGT 120
Query 61 CGAATTTTGTGTCTCGAGCTCTCCAAATTGGCCGGAAGGCATAGTTCTTGGGTTTCAACA 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 CGAATTTTGTGTCTCGAGCTCTCCAAATTGGCCGGAAGGAATAGTTCTTGGGTTTCAACA 180
Query 121 TTACATTGTAATGCTTGGAACTACTGTTATCATACCTTCCATACTCGTCCCTCTAATGGG 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 TTACATTGTAATGCTTGGAACTACTGTAATCATACCTTCCATACTCGTCCCTCTAATGGG 240
Query 181 TGGTGGCGACGTGGAGAAAGCGGAAGTCATAAACACAGTGTTGTTCGTGTCGGGAATAAA 240
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 241 TGGTGGCGACGTGGAGAAAGCGGAAGTCATAAACACAGTATTGTTCGTGTCAGGAATAAA 300
Query 241 CACGTTGTTGCAGAGTTTGTTCGGAAGTCGACTTCCTGTCGTCATGGGAGCTTCTTATGC 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 CACGTTGTTGCAGAGTTTGTTCGGAAGTCGACTTCCTGTGGTCATGGGAGCTTCTTATGC 360
Query 301 TTACGTCATCCCTGCTCTTTACATCACTTTCTCTTATCGCTTCACTTACTATCTCCATCC 360
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 TTACCTCATCCCTGCTCTTTACATCACTTTCTCTTATCGATTCACTTACTATCTCCATCC 420
Query 361 TCATTTGAGATTTGAAGAGACTATGAGAGCTATTCAAGGAGCTCTTATCATTGCTTCTAT 420
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 TCATCTCAGATTTGAAGAGACTATGAGAGCTATTCAAGGAGCTCTTATCATTGCTTCAAT 480
Query 421 AATTCATATGATAACGGGTTTCTTCGGTTTGTGGAGGATCTTGGTCAGGTTTCTTACTCC 480
|| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 481 AAGTCATATGATAATGGGTTTCTTCGGTTTGTGGAGAATCTTGGTCAGGTTTCTTTCTCC 540
Query 481 TCTTTCGGCTGCTCCTCTCGTGATTCTCACCG-CTGTTGGCCTCGTCGCCTTAGCGTTTC 539
|||||||||||||||||| ||||||||||||| | ||||||||| ||||||| |||||||
Sbjct 541 TCTTTCGGCTGCTCCTCTTGTGATTCTCACCGGC-GTTGGCCTCCTCGCCTTTGCGTTTC 599
Query 540 CTCAGCTTGCGAGATGTATAGAAATTGGACTCCCAGCGTTGATCATACTGATAATTTTAT 599
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 CTCAGCTTGCGAGATGTATAGAAATTGGACTCCCAGCATTGATCATACTGATAATTTTAT 659
Query 600 CTCAGTATCTTCCTCACTTGTTTAAGTGTAAGAGATCTATATGCGAGCAATTCGCTGTTC 659
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 660 CTCAGTATCTTCCTCACTTGTTTAAGTGTAAGAGATCAATATGCGAGCAATTCGCTGTTC 719
Query 660 TGTTCACAATAGCTATCGTGTGGGCATACGCAGAGATTCTGACGGCAGCTGGAGCTTACG 719
||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| |
Sbjct 720 TGTTCACAATAGCGATCGTCTGGGCTTACGCAGAGATTCTGACAGCAGCTGGAGCTTATG 779
Query 720 ACAAAAGACCGGATAGTACACAGCTCAGTTGTCGAACAGACCGGTCTGGTCTCATTAGTG 779
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACAAAAGACCGGACAATACACAGCTCAGTTGTCGAACAGACCGGTCTGGTCTCATTAGTG 839
Query 780 CTTCTCCATGGGTGAGAATTCCATATCCATTGCAATGGGGACGTCCAAGTTTTCATGCAA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 840 CTTCTCCATGGGTGAGAATTCCATATCCATTGCAATGGGGACGTCCAAGTTTCCATGGAA 899
Query 840 GTGATGCATTCGCAATGATGGCAGCTACGTATGTGGCGATTGTAGAGACGACAGGTTCCT 899
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 900 GTGATGCATTCGCAATGATGGCAGCTACTTACGTGGCGATTGTCGAGACGACAGGTTCCT 959
Query 900 TCATCGCCGCTTCAAGATTTGGTAGCGCAACTCATATCCCTCCCTCAGTGCTTAGTCGTG 959
||||||| |||||||||||||| || |||||||||||||||||||| |||||||| ||||
Sbjct 960 TCATCGCGGCTTCAAGATTTGGCAGTGCAACTCATATCCCTCCCTCGGTGCTTAGCCGTG 1019
Query 960 GCATTGGATGGCAGGGCATAGGCGTTTTGCTGGGTGGACTCTTTGGAACAGCAACTGGTT 1019
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1020 GCATTGGATGGCAGGGCATAGGCGTTTTGCTGAATGGACTGTTTGGAACAGCAACTGGTT 1079
Query 1020 CCACAGCTTTGGTTGAAAATACAGGGCTTCTAGGATTAACGAAGGTTGGGAGCAGAAGAG 1079
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCACAGCTTTGGTAGAAAATACAGGGCTTCTAGGATTAACGAAGGTTGGGAGCAGAAGAG 1139
Query 1080 TGGTCCAGATAGCTGCAGGTTTCATGATCTTCTTCTCCATTTTTGGGAAGTTTGGGGCTG 1139
|||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1140 TGGTTCAGATATCTGCAGGTTTCATGATCTTCTTCTCCATTTTCGGGAAGTTTGGGGCTG 1199
Query 1140 TTCTTGCATCGATACCACTACCGATATTTGCAGCTCTGTACTGTGTTCTATTCGCCTATG 1199
|||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 1200 TTCTTGCATCAATACCTTTACCAATCTTTGCAGCTCTGTACTGTGTTCTATTCGCCTATG 1259
Query 1200 TTGCTTCTGCGGGACTTGGCCTTCTTCAATTCTGCAACATAAACAGCTTTAG-AACTAAA 1258
|||||||||||||||||||||||||||| ||||||||| ||||||||||||| || ||||
Sbjct 1260 TTGCTTCTGCGGGACTTGGCCTTCTTCAGTTCTGCAACTTAAACAGCTTTAGGAA-TAAA 1318
Query 1259 TTTATCCTCGGCTTCTCCATCTTCATCGGTCTCTCTGTGGCGCAATACTTCACCGAATAT 1318
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1319 TTTATCCTCGGCTTCTCCATCTTCATTGGACTCTCTGTGGCGCAATACTTCACCGAATAT 1378
Query 1319 CTATTCATCTCTGGTCGTGGACCTGTTCATACTCGTACTTCTGCTTTCAATGTGATAATG 1378
|||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||
Sbjct 1379 CTATTCATCTCTGGTCGTGGACCTGTCCACACTCGCACTTCTGCTTTCAACGTGATAATG 1438
Query 1379 CAAGTGATATTCTCTTCGGCGGCAACAGTTGG-AGTAATGGCAGCGTTCTTGTTGGACTG 1437
||||||||||||||||| || ||||| ||||| | |||||||||||||||||||||||||
Sbjct 1439 CAAGTGATATTCTCTTCCGCTGCAACGGTTGGGA-TAATGGCAGCGTTCTTGTTGGACTG 1497
Query 1438 TACTCATAGCTATGGACATGCCTCAGTGAGGAGAGACAGTGGAAGACATTGGTGGGAGAA 1497
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1498 TACTCATAGCTATGGACATGCCTCGGTGAGGAGAGACAGCGGAAGACATTGGTGGGAGAA 1557
Query 1498 ATTCAGAGTCTACCACACTGATACTCGAACAGAAGAGTTTTACGCATTGCCTTACAACCT 1557
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1558 ATTCAGAGTCTACCACACTGATACTCGAACAGAAGAATTTTACGCATTGCCTTACAACCT 1617
Query 1558 CAACCGATTCTTCCCTTCTTTCTGAAAATTCTGAAAATCCCGAAAACCCAAAACTAGGTT 1617
|||||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 1618 CAACCGATTCTTCCCTTC------A---TTCTGAAAATCCCGAAAACCCAAAACTCGGTT 1668
Query 1618 TTTTCAGAGTGTGAGAAACCTGCATCTAGAGAGATACATGTATAATACAAATAACTTTCC 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 TTTTCAGAGTGTGAGAAACCTGCATCTAGAGAGATACATGTATAATACAAATAACTTTCC 1728
Query 1678 GCCTAGAGAACTTTTGATGttttttttttCCCTTTTTGCCAACACTTTTT-GTATGTTAC 1736
|||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||
Sbjct 1729 ACCTAGATAACTTTTGATGTTATTT----CCCTTTTTGCCAACACTTTTTTGTATGTTAC 1784
Query 1737 TACAACATGTGTTTGCTTATAGATTGTAAAAGCTACATATTCCAG 1781
||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1785 TACCACATGTGTTTGCTTATAGATTGTAAGAGCTACATATTCCAG 1829
> AT1G49970.1 | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease proteolytic
subunit 1 | chr1:18501570-18504609 REVERSE LENGTH=1677
Length=1677
Score = 470 bits (254), Expect = 3e-131
Identities = 307/330 (93%), Gaps = 14/330 (4%)
Strand=Plus/Minus
Query 1453 ACATGCCTCAGTGAGGAGAGACAGTGGAAGACATTGGTGGGAGAAATTCAGAGTCTACCA 1512
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1677 ACATGCCTCGGTGAGGAGAGACAGCGGAAGACATTGGTGGGAGAAATTCAGAGTCTACCA 1618
Query 1513 CACTGATACTCGAACAGAAGAGTTTTACGCATTGCCTTACAACCTCAACCGATTCTTCCC 1572
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1617 CACTGATACTCGAACAGAAGAATTTTACGCATTGCCTTACAACCTCAACCGATTCTT-CC 1559
Query 1573 TTCTTTCTGAAAATTCTGAAAATCCCGAAAACCCAAAACTAGGTTTTTTCAGAGTGTGAG 1632
| ||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1558 --C-TTC-----ATTCTGAAAATCCCGAAAACCCAAAACTCGGTTTTTTCAGAGTGTGAG 1507
Query 1633 AAACCTGCATCTAGAGAGATACATGTATAATACAAATAACTTTCCGCCTAGAGAACTTTT 1692
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1506 AAACCTGCATCTAGAGAGATACATGTATAATACAAATAACTTTCCACCTAGATAACTTTT 1447
Query 1693 GATGttttttttttCCCTTTTTGCCAACACTTTTT-GTATGTTACTACAACATGTGTTTG 1751
|||||| ||| ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1446 GATGTTATTT----CCCTTTTTGCCAACACTTTTTTGTATGTTACTACCACATGTGTTTG 1391
Query 1752 CTTATAGATTGTAAAAGCTACATATTCCAG 1781
|||||||||||||| |||||||||||||||
Sbjct 1390 CTTATAGATTGTAAGAGCTACATATTCCAG 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88101956475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5