BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474131 Length=1372 Score E Sequences producing significant alignments: (Bits) Value AT1G49990.1 | Symbols: | F-box family protein | chr1:18513628-... 1286 0.0 > AT1G49990.1 | Symbols: | F-box family protein | chr1:18513628-18515099 FORWARD LENGTH=1472 Length=1472 Score = 1286 bits (696), Expect = 0.0 Identities = 825/884 (93%), Gaps = 21/884 (2%) Strand=Plus/Plus Query 19 AAG-AAACAGAGAGACCAAAAGAGACTCTAATGGAGACT-G--GAAGAAGAACAATCCCA 74 ||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||| Sbjct 39 AAGAAAACAGAGAGACCAAAAAAGACTCTAATGGAGACTGGAAGAAGAAGAACAATCCCA 98 Query 75 GAGGTGGAGATACTTGCAAGATTACCGTTGAGAAGCATCGCGAGATTCAAATCAGTCTGC 134 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| Sbjct 99 GAGGTGGAGATACTTGCAAGATTACCGTTGAGAAGCATTGCGAGGTTCAAATCAGTATGC 158 Query 135 AAAAGATGGAAATCGGTGATAGAATCGGGCTACTTCCGACGTCTCTTTGTCTCTCTTCAC 194 |||||||||||||| || |||||||||| |||||||||||||||||| | ||| ||||| Sbjct 159 AAAAGATGGAAATCAGTAATAGAATCGGACTACTTCCGACGTCTCTTCGGATCTTTTCAC 218 Query 195 GGAAACTCCTCTACCTCATGGTC-ACTCATGTTCAGAACAGAGTATCTTCGTCAGATGAC 253 ||| |||||||||||||||||| | |||||||||||||||||||||||||| ||||||| Sbjct 219 CGAAGCTCCTCTACCTCATGGTCGA-TCATGTTCAGAACAGAGTATCTTCGTGAGATGAC 277 Query 254 ACAAGCCATAGGCTTCCATGGATGCAAAACATGGGATCTTCCCAAATCACTACTTTCTTA 313 |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || Sbjct 278 ACAAGCCATAGGCTTCCATGGATGCAAAACATGGGATCTTCCCAAATCTCTAGTTTCATA 337 Query 314 TATCATGCCATTTCAAGTATATCCGAATCTCCCTACCGGCTCTGAATACTACTATATAGC 373 ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| Sbjct 338 TATCATGCCATTTCAAGAATATCCGAATCTCCCTA-C--CTCTGAATACTACTATATAGC 394 Query 374 TTCTTCCAATGGATTGATTTGGATCGATGT-CTTTGTTTCTCGCATCAAGGACATGGTTT 432 |||||||||||||||||||||||||||||| | ||||||||||||||||| ||| ||||| Sbjct 395 TTCTTCCAATGGATTGATTTGGATCGATGTGC-TTGTTTCTCGCATCAAGAACAAGGTTT 453 Query 433 CTAGTTATAAATCTTTTGTTGGTAATCCAGTTTTACAACAATGGGTTGAGATCCCTCAAC 492 ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 454 ATAGTTATAAATCTTTCGTTGGTAATCCAGTTTTACAAGAATGGGTTGAGATCCCTCAAC 513 Query 493 CTCCTAATCCATGGGTTCAAGATAAACACCCTTGGTATCCGAGTCCGTTA-AGCGACGTT 551 ||||||||||||||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct 514 CTCCTAATCCATGGGTTCAAGATAAACACCCTTGGTACCCGAGTCC-ATATAGCGGCGTT 572 Query 552 GGTATGGTAACACGCGTTGAGAACGGCGTCGTTTCAAGCTTCAAGATAGTTAGGACAATC 611 || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || Sbjct 573 GGAATGGTAACACGCGTTGAGAACGGCGTCGTTTCAAGTTTCAAGATGGTTAGGACAGTC 632 Query 612 CAAATGGAACTGATTGATCGTAGAGATGAAGGAATGTATTTATGGAGAGTTTGTGTATAT 671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 633 CAAATGGAACTGATTGATCGTAGAGATGAAGGAATGTATTTATGGAGAGTTTGTGTATAT 692 Query 672 TCTTCGGAGACAGGTTTATGGACTTTCAAGCAAGTTTTCTCATCTCGACCCGTCAACGCT 731 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 693 TCTTCTGAGACAGGTTTATGGACTTTCAAGCAAGTTTTCTCATCTCGACCCGTCCACGGT 752 Query 732 GGTAGAATTGATTCTCCGGTGAATCTCAATGGGAGT-CTTTATATGTGGGATAGGTATAT 790 |||||| |||||||||||||||||||||| ||| || ||||||||||||||||||||||| Sbjct 753 GGTAGAGTTGATTCTCCGGTGAATCTCAACGGG-GTTCTTTATATGTGGGATAGGTATAT 811 Query 791 GTTTTCTAATGGACCTGGTGTCCTTGTAGCTCATGACTTTTATGGCCATGAAGCTGATGA 850 |||||| |||||||||||||||||||||||||||||||||||||| | | ||||||| Sbjct 812 GTTTTCAAATGGACCTGGTGTCCTTGTAGCTCATGACTTTTATGG--A-G---CTGATGA 865 Query 851 TCAATGTCAGGTTATACCTCTCCCTGGCGCGGATGATGAAGATG 894 ||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 866 TCAATGTCAGGTTATACCTCTCCCTGGCGCGAATGATGAACATG 909 Score = 793 bits (429), Expect = 0.0 Identities = 467/486 (96%), Gaps = 0/486 (0%) Strand=Plus/Plus Query 886 ATGAAGATGTTCGGAGATGCTTGACTACTTCAGGAGAAGATGTTATCTTCATTGAAGTAA 945 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 931 ATGAACATGTTCGGAGATGCTTGACTACTTCAGGAGAAGATGTTATCTTCATTGAAGTAA 990 Query 946 TACATCAAACATTGAAAGTATGGAGGCTGAATAACGAAGAGAGTGAAAGGTGGCAACTGA 1005 |||||| || |||||||| |||||||||| ||||| |||||||||||||||||||||||| Sbjct 991 TACATCGAATATTGAAAGCATGGAGGCTGCATAACAAAGAGAGTGAAAGGTGGCAACTGA 1050 Query 1006 TTTGGGAAGTCATCATGCCGTCTTTCATATCTGATGTCAACTGTTTTCCCCTGGCAATGA 1065 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1051 TTTGGGAAGTCGTCATGCCGTCTTTCATATCTGATGTCAACTGTTTTCCCCTGGCAATGA 1110 Query 1066 ATCCGTTTGATACTGATATCGTCTATCTGTGGGATCGTCAACACGGTTGTTTGGTATCGG 1125 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1111 ATCCGTTTGATACTTATATCGTCTATCTGTGGGATCGTCAACACGGTTGTTTGGTATCGG 1170 Query 1126 GTTACTTGCAGGCACAAGAGTTTATTGTTCATCAAGAGTCAGAGGGTTGGAGTAGTAGTG 1185 |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1171 GTTACTTGCAGGCACAAGAGTTTATTGTTCATCAAGAGTCAGAGAATGGGAGTAGTAGTG 1230 Query 1186 AAGGTGATTGTTGTCGCGTAAACACGTCGGGTACTGAGGGGTACATGGAAGAGAGATGCG 1245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1231 AAGGTGATTGTTGTCGCGTAAACACGTCGGGTACTGAGGGGTACATGGAAGAGAGATGCG 1290 Query 1246 ATGGAGTCCTTATGTTATCCCAGTTTGTGCTCCCATGTTGGATGGACTCGGTACCCCGAC 1305 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1291 ATGGAGTCCTTATGTTATCCCAGTTTGTGCTCCCATCTTGGATGGACTCGGTACCCCGAC 1350 Query 1306 CGCCAGATTAATTATCATTCTTAGGGAAGCTTGTTCTTTGGTGTTTATGTATTTTTGTTT 1365 ||||| ||| |||||| ||||| ||||||||||||||| ||||||||||||||||| | | Sbjct 1351 CGCCAAATTGATTATCCTTCTTCGGGAAGCTTGTTCTTCGGTGTTTATGTATTTTTATGT 1410 Query 1366 ATCCTT 1371 |||||| Sbjct 1411 ATCCTT 1416 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67569933570 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5