BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474131
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49990.1 | Symbols: | F-box family protein | chr1:18513628-... 1286 0.0
> AT1G49990.1 | Symbols: | F-box family protein | chr1:18513628-18515099
FORWARD LENGTH=1472
Length=1472
Score = 1286 bits (696), Expect = 0.0
Identities = 825/884 (93%), Gaps = 21/884 (2%)
Strand=Plus/Plus
Query 19 AAG-AAACAGAGAGACCAAAAGAGACTCTAATGGAGACT-G--GAAGAAGAACAATCCCA 74
||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 39 AAGAAAACAGAGAGACCAAAAAAGACTCTAATGGAGACTGGAAGAAGAAGAACAATCCCA 98
Query 75 GAGGTGGAGATACTTGCAAGATTACCGTTGAGAAGCATCGCGAGATTCAAATCAGTCTGC 134
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 99 GAGGTGGAGATACTTGCAAGATTACCGTTGAGAAGCATTGCGAGGTTCAAATCAGTATGC 158
Query 135 AAAAGATGGAAATCGGTGATAGAATCGGGCTACTTCCGACGTCTCTTTGTCTCTCTTCAC 194
|||||||||||||| || |||||||||| |||||||||||||||||| | ||| |||||
Sbjct 159 AAAAGATGGAAATCAGTAATAGAATCGGACTACTTCCGACGTCTCTTCGGATCTTTTCAC 218
Query 195 GGAAACTCCTCTACCTCATGGTC-ACTCATGTTCAGAACAGAGTATCTTCGTCAGATGAC 253
||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct 219 CGAAGCTCCTCTACCTCATGGTCGA-TCATGTTCAGAACAGAGTATCTTCGTGAGATGAC 277
Query 254 ACAAGCCATAGGCTTCCATGGATGCAAAACATGGGATCTTCCCAAATCACTACTTTCTTA 313
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 278 ACAAGCCATAGGCTTCCATGGATGCAAAACATGGGATCTTCCCAAATCTCTAGTTTCATA 337
Query 314 TATCATGCCATTTCAAGTATATCCGAATCTCCCTACCGGCTCTGAATACTACTATATAGC 373
||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 338 TATCATGCCATTTCAAGAATATCCGAATCTCCCTA-C--CTCTGAATACTACTATATAGC 394
Query 374 TTCTTCCAATGGATTGATTTGGATCGATGT-CTTTGTTTCTCGCATCAAGGACATGGTTT 432
|||||||||||||||||||||||||||||| | ||||||||||||||||| ||| |||||
Sbjct 395 TTCTTCCAATGGATTGATTTGGATCGATGTGC-TTGTTTCTCGCATCAAGAACAAGGTTT 453
Query 433 CTAGTTATAAATCTTTTGTTGGTAATCCAGTTTTACAACAATGGGTTGAGATCCCTCAAC 492
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 454 ATAGTTATAAATCTTTCGTTGGTAATCCAGTTTTACAAGAATGGGTTGAGATCCCTCAAC 513
Query 493 CTCCTAATCCATGGGTTCAAGATAAACACCCTTGGTATCCGAGTCCGTTA-AGCGACGTT 551
||||||||||||||||||||||||||||||||||||| |||||||| || |||| ||||
Sbjct 514 CTCCTAATCCATGGGTTCAAGATAAACACCCTTGGTACCCGAGTCC-ATATAGCGGCGTT 572
Query 552 GGTATGGTAACACGCGTTGAGAACGGCGTCGTTTCAAGCTTCAAGATAGTTAGGACAATC 611
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct 573 GGAATGGTAACACGCGTTGAGAACGGCGTCGTTTCAAGTTTCAAGATGGTTAGGACAGTC 632
Query 612 CAAATGGAACTGATTGATCGTAGAGATGAAGGAATGTATTTATGGAGAGTTTGTGTATAT 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 CAAATGGAACTGATTGATCGTAGAGATGAAGGAATGTATTTATGGAGAGTTTGTGTATAT 692
Query 672 TCTTCGGAGACAGGTTTATGGACTTTCAAGCAAGTTTTCTCATCTCGACCCGTCAACGCT 731
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 693 TCTTCTGAGACAGGTTTATGGACTTTCAAGCAAGTTTTCTCATCTCGACCCGTCCACGGT 752
Query 732 GGTAGAATTGATTCTCCGGTGAATCTCAATGGGAGT-CTTTATATGTGGGATAGGTATAT 790
|||||| |||||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 753 GGTAGAGTTGATTCTCCGGTGAATCTCAACGGG-GTTCTTTATATGTGGGATAGGTATAT 811
Query 791 GTTTTCTAATGGACCTGGTGTCCTTGTAGCTCATGACTTTTATGGCCATGAAGCTGATGA 850
|||||| |||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 812 GTTTTCAAATGGACCTGGTGTCCTTGTAGCTCATGACTTTTATGG--A-G---CTGATGA 865
Query 851 TCAATGTCAGGTTATACCTCTCCCTGGCGCGGATGATGAAGATG 894
||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 866 TCAATGTCAGGTTATACCTCTCCCTGGCGCGAATGATGAACATG 909
Score = 793 bits (429), Expect = 0.0
Identities = 467/486 (96%), Gaps = 0/486 (0%)
Strand=Plus/Plus
Query 886 ATGAAGATGTTCGGAGATGCTTGACTACTTCAGGAGAAGATGTTATCTTCATTGAAGTAA 945
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 ATGAACATGTTCGGAGATGCTTGACTACTTCAGGAGAAGATGTTATCTTCATTGAAGTAA 990
Query 946 TACATCAAACATTGAAAGTATGGAGGCTGAATAACGAAGAGAGTGAAAGGTGGCAACTGA 1005
|||||| || |||||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 991 TACATCGAATATTGAAAGCATGGAGGCTGCATAACAAAGAGAGTGAAAGGTGGCAACTGA 1050
Query 1006 TTTGGGAAGTCATCATGCCGTCTTTCATATCTGATGTCAACTGTTTTCCCCTGGCAATGA 1065
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 TTTGGGAAGTCGTCATGCCGTCTTTCATATCTGATGTCAACTGTTTTCCCCTGGCAATGA 1110
Query 1066 ATCCGTTTGATACTGATATCGTCTATCTGTGGGATCGTCAACACGGTTGTTTGGTATCGG 1125
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 ATCCGTTTGATACTTATATCGTCTATCTGTGGGATCGTCAACACGGTTGTTTGGTATCGG 1170
Query 1126 GTTACTTGCAGGCACAAGAGTTTATTGTTCATCAAGAGTCAGAGGGTTGGAGTAGTAGTG 1185
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1171 GTTACTTGCAGGCACAAGAGTTTATTGTTCATCAAGAGTCAGAGAATGGGAGTAGTAGTG 1230
Query 1186 AAGGTGATTGTTGTCGCGTAAACACGTCGGGTACTGAGGGGTACATGGAAGAGAGATGCG 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 AAGGTGATTGTTGTCGCGTAAACACGTCGGGTACTGAGGGGTACATGGAAGAGAGATGCG 1290
Query 1246 ATGGAGTCCTTATGTTATCCCAGTTTGTGCTCCCATGTTGGATGGACTCGGTACCCCGAC 1305
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1291 ATGGAGTCCTTATGTTATCCCAGTTTGTGCTCCCATCTTGGATGGACTCGGTACCCCGAC 1350
Query 1306 CGCCAGATTAATTATCATTCTTAGGGAAGCTTGTTCTTTGGTGTTTATGTATTTTTGTTT 1365
||||| ||| |||||| ||||| ||||||||||||||| ||||||||||||||||| | |
Sbjct 1351 CGCCAAATTGATTATCCTTCTTCGGGAAGCTTGTTCTTCGGTGTTTATGTATTTTTATGT 1410
Query 1366 ATCCTT 1371
||||||
Sbjct 1411 ATCCTT 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5