BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474138
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50020.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1240 0.0
> AT1G50020.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth
stages; Has 72 Blast hits to 72 proteins in 27 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:18519946-18521695 REVERSE LENGTH=923
Length=923
Score = 1240 bits (671), Expect = 0.0
Identities = 813/876 (93%), Gaps = 31/876 (4%)
Strand=Plus/Plus
Query 1 TATAAAACACAGCTTCCTTCCTTCCTCCTATATATTCAGCGGCGACGCCTGGATCATGAT 60
||||||||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||
Sbjct 8 TATAAAACACAGCTTCCTT-CTT-CTCCTATATATTCATCGGCGACGCCTTGATCATGAT 65
Query 61 TCTTTCCGGCATCTGA-AAGAGAAACAAAAATGGCTTCTTCTTCTCTCGAGATTGTTAAA 119
||||||||| | |||| ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 66 TCTTTCCGGAAACTGATAAGAGGAACAAAAATGGCTTCTTCTTCTCTGGAGATTGTTAAA 125
Query 120 TTGTGTGGCTCTCCTGTTTC-TATTCCCCGCCATAAATCTCCCATTAAATTGGAATGTAG 178
||||||||||||||||| || | |||||||||||||||||||||| ||||||||||||||
Sbjct 126 TTGTGTGGCTCTCCTGTATCGT-TTCCCCGCCATAAATCTCCCATAAAATTGGAATGTAG 184
Query 179 AAAAAGGGTTCTAAGATTATCCGATTCTAGGACTTGGCATCGTCTTGGTACATGTGTTAG 238
|||||||||| | |||||| || ||||||||| |||||| || || | ||||
Sbjct 185 AAAAAGGGTTTTCAGATTACCCAATTCTAGGAGTTGGCA---TC---GT-C-----TTAG 232
Query 239 GGTTTATTCTTCTGCTCTCAA---CGGTGATAATCAGTCCAAAGGTGAAGAACCTCCAGA 295
||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 233 GGTTTCTTCATCTGCTCTCAATGGTGGTGATAATCAGTCCAAAGGTGAAGAACCTCCAGA 292
Query 296 ATCTTTATTTATGAAAGAATTGAAGAGACGTGGTATGACTCCTACTTCGTTGCTTCAAGA 355
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 293 ATCTTTATTTATGAAAGAATTGAAGAGACGTGGTATGACTCCTACTTCCTTGCTTCAAGA 352
Query 356 CTATGAAGTGGATCAGGATGAGATCAAAACCGATAAAGAAACCGGAAACAGTTCTAAAAC 415
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 353 CTATGAAGTGGATCAGGATGAGATCAAAACCGGTAAAGAAACCGGAAACAGCTCTAAAAC 412
Query 416 GACTGCAACTTCTCCGGCGTTTGATAAAAGCTTGTTAAATCAGAGAGAGAGATCTTTGGC 475
|||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 413 GACTGCAACTACTCCGGCCTTCGATAAAAGCTTGTTAAATCAGAGAGAGAGATCTTTGGC 472
Query 476 TTTAAACAGTGAAGGGCTTGAGGGGTTGATTCCGCGTGCTAGGATCTTGCTGACAATTGG 535
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TTTAAACAGCGAAGGGCTTGAGGGGTTGATTCCGCGTGCTAGGATCTTGCTGACAATTGG 532
Query 536 AGGGACTTTCTTCTTGGGCTTTTGGCCATTGATAGTCCTAACTCTCGGCGCCTTCTCTGC 595
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 533 AGGGACTTTCTTCTTGGGCTTTTGGCCATTGATAGTCTTAACTCTCGGCGCCTTCTCTGC 592
Query 596 TCTTTACCTTTACTTTGGAGCAGATTTCGTTCATGATGGAAGTAGAACTCCCGTTTCACC 655
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 593 TCTTTACCTTTACTTTGGAGCAGATTTCATTCATGATGGAAGTAGAACTCCGGTTTCACC 652
Query 656 ACCACCGTACATCGATCCATATGCTCTGTTGGAGGATGAGAGGATATCAGGGATGGATCC 715
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 ACCACCTTACATCGATCCATATGCTCTGTTGGAGGATGAGAGGATATCAGGGATGGATCC 712
Query 716 TCGTGTAAATTAGCAGGCAACAAGTTGTTCTCTATACTCTACATAACTACTAGTATAGAG 775
|||| |||||||||||||||||||||||||| | || | | |||||||| | ||| |||
Sbjct 713 TCGTCTAAATTAGCAGGCAACAAGTTGTTCT-T-TA-T-TGCATAACTAGT-GTA--GAG 765
Query 776 Catatatatttgctcttaagtatatatttttattttacagtctttcctttcatttatttt 835
||||||| || ||||| |||||||||||||||||| |||| ||||||||| |||||||||
Sbjct 766 CATATAT-TT-GCTCT-AAGTATATATTTTTATTT-ACAGCCTTTCCTTTTATTTATTTT 821
Query 836 ccttaCGGTTGTAAAAAGAATCGTTGCTTCTCTATT 871
||||||||||||||||||||||||||||||||||||
Sbjct 822 CCTTACGGTTGTAAAAAGAATCGTTGCTTCTCTATT 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42498088362
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5