BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474142

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50060.1 | Symbols:  | CAP (Cysteine-rich secretory proteins...   752    0.0  


> AT1G50060.1 | Symbols:  | CAP (Cysteine-rich secretory proteins, 
Antigen 5, and Pathogenesis-related 1 protein) superfamily 
protein | chr1:18551186-18552578 FORWARD LENGTH=618
Length=618

 Score =  752 bits (407),  Expect = 0.0
 Identities = 461/488 (94%), Gaps = 0/488 (0%)
 Strand=Plus/Plus

Query  1    ATGAATACTTTCAAAACCCCATCAGTCCTAATCGTTGCGATTAGCTTCCTGGTAATTGCA  60
            |||||||||||||||||||| |   || | ||||||||||||||||| || ||  |||||
Sbjct  1    ATGAATACTTTCAAAACCCCTTTTCTCGTCATCGTTGCGATTAGCTTTCTTGTTGTTGCA  60

Query  61   ACCAATGCTCAAAACACTCCACAAGACTACCTTAACTCTCACAACACCGCTCGTGCGCAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ACCAATGCTCAAAACACTCCACAAGACTACCTTAACTCTCACAACACCGCTCGTGCGCAG  120

Query  121  GTTGGAGTACCGAACGTCGTGTGGGACACAACGCTCGCGACCTACGCATTGAACTATGCG  180
            ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| | 
Sbjct  121  GTTGGAGTACCGAACGTGGTGTGGGACACAACTCTCGCGGCCTACGCATTGAACTATTCA  180

Query  181  AATTCTAGAAAGGCCAACTGCAGCCTTGTTCACTCCAACGGACCATATGGAGAAAACCTA  240
            |||| |||||| ||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct  181  AATTTTAGAAAAGCCGACTGCAACCTTGTTCACTCCAACGGACCATATGGAGAAAACCTA  240

Query  241  GCCAAGGGGAGTAGTTCCACGTTCTCGGGCATCTCGGCCGTCAAACTTTGGGTCGACGAG  300
            |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct  241  GCCAAGGGAAGTAGTTCCTCGTTCTCGGCCATCTCGGCCGTCAAACTTTGGGTCGACGAG  300

Query  301  AAACCTTACTACAGCTACGCATATAACAATTGCACAGGTGGAAAACAATGCTTGCATTAC  360
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  301  AAACCTTACTACAGCTACGCATACAATAATTGCACAGGTGGAAAACAATGCTTGCATTAC  360

Query  361  ACGCAAGTGGTGTGGAGAGACTCAGTGAAGATAGGGTGTGCTAGGGTTCAATGCACTAAT  420
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  361  ACGCAAGTGGTGTGGAGAGATTCAGTGAAGATAGGGTGTGCTAGGGTTCAATGCACCAAT  420

Query  421  ACTTGGTGGTTCGTGAGTTGTAACTATGACTCACCCGGTAATTGGGTCGGAGAGTACCCT  480
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  421  ACTTGGTGGTTCGTGAGTTGTAACTATAACTCACCCGGTAATTGGGTCGGAGAGTACCCT  480

Query  481  TACTGATC  488
            ||||||||
Sbjct  481  TACTGATC  488



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23258410061


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5